Array 1 8894-7895 **** Predicted by CRISPRDetect 2.4 *** >NZ_QHMM01000045.1 Klebsiella pneumoniae strain PEC-VIM NODE_45_length_14854_cov_25.3074_pilon_Genepoc-VIM, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8893 29 100.0 32 ............................. ATCAGCCTGCGGGGTTCGGAGCTGCGTGTCTC 8832 29 100.0 32 ............................. GAAACTATTTCGGAGCATCTCATTGCTGAGGG 8771 29 100.0 32 ............................. TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 8710 29 100.0 32 ............................. TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 8649 29 93.1 32 ............CA............... AGGTATTTGACCTCATCCAGAAAGGCACAGAC 8588 29 89.7 32 ............CA..............C CTTAGAGAAGCAAAAAAACCACCGAGGCAGGG 8527 29 100.0 32 ............................. TTACCAATGGGGAAAAATCTTCATTTGTAAAT 8466 29 93.1 25 ............CA............... AACATCAGTGGAAATCCACTGCGGC Deletion [8413] 8412 29 89.7 32 ......T.....CA............... AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG 8351 29 100.0 32 ............................. TTAATGTTTTGTTAATTTATGAGTGTGGTGAT 8290 29 93.1 32 ............AC............... AGCAAATCGAAAATCCGGCTGTTTGAAAAATG C [8285] 8228 29 86.2 32 ...........CC..A............C CATGAGCCTGCGCACTCTGACGCGCACCTGCT TC [8212] 8165 29 93.1 32 ............CA............... CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 8104 29 93.1 31 ............C..A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 8044 29 86.2 32 ...C........CA............T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 7983 29 93.1 32 ............CT............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 7922 28 79.3 0 ........T.A.CA.........-....A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 93.5 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : CATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGAAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAAC # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [22-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 192821-191022 **** Predicted by CRISPRDetect 2.4 *** >NZ_QHMM01000005.1 Klebsiella pneumoniae strain PEC-VIM NODE_5_length_419821_cov_18.8945_pilon_VIM, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 192820 29 100.0 32 ............................. CGATCGTCAATCTCTGGCAAGCGCTGAAAATT 192759 29 100.0 32 ............................. CCAAATGGGAGCATTTATCTTTTCGCCGGTCA 192698 29 100.0 32 ............................. AGACTAATTATATACACACTTAATCCTGAGTC 192637 29 100.0 32 ............................. CGCCGGTCAGTGGTCAGGCAGGAAAAAAGCAG 192576 29 100.0 32 ............................. TCATTTCTGACGCGAATGGCCGACATGCTGGG 192515 29 100.0 32 ............................. GAAATTAATCGCCCGTCTTCGCAGTCCTGCAA 192454 29 100.0 32 ............................. GCCAGTAGTTTTATTTCGAAATGCATTTCATT 192393 29 100.0 32 ............................. TAACCCACCGCAATTACGCGAATTAAACCCCA 192332 29 100.0 32 ............................. TAACGTCGCGGTGCGTCATCTCATCGGCAGTG 192271 29 100.0 32 ............................. TTGAGTTCGGGTCACGCCGCCGGGGTTGAGAG 192210 29 100.0 32 ............................. GCCTTTTCCGTTTTGCCGAAGAGTGTTGCGAA 192149 29 100.0 32 ............................. GATTATGCAAAACGACTTAGAGCCATAAGAAA 192088 29 100.0 32 ............................. TTTTCGGAATTACTGCGAGCGAGAGAGTGTCG 192027 29 100.0 32 ............................. GCTGCGTTGCCGTATTTACTCGCAGCGGCGGC 191966 29 100.0 32 ............................. TAACAGACGTATCATTTATGTTTGCTTACTCT 191905 29 100.0 32 ............................. GAAGTTAGCGATTATTTTTTACTGGAGAAACA 191844 29 100.0 32 ............................. TGACAACCAGATCCGAAAATCCTGGAGCCGGG 191783 29 100.0 32 ............................. ATTACATCGTTTTCCGGGTTTCGTTTGAGCAA 191722 29 100.0 32 ............................. GAGGGGCCATGGAGCCGGTGTTGATTGCGTCC 191661 29 100.0 32 ............................. CGATTGTCGGTGGTTGTCTGCTGGTATCTGCT 191600 29 100.0 33 ............................. CGCCGGTCAGTGGTCAGGCAGGAAAAAAGCAGC 191538 29 100.0 32 ............................. GCGTTGTCGTCTAACCCGTCTAACCTGCGCGG 191477 29 100.0 32 ............................. CAGGGTCGCCGTATCCTTCGCCAGATGGCGGA 191416 29 100.0 32 ............................. TTACAAATCGCCTCGGGTGGTGCTCTGAAATA 191355 29 100.0 32 ............................. GAAATTCTGATTTTTTTACCGTGGATTTCCAC 191294 29 100.0 32 ............................. GCTATGGGAGTTAATGACATGGAACAGAAATT 191233 29 100.0 32 ............................. GCTCTTCTTCCTCCGCGAGTTCTGCATACGTG 191172 29 100.0 32 ............................. GATTCTAATTGACGTTGTAATAATCGTGTGTG 191111 29 100.0 32 ............................. ACTGATATCACCGAACTGGCTCGGGCCATGAA 191050 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 30 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCGGAGGGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //