Array 1 975487-974056 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTDY01000012.1 Klebsiella pneumoniae strain K401 K401_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 975486 28 100.0 33 ............................ TAAAAAACCCGCATTATGCGGGTTCAGTTTACT 975425 28 100.0 33 ............................ CCACCCGAACACCGTGCAGCTCAACCTGAGCAC 975364 28 100.0 33 ............................ TTTGCAACAATATACCACTTCCCGACCTTTGAT 975303 28 100.0 33 ............................ TAGGTTTTTGTTGTCTGATTGAATGGGTTGTCA 975242 28 100.0 33 ............................ TGCTTCTATTAACCTGTTTCTGTAGCTTAAACC 975181 28 100.0 33 ............................ TGATGTGGGAGTGTGGTGTAAAAAACTCTCTTT 975120 28 100.0 33 ............................ TCTTATGCACGGTGTTGGATACGAACCACTCCA 975059 28 100.0 33 ............................ TACCCCATTTCTGTCTTTTGTAAGCTCCATCAC 974998 28 100.0 33 ............................ TATTAATGCTTACGTTTCGTGGTTTGAGGATGA 974937 28 100.0 33 ............................ CGTCGTGAATTACGGCAATACGCTGGACCGCAA 974876 28 100.0 33 ............................ CAGTACCGCCAGCAGCGCCTTGATGCCATGTGG 974815 28 100.0 33 ............................ TTAACTATGCAGCGTAACCGTGCTTTCGTCTCA 974754 28 100.0 33 ............................ CTGCAAAAGCAAAATGTTGCTCTGTCAGGTGCA 974693 28 100.0 33 ............................ TATCAATCTCTGAAATCATTTTGTCTATTTTGT 974632 28 100.0 33 ............................ CGCGACGACCTCGTCATCCTCCCCGCTGCGGCT 974571 28 100.0 33 ............................ TTCCTCTTCTTCCTGACAATCAGCGCAGCGCTG 974510 28 100.0 33 ............................ TGCGGGTGGATGACAATAACGCCTGGCGCGCCG 974449 28 100.0 33 ............................ CCTGTTAAGGATGACGCGGGGAAATGGGTTATC 974388 28 100.0 33 ............................ TCGATGGCGAGCTGCTGGTGAAAAAGTCGATAC 974327 28 100.0 33 ............................ TCCAGGCCAGATCTGTTTGGGTTGGTGTCGAAG 974266 28 100.0 33 ............................ TGAAGGTGAGCGCCAAAAGGAGTGGAAGCATGC 974205 28 100.0 33 ............................ CGGCTGCGTTATCCGGCAGCACGAACTGGACCT 974144 28 100.0 33 ............................ TGACCTTAGAGGCTTCACTCAGTGCCACTTTTT 974083 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 24 28 100.0 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTGCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCGCAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : TTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGGAGAGGTAGGAATATTTTATTGCGAAAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATAAATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCTTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGTTACAAATTGGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 984940-984240 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTDY01000012.1 Klebsiella pneumoniae strain K401 K401_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 984939 28 96.4 33 .............A.............. TCGGAGCCGCTTTACTGGTGAGTGCATAGGTTT 984878 28 96.4 33 .............A.............. CCGACGACGCCATGAGCGCCAAGCAGCGCCGTG 984817 28 96.4 33 .............A.............. TATGGGTTGCAGTGTAAGAGCGGCAAACGAAGC 984756 28 96.4 33 .............A.............. CGGCTCTTTTTTATCTCCTTCATCCTTCGCTAT 984695 28 100.0 33 ............................ TGATCGGCGTGCCGTTTGTTGGACCCGAAATAG 984634 28 100.0 33 ............................ CGTCATCAGCGCCTTGTTCCAGCGGCGACCACC 984573 28 100.0 33 ............................ TATCGTGCAGAGTCACAACCTGACGGGATTATC 984512 28 100.0 33 ............................ TCGTGCATGGTGAGGATTCTACAGTCGCACCAT 984451 28 100.0 33 ............................ TACCTCCCGGCGTCCGCGCCAGGGCGATCACGT 984390 28 100.0 33 ............................ CCTGCAGCTGGCCGTCGAGCTGACGGATGCCGG C [984385] 984328 28 92.9 33 ............T.T............. TTCATCACGTGTGAGCGGATTTGGCTCTATCCT 984267 28 89.3 0 ............T......A.......T | ========== ====== ====== ====== ============================ ================================= ================== 12 28 97.3 33 GTCTTCCCCACACGCGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTCGACGGCGCAGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTTATATGGTGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : CGCCTTTCAAGTGACGACAAGTCACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGACATTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATGT # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACACGCGTGGGGGTGTTTC # Alternate repeat : GTCTTCCCCACACACGTGGGGGTGTTTC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //