Array 1 882516-883555 **** Predicted by CRISPRDetect 2.4 ***
>NZ_CAJSIA010000001.1 Escherichia coli isolate Fecal samples, whole genome shotgun sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================ ================================= ==================
882516 28 100.0 32 ............................ ATGCAGCGTTTGTCACTAAAACACTGGTCAAC
882576 28 100.0 32 ............................ TGGTATACCTGGAAGTTCGTCCTGTTAAACAG
882636 28 100.0 32 ............................ GCCTCAAAATCCCTTGCGTGTTTTTGCTCCCC
882696 28 100.0 32 ............................ ATAAAGATAATAACACAATCGTGTCTGGATTT
882756 28 100.0 32 ............................ AGGAACCGCGTCAGCCCCCTGCAAAGCTCATT
882816 28 100.0 33 ............................ TGGCGCGCCTGGAGGACATCCCGGAAGACCAGC
882877 28 100.0 32 ............................ GGTAACGGGTCAGGCCGACCGTGGAATACCGC
882937 28 100.0 32 ............................ ATAAAGCGATCGACGCGGTTCCAGCCATAGAA
882997 28 100.0 33 ............................ TGATGCATCACAAACGGGAAGGGTAACGGGCGA
883058 28 100.0 32 ............................ AGACATCTGCTCAATAGAACGGGTGATCTCAA
883118 28 100.0 32 ............................ AGATCCAGTTCATCATCCAGCGCAGACTCTTG
883178 28 100.0 32 ............................ CGTCACCCGCGCAGCAGTCACACGGGCGCACG
883238 28 100.0 32 ............................ ACCGCCGGGGCGGTTTCCCCGATGAAAAGGAA
883298 28 100.0 32 ............................ GTGGCGCTAGCAATGAGATTTGCGGAAAAAAG
883358 28 100.0 32 ............................ GTGCTGCCCGCCAGCGTGGCGTAATTGTCACA
883418 28 100.0 32 ............................ AAAAAGTTGCGCCGCGTGACCGGCACTATAGA
883478 28 100.0 20 ............................ CTGAACGTTGAAGAGTGCGA Deletion [883526]
883526 28 78.6 0 CC..................A...C.CT | T,C [883544,883548]
========== ====== ====== ====== ============================ ================================= ==================
18 28 98.8 31 GTTCACTGCCGTACAGGCAGCTTAGAAA
# Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCTGGTAGGTTGGTTAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA
# Right flank : TACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAG
# Questionable array : NO Score: 6.26
# Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37
# Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41
# AT richness analysis in flanks prediction: F [60.0-50.0]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.51,0 Confidence: HIGH]
# Array family : I-F [Matched known repeat from this family],
//
Array 2 892615-893424 **** Predicted by CRISPRDetect 2.4 ***
>NZ_CAJSIA010000001.1 Escherichia coli isolate Fecal samples, whole genome shotgun sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================ ================================= ==================
892615 28 100.0 32 ............................ TGCAAACGCTACTTGCTCATTGACCACGTAAG
892675 28 100.0 33 ............................ GGTTAGGGGTATCGGCGCGCTTGACCTCCTGAG
892736 28 100.0 32 ............................ TTTTGGGGATACCTGTGTAAACCTTGAATTCT
892796 28 100.0 32 ............................ TTGTTGCGTGTTGTCGCATCCAGGATGCGACA
892856 28 100.0 32 ............................ TGTCAGGGCAGGCCCCGACACCCAGAACGTGC
892916 28 100.0 32 ............................ TTCAGCAGCTCTCGAACACGTTCCCAACCTTT
892976 28 100.0 32 ............................ ATGCGGTTGGTAGGTGGTCGTAGACCGTCAGT
893036 28 100.0 32 ............................ GTTCCGTATACCAGTGATATGCAGAAGGAACA
893096 28 100.0 33 ............................ AGGAGCATTGGCGGAGGGAACGCGAGCGCGGGT
893157 28 100.0 32 ............................ GAATCTCGGCGCGACGGCACCCGCCACCGGGG
893217 28 96.4 32 .G.......................... AGTTCGCGGCAGACATACACGCCGGGAGTTTT
893277 28 100.0 32 ............................ CAGCGGGGTGATTGAATATTTTGGCATCAGAC
893337 28 100.0 32 ............................ TTTCTGCTGTTATCGCCGGGTTGCACGAGTGC
893397 27 92.9 0 .......................-C... | T [893417]
========== ====== ====== ====== ============================ ================================= ==================
14 28 99.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA
# Left flank : TTTTTATGCGCGCCATGCCCACCGCATACAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTATATAGATTGATTCGTTTGGTTACGCAATGAACACACTGTTGGTGGGACGGAGATTATGACTGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAATCGTCCCTTTTTTTAGGGCGAAATGTAACTCATTGATTTTGTTTACTGCTATTTTGAAGTCTGGAAAAAGGGGGTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA
# Right flank : ACTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCATAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGA
# Questionable array : NO Score: 6.22
# Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37
# Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41
# AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.92,0 Confidence: HIGH]
# Array family : I-F [Matched known repeat from this family],
//