Array 1 1-628 **** Predicted by CRISPRDetect 2.4 *** >NZ_QLSX01000013.1 Halomonas taeanensis strain USBA-857 Ga0111603_113, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1 28 96.4 32 ...........T................ ATGTATAGGTAAAGTCAGTAGTTCCAATAGTT 61 28 100.0 32 ............................ AATGGGCCAAGCGCGAGCTGCGCCTGCGCCGC 121 28 100.0 32 ............................ TGCACCGCCCCTGGGGCAGACGTGCGCCAGAC 181 28 100.0 32 ............................ GTCGCGCAGAAATGATGCTCCGCATCCGTGAC 241 28 100.0 32 ............................ TTTATGCGTGGCTGGGGCGAGGAAGACGAGGG 301 28 100.0 32 ............................ TTTGCCAAACGTCGAGACGGCCCAGTGAAAGC 361 28 100.0 32 ............................ GGCTGGTGGCGCGTCGTCTCGAGCAGCGCGAA 421 28 100.0 32 ............................ GGCAGCGGCCGCACTGATTCGCGCCATCAGAT 481 28 100.0 32 ............................ GCCTACCAGCCGGTTGTCATCGACCTCGTAAT 541 28 100.0 32 ............................ TTGCCGACCTCGAGGATGAGGCGATGCAGCCG 601 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 11 28 99.7 32 GTTCGCTGCCGCCCAGGCAGCTCAGAAA # Left flank : | # Right flank : ATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCCCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCCCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1522-1729 **** Predicted by CRISPRDetect 2.4 *** >NZ_QLSX01000013.1 Halomonas taeanensis strain USBA-857 Ga0111603_113, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1522 28 100.0 32 ............................ CGGACAACTCGGGCGGCACGCTCCCCGGTGGC 1582 28 100.0 32 ............................ AGGCAAAAGAAAGCCCGCACTGGGCGGGCAAG 1642 28 100.0 32 ............................ ATCTCGAGCAGCTCCACCGGGTTGATGCCGGT 1702 28 89.3 0 ......................T..GT. | ========== ====== ====== ====== ============================ ================================ ================== 4 28 97.3 32 GTTCGCTGCCGCCCAGGCAGCTCAGAAA # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : ATCCATGCAAAGGCCGGCCCGGGAGACAGCTCCCGGGCCGGCCTTATGCGTGCGAGCGCGAGATTGGGTGCGGGTTCAGTCCACGATGGCGTTCAGGCGGTCGGGGAAGTTGGTGAACATGCCGTCGACGCCCCAGTCGATCAGCCGCTGCATGTCTGCCGGTTCGTTGATGGTATAGGGATGCACCAGCAGGCCGTTGGCGTGGGCTTGGTCGACGAAGCTGGCATCGATAACGTCCTGGCCTTCGTAGGTGACGTTGGGGCCGATGCCGACGGCGTAGTCGGCGATGGCCTGAAAGTCGGCGTCGGTGATCTCAGCGGGGGCCGGGGTCACGCCGGTCCATTCGACGAGGCCGTCGCTGTCTTCAGTGGTGGAATACCACACCAGCTGCACCAGCGGGATGTCAGGGTTGAGCGCATGGATCTGCTGCAGGCTGTCCTGGCTGAACGATTGGATGATCACGGAGCCGGCGTCCACGAGGCCTTCTGCTTCAAGCGTCT # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCCCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCCCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 79502-81269 **** Predicted by CRISPRDetect 2.4 *** >NZ_QLSX01000014.1 Halomonas taeanensis strain USBA-857 Ga0111603_114, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 79502 28 100.0 32 ............................ ATCGCGGGTGGGTGGCGGTGTAGGGGCGTTGC 79562 28 100.0 32 ............................ TTCTTGCGATAGTGGGCAGCCACCGGCGGCGG 79622 28 100.0 32 ............................ TGACACTGCTCGTCGCTGTGCGTCTGGCCGAT 79682 28 100.0 32 ............................ AGCCGGGCCGGATCCCCCAGGCGCTCGGGATG 79742 28 100.0 32 ............................ ACCCGCTCGCAAGGCGGCGTTGGCCTCGTTCG 79802 28 100.0 32 ............................ ACCTGGTGCCTTGCCCGCCATCGCGACGGGCC 79862 28 100.0 32 ............................ CAGGTCAACCAGTACGCCAAGGGCCTGATTGC 79922 28 100.0 32 ............................ TAATCCGCGCAATATGAACCGCAATATCTGTT 79982 28 100.0 32 ............................ CACGGAAGGAAATCGTTCGAGCAGTACAGGAA 80042 28 100.0 32 ............................ TGGGCAACGGCCGCAACTCGCCGCACGTCAGC 80102 28 100.0 32 ............................ ATTGCCCATCGCAGACACGTAGCGATAGACGT 80162 28 100.0 32 ............................ AGAGGACGGCGGTATCGACGCCACCATGCTTG 80222 28 100.0 32 ............................ TTGTCGCGCAGGGTGTCGATCTGCTCGCGAAA 80282 28 100.0 32 ............................ ATCATGATTGGCGGTATGCCAAGAGCCAGCGA 80342 28 100.0 32 ............................ ATCATGGAAGCTGCAATCACCGCTGCTCAAAC 80402 28 100.0 32 ............................ GACACGCAGCGGAAAGTCGTAGGGAATATCCT 80462 28 100.0 32 ............................ TAATGCCCTCTATCGACTACCGCCACGCCCTC 80522 28 100.0 32 ............................ GCGACAGTGGCTCGCCTTTGATGTGGCGAACC 80582 28 100.0 32 ............................ ATCACCGGGAGACCACTTGGCGGCATTTCCCT 80642 28 100.0 32 ............................ TGATCATCATGCCGGCCAACGCCATGATGATG 80702 28 100.0 32 ............................ ACGCCAAGGCCGAAAGCCTCAAGCGGCAGGTG 80762 28 100.0 32 ............................ CGGTCCCGCGCTCGCGGGCCGAATACGACAGC 80822 28 100.0 32 ............................ GTCGAGGGTGTCGAAGAAGTCATCCTCGACGA 80882 28 100.0 32 ............................ ATGAGCGCGAGCTATGACGACGTGCTGGCGCG 80942 28 100.0 32 ............................ TGTGTGCGCCGCTGCTGCTTAGTGATCGGGGT 81002 28 100.0 32 ............................ ACCTCCGGCTTCGACATCGCCGGGCCCTGCTA 81062 28 100.0 32 ............................ ATCAAGGTGGCGTCGCAGAAGGCGCGAGCGGC 81122 28 100.0 32 ............................ TGTGCTTCAGCCCATGCAGCAAGCTCTTCGAT 81182 28 100.0 32 ............................ TCCATGTCGAGGATCCGCTCGACAAACGCCCG 81242 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 30 28 100.0 32 GTTCGCTGCCGCCCAGGCAGCTCAGAAA # Left flank : AACGGCTGGAACAACTGATGGCTGTGCCCTGGCTGACGGGTATGCGGGACCATGTGCAACTCGAAGTCGTCCAGTCGGTGCCAGAAAAGGTGAGTTACCGGGTGGTTCGGCGCAAGCAGTTCAATACCGGAAGCCCCAGCCGGGCAAAGCGGTATGCCAAGCGTCACGACATCGGCATCGACGAAGCCCAGCGTTTGATGGAAAAGCCTGCTGAACGTCAAATCGCCTTGCCATTCGTGCAAGTCAGTAGCCGTTCAAGCGGGCAGCGGTTCGCCTTGTTTATTGAGCATGGCAAAGCGCAGCCACAACCCAGCTCCGGGCGCTTTAACCATTATGGCTTGAGCACGGAAGCAACCGTGCCCTGGTTCTGACCCTTTTTCCGAGCATTTTTATAGAGCTAGGAAAAACAATAAGTTAGCGACGCTTCCGAAAAAAGGGAGGCGTCGCGCTTTACGGCTATTGCTCTTTAATAATCAGAGGTTTAGCTTGAAAAAGCTCTA # Right flank : AGGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCCCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCCCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //