Array 1 239896-240350 **** Predicted by CRISPRDetect 2.4 *** >NZ_UKWF01000001.1 Klebsiella pneumoniae strain EuSCAPE_IT369, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 239896 28 100.0 33 ............................ CGATATTTACCGGGATTTCAGCCAGCACGCTCG 239957 28 100.0 33 ............................ CGAGCTCATCGCCTCCCTGGAGACGGCGGGCGA 240018 28 96.4 33 .......................T.... TATAGTATGACGATTGATTCCACTCATCAATTT 240079 28 100.0 33 ............................ CAAGACACCTGCAAACGGTATATCTTTGGAGTG 240140 28 100.0 33 ............................ CTGTTTCATTCGCTCCGATGGCTCGATCTCCGC 240201 28 100.0 33 ............................ TTTTCGAACGTCATCGACGGCTTTTAGCATTTA 240262 28 96.4 33 ..................A......... CATTGGCTGTGGCGCCTGGACAATCGGCAAAGG 240323 28 85.7 0 .C....T.............A......T | ========== ====== ====== ====== ============================ ================================= ================== 8 28 97.3 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : GTTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTTGACGGCGCCGCGCAGGATAATAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCAGTAACTTTGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTGATATGGGGACATACTTTTTCGTTTGATAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTATCGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : TCGCCTTTCAAGTGACGACAAGTCACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGATATTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 249103-250231 **** Predicted by CRISPRDetect 2.4 *** >NZ_UKWF01000001.1 Klebsiella pneumoniae strain EuSCAPE_IT369, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================== ================== 249103 28 100.0 33 ............................ TCCTATTTACACAGTACCTGGCGCGCCAGGCGA 249164 28 100.0 33 ............................ TGTCGATAAAGTCGAGCTCGACGTCGACGCGCT 249225 28 100.0 33 ............................ CAAAACCGAAGCGCTGTCACGCCTGAAAGAGCT 249286 28 100.0 33 ............................ CCAGAACCATGCCCCCGTGGTGGACATTGGTGG 249347 28 100.0 33 ............................ CCATGCGCACCTCTGCTGGCCATACTGTTTCCT 249408 28 100.0 33 ............................ TAGCTTTTAAGGGGAATAAAAAGCCCCCGGGCG 249469 28 100.0 33 ............................ TCGGGGCTTTGCTATTCTGCTATTTTGCTATTC 249530 28 100.0 33 ............................ CGCAACCACTGCCACCGATCGCATCGTAGCCGG 249591 28 100.0 33 ............................ CCAGTGGATCAATAACGTCGCTGTAAAATTTGG 249652 28 100.0 33 ............................ TTGAGACGACCGGCGAAACCCCGTCATTCGTGT 249713 28 100.0 33 ............................ TCGATGGGTCCAAAGTCACCGGACCGAGCTGGC 249774 28 100.0 33 ............................ CTCACCAGCTCTGCGGCCTTCTTGCGATACCGC 249835 28 100.0 33 ............................ TAAATGAGGCTAACTGGACGCAGCGAGAGAACG 249896 28 100.0 33 ............................ CTCTTTTGTCTCTATCCCTGTCTACTGGGTTTT 249957 28 100.0 33 ............................ CGACTGGATCACGTACCTGATCAGCGTAGTGGT 250018 28 100.0 33 ............................ CACTGGGGTAACTGGGCATTCAGCCCGGCCGAG 250079 28 100.0 33 ............................ CGAGTTCGCACGCCACGATCTCGCAGGAGAGCA 250140 28 92.9 36 ...........A..T............. CTACCGGCGCTGACTGCGCATGGCGATAGTAGATCT 250204 28 67.9 0 ..........T...T.C....T.TAGCA | ========== ====== ====== ====== ============================ ==================================== ================== 19 28 97.9 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTCCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCACAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : ACTAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGTAGAGGTAGGAATATTTTATTGCGATAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATACATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCCTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGCTACAAATTGGCTGGCTTGTTGGTGTGGATATCTCCAGGTGTTGGAGCAGTGACAGAAATCCATTTTACATCGA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //