Array 1 263799-264212 **** Predicted by CRISPRDetect 2.4 *** >NZ_DF968181.1 Flexilinea flocculi strain TC1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ======================================= ================== 263799 38 94.7 37 .....G.................T.............. TTCCTACTAAGAGATGTCCCAAGCAAAGCATAATCAT 263874 38 97.4 38 ..........C........................... TTACAGTATTGTGAATCTACACGTTGGGACGATGCTGG 263950 38 100.0 39 ...................................... TGTTCCCATCGGCAGCGCATAATCTATCCCAGTATGTCC 264027 38 97.4 34 T..................................... ACCTGAGCGAAAAGCGTTACACGAAGCTGCACCG 264099 38 100.0 37 ...................................... ATGCCCGACCGGCTCAACGCTTGCTGCGTGGTGATCA 264174 38 89.5 0 ....................T............GTC.. | T [264207] ========== ====== ====== ====== ====================================== ======================================= ================== 6 38 96.5 37 AGTATTAAAAACAAAATGCCCACCTCGGGCATTAAGAC # Left flank : ATTACAAACATCTAACGCTATCGCACGATTACCAAATGATTTATCTATTAAGGAGAAATCATCAAGAAATGATTGTCAAAATGCGTTTAGATCTGACGCTCATTCAAATTCATCCAAAACAAATCACTCTCGATAAAGTTGCATGTGGAATATAAACGGTTTTTTATATGATCGCCTTTGAATTTAATCAATCACGAAGACCCATTAAAACACGATTATTCGTCTATCTTATTCGATTGCCATGAATATTGTACTTCTTATTACTAATAAGCATCGTTCCCTATTAATACTCCACGACTTACTGAAAGCCAAATACCGCCATCCTTTTCAGACCGTTTTCAATTCCATAGCTCATGCAAGTTGTTCAAGAATAAGTTGTAATTCAGCCCACCTAAAGCCAGGTTGATCTCCCCCTTAATTGCTCTTTGATCGGTCAAATTATCGCAAAATACAATTATGACGTCTATCTCTCAAATAAGCTTATAGTTTTCAAACGCCTT # Right flank : CTGATAGGGTTAGACTTTACCAGGTATAGTCGCCTTATGTTTATCAGGTATGATCGCCCGGATGTTTACCACTTGAAAGATAGAAATCGGGAAGATGCCATTTTACGGGAATGGTGGCAATGTAGGGGCGACCGGCCGGTCGCCCCTACGATAACATCGATGGACAATTCGAAAGGCGCCCTTCTCCCTGTCAGGGGGAAGGAAACGCGGCTACCTTGCGGAAATGGAATCCCATAATTGCCAGCGTGATTGCCAGCGGGAAAAGCCTGGGACGGTGGAACAATGTCCAGAAGAACAGCTTCCAATAATGGAAGCGTTCTGTTCCGCGGATGCCGAGCCGATAGATCGATCGGCCGAGCGCCAGGATATACTGCGCTTCGAAATGGATTTTGATTTCCGGCGACCGATATTCCTTAAGAAATGTGATCGTGCGTTCATAATACTGTTTGGGTTCATACAAATAAGTCACAACACTACGGTAACCTTCCCGCAGCAATTCA # Questionable array : NO Score: 2.77 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTATTAAAAACAAAATGCCCACCTCGGGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.53%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-10.10,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 4548-5095 **** Predicted by CRISPRDetect 2.4 *** >NZ_DF968179.1 Flexilinea flocculi strain TC1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================= ======================================= ================== 4548 44 91.1 39 .A.-.........T..T............................ CGATCAACGATTTCACGGATAATGTCAATCAACGTTTTA 4631 45 97.8 39 ..................................G.......... CAGTCAACGATTTCACAGATAATGTCAATCAGCGTTTTT 4715 45 100.0 39 ............................................. CAGTCAATGATTTCACAGATAATGTCGACCAGCGTTTTT 4799 45 100.0 39 ............................................. CGATCAACGATTTCACAGATAATGTCAATCAGCGTTTTA 4883 45 95.6 35 ....................C...............A........ TAGTAGACAAATTCGCAGACGATGTCAACCAACGT 4918 45 100.0 35 ............................................. TTTACTGTAGTAGACAAATTCGCAGATGATGTCAA 4960 45 93.3 39 ......................T........T..G.......... TTTACTGCGATCAACGATTTCACAGATAATGTCAATCAG 5051 45 91.1 0 ......................T..................GT.T | ========== ====== ====== ====== ============================================= ======================================= ================== 8 45 96.1 38 CTGTAGTAGACAAATTCGCAGACGATGTCAACCAACGTTTTACTG # Left flank : CAAGAGATACTCACATCCATATCCAAAACGTTAGGGTTGAATTGTAATATCTTCTCAGATTCTAATTATCAGAATGATAGATTCGGGGAATGGTGGCATATTTCTGCAAGCAGTTCCACTTACAACGAGGACTGGTTGAGAGATATTGTAGACAGTGATTTTGTAATTGCCGATTCATTCCATGGGATATGTTTTGCAATCATCTATAGAAAACCCTTTATCGCAATAGCAAACAAAAGAAGGGGAATAACTAGATTCACATCCCTGCTGAATTTGCTCGGATTAGGAGACAGGCTCATTTTCAATGCACAACAACTTGAGAACAAGTTCGAGTACCTTATGAAGATCGATTATGACAAAGTTTATTTGATTTTAAACAAGGAAAAAGCACGAAGCATAAACTGGCTTAAAAGTACCCTTACTCCAATGATTCCCAAAAAACCGATGTCAACGTACGATTTTTTCAGTGAAAAACTACTTACGGTCGACCAGCGTTTTGC # Right flank : TTGATAGAGAAATGGGTTAACAACCAAAATAATCAAATAAACTCGTTAAATAATGATATAACCCGTTTACAAGACACATTGTGCCAGAAGGAACAGGAATTGGCGAGAATGTATAAATCGAAAACATTTAAAATTGGTCGGATAATTGCCTATATTCCTCGAAAGATATATTTTTTACTTTCAAGAAAATAGTCCAAGGTTAAATGCCTCAAAATATCCTCTGAGCGAATTTTTCATTACTTATAGATTGTTACTCAACCGGGTCTATGCTAAAATATCGGACAGAAAGTTAAGCAGAAAAGTACCGAAAAATTTGAATCAAATGGGGTTGAGGAATTGACCCTTGCAAAAAACACGAATGGCTTGATGAACGATTATGAAGCTGTTCAGAATGCAGTGATTTATCCTTACTCAAACGGATTTGTTGAGGGTTGTAATAACCGGTTGAAAATGATAAAACGGACGATGTATGGAAGAGCCCGGATATCACTATTACGTGC # Questionable array : NO Score: 2.75 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTAGTAGACAAATTCGCAGACGATGTCAACCAACGTTTTACTG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.60,-4.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [5-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 452877-458618 **** Predicted by CRISPRDetect 2.4 *** >NZ_DF968179.1 Flexilinea flocculi strain TC1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 452877 33 100.0 34 ................................. CGTCAATCAAGGCTCTGAATTTGACGCCAGACGG 452944 33 100.0 34 ................................. ATCGATGCACTACGAATCCTACGCGAAAATCATT 453011 33 100.0 35 ................................. AGCAGCGTTCGACGCATCAACTGGTCATGATCATG 453079 33 100.0 33 ................................. GGGCATCCTCTCGAAGTAATTACATAACCTTTT 453145 33 100.0 34 ................................. ACTGGAGATGACAAAAGAATTAGTTTATCGCAGG 453212 33 100.0 35 ................................. GTTCCCATCCAGAGCGTTTAGCAAAGTGTCATCAT 453280 33 100.0 36 ................................. ACTGGAGATGACAAAAGAATTAGTTTATCGCAGGAT 453349 33 100.0 34 ................................. CCTTCTGCATCTTGGATAGTTTGCGCTGCTCCCG 453416 33 100.0 33 ................................. GCTCAAAATCCCGATGTCGGGAAATATGTCAAG 453482 33 100.0 34 ................................. ACGTAATAACTGGCTCGTGTCGGTTTCGTGACGT 453549 33 100.0 34 ................................. TATGGAGAAAAACAGAAAAAACCAACTTAATTTA 453616 33 100.0 35 ................................. GCTGTCATTGATTATTTGTACCTGATCGGAGACAT 453684 33 100.0 33 ................................. GCGGTTTACGTCTGGATGCCATTGCTTGACCAT 453750 33 100.0 35 ................................. TGCTTTTGTGGCAAACAGCTGACTTTCATCATAGC 453818 33 100.0 36 ................................. CCATGTTTCTTTTTTCCTCGGTGACATCCTGACAAA 453887 33 100.0 36 ................................. TTCGGGACAAGCTGCACGATTAAACGCAAGGGACGC 453956 33 100.0 33 ................................. AACTGATCCGCGTTCATCCTGCTGACTGGCGTA 454022 33 100.0 34 ................................. TGGCTCGATCAAAAAGCGTGTCAGCCCGCCTAAA 454089 33 100.0 36 ................................. ACGCTGGATGATGCGAAAAATGCCGGTTTGATCAGA 454158 33 100.0 34 ................................. AGAATTAGGAATTTTTGTTACACAATGTGCCGGA 454225 33 100.0 34 ................................. ATCCCCGGAAGTTTTGAACGGCATCAAAAAGATT 454292 33 100.0 36 ................................. TAGGGTCTGAATCTATAACTAACTGATCTAATTATA 454361 33 100.0 34 ................................. TTTTATCCTTGCAATTAAATGCAGTTGTAGTCCG 454428 33 100.0 34 ................................. ATTGCATGAAGATGAAATATTTTTGAATAATGAC 454495 33 100.0 34 ................................. AAGAGTTAGGTATTTTCGTCACACAGTGCGCCGG 454562 33 100.0 32 ................................. TCCGCGATTGGGCGATTATGGATCTGGAAGAG 454627 33 100.0 34 ................................. ACCGCTTTTCTGATTGCAAATTTGCGTTTATCTT 454694 33 100.0 35 ................................. GACATGTGGTATGAGGGCAATTCGTTTGAAACAGA 454762 33 100.0 33 ................................. CGTGATGATTTGCTGAAAAAATCAGACTGGACG 454828 33 100.0 34 ................................. TTATACAGGTCAACGATCAGTTTTACATCGTTGA 454895 33 100.0 34 ................................. ATCGCACTTCTCAACAATCTCAGATAGCTCTGTT 454962 33 100.0 34 ................................. CTCGAAGGAATCATAGCCTACCGCGTTGTATTGA 455029 33 100.0 36 ................................. TGGGAAAAATACAATCAAGCACACGGCGTGTCATGC 455098 33 100.0 34 ................................. GACATCGCAAGATGTGCTACAAAATGCTACGGAT 455165 33 100.0 34 ................................. TGTCATGGTTATTTCTCCTCATTCAATCCATAAC 455232 33 100.0 35 ................................. GCTCTGTGGCATGAACAAATTGCCCATGGAATCAT 455300 33 100.0 34 ................................. ATCGAGATCACGACCGAGGGCATGGTGGCTGACG 455367 33 100.0 35 ................................. TGTATCAAATAACAAAGCTCTAGCTACAACGTCTA 455435 33 100.0 34 ................................. ACGTCTTCTTGCTCCAAATTAATTGTTGCCTGAG 455502 33 100.0 34 ................................. AATAACAAAAGTAATTTTTCAATACTGAGAGAAA 455569 33 100.0 34 ................................. GTGACAAAAGCAGAAGCACAAGCGGAGTGCGATC 455636 33 100.0 34 ................................. TTTGTCCCAATCACCGACAGTTTCGAACCAGGCG 455703 33 100.0 35 ................................. AAAAATAAATGGCGGCAATGCCTGGAACTTTACCC 455771 33 100.0 35 ................................. AACGCAGTGAATGTGGTCTAAAAAAAAGGGACGTA 455839 33 100.0 35 ................................. TTCTGCTGTCATCACCAAGGTAACCGCTGAGCTCA 455907 33 100.0 33 ................................. TTGTCGTGTGATTGTGTTGTTCTGATTGATGTG 455973 33 100.0 34 ................................. CTCTCTCACAGCGGACAACGGTCGAAGCAGTTGG 456040 33 100.0 35 ................................. GCTGGTGTTACTGTGCCTTTGTCACCGATGGAAAT 456108 33 100.0 35 ................................. TATAAAATATAGATTTTATAGAATACATTCTTCGA 456176 33 100.0 34 ................................. ATGAATTTCAAATTACCTTCGGAAATAATCGGAA 456243 33 100.0 35 ................................. CGTCGTGCTCGTAGGTCTGCGGCATGTCAAATCGG 456311 33 100.0 34 ................................. GAGGAAATTATCGGGGATGAAGTCGCGGAAAACG 456378 33 100.0 34 ................................. GAAGAGTTTCTGATCAGTCTTGCCAAAGGCGATA 456445 33 100.0 34 ................................. TTACAATCCCTCCGTGTTATATCGAAAAAACGAC 456512 33 100.0 34 ................................. ATAACCGTTGAATATTATGAACCGGACGCTGATT 456579 33 100.0 36 ................................. CCCCAACCTGACATAAACTTATCTGACATTGTGACA 456648 33 100.0 33 ................................. GAGTGTAGGCGGACTCATTACTCTGTAATTTGT 456714 33 100.0 34 ................................. CTGTTTGTGTGGTGATACGAACCGGTATAAGTGC 456781 33 100.0 34 ................................. CTGAGAATGACATTAATCAATCAATCAAGAACTA 456848 33 100.0 34 ................................. TTCAGCAAATAATAAATTTTTGGATCCTAAGCAA 456915 33 100.0 33 ................................. CGTCAGGTTCCTGATTGCCTGGTAAAGACAGCC 456981 33 100.0 35 ................................. ATATTACCATGCAAAAAAATTTAGCATAGCACAAC 457049 33 100.0 34 ................................. CTTCTTCCGTTTCCCCAAAAAAGTGCATACGATA 457116 33 100.0 34 ................................. CGGAAGCTGAGGAAAATGGATTAATGCCTGTGGG 457183 33 100.0 34 ................................. TCTTTAGTTGCTTCACGTACTCTGGGTCGAGGAA 457250 33 100.0 33 ................................. TTTGTAGTGCAATCTATAGGGTAAAAAAATATC 457316 33 100.0 35 ................................. ACTTTCTGTTTTTTTCTAAAATTTCGAAATATACA 457384 33 100.0 33 ................................. TGTCCATTATTCCCTCCGTTTCTCTCTCTTGAG 457450 33 100.0 33 ................................. AGATAAGGAATTATTCTGAGCGGAAACACTTCG 457516 33 100.0 35 ................................. GTATACTAATCTATACATTAATTAATTAATCAATC 457584 33 93.9 33 ..........G.......G.............. GCAACATGAGGATTAGTTGGCTGTATCGGTCGG 457650 33 93.9 33 ..........G.......G.............. AGCAAAATGGATTAATGCCAGTTGAAAAAGTAG 457716 33 93.9 34 ..........G.......G.............. AAGAGACTCAGGCACTCATTTATTGCCGCTGATA 457783 33 93.9 34 ..........G.......G.............. CAAAAAAATCTTCATCAGAGGATTCTTCTGACGA 457850 33 93.9 33 ..........G.......G.............. GTATACTAGCCTATACATTAATTAATCAATCAA 457916 33 93.9 34 ..........G.......G.............. ATTTTAATTGATTAATAAATTCCAGGACTCCTGA 457983 33 93.9 33 ..........G.......G.............. GTATCACCATGCAAACAGGAGCACTTATACCGG 458049 33 93.9 35 ..........G.......G.............. TGAAAGCAGCGCAGGAAGGCCTCCGATGAAATACA 458117 33 100.0 33 ................................. ATCGGTCAGCCGTTTCGCCATGATGTGCGCTCA 458183 33 100.0 34 ................................. TGATTGAATCGGCTCTGTTGTGAGGGTGTTTATG 458250 33 100.0 34 ................................. GGTTAATCCAATACCGTTTGTATCATGACGCGTT 458317 33 97.0 34 ..........G...................... TTTGTGTATCTAATATAGCATTTACCCACATTTT 458384 33 90.9 34 ..........G.........TT........... GAAATCCGCTGGAGTACCGTCCTCGAGGATGATA 458451 33 93.9 35 ..........G.........T............ ATAATGTAATCAGTCAATTCATAGTTACTATTCAA 458519 33 97.0 34 ..........G...................... ATCAATGTATTAGTCTGATTAACCCTTGCAACTT 458586 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 86 33 99.2 34 GTCGCTCCCCACGTGGGGAGCGTGGATTGAAAT # Left flank : CATACCCACCATTTTTTTGGAGTTAGGATTCACTATGATGATGATCATTACTTATGATGTAAACACGGAGACAGCGGCAGGACGAAAAAGACTTCGGAAAGTTGCAAAACAATGCCAGAATTACGGTCAAAGAGTTCAAAACTCAGTGTTTGAATGTATTATCGATCCGGCTCTTTTTAAAATTCTGCGTAATGAATTGATTCAGATTATGGATGCGGAGAAAGACAGTATCCGATTTTATAATTTGGGAAATAAATGGAAGAATCGCATTGAACATGTTGGGACAAAACATACAATGAATCTGGAAGATTCGTTAATTGTATGATTTTTTGCGAAGCAGAAGCGATCAGATGTCATGTCGTCGGGTTCGCACGAATTGTAATTTGATTCCACGAGTAAAATGAATTATTCAGACTTGGAGGAACTGAAAATCAACAAAAGGAAAAATCAATAAAGACAATATATAGGGCTTCGTACTTTTTTTTTACCTATATTTTGCT # Right flank : TTACAGATCGGATTGTGATGGTCGATTCGCCCAGGCTATCGGTAGCCTTCCGCCTGCAAGTTGAACAGGCGGGCGTAAGTACCATCGAGCTGCAGCAGCTCGGCATGCGAGCCGATTTCGAGGATTTTGCCCTCGGACAGGACAACGATGCGGTCCGCCATGCGGACGGTTGAAAAGCGGTGAGAGATCAGAACGGCGATACGGTCTCCAATTAATTCTCCAAAACGCCGAAAAACCTCATATTCGGCTTCTGCATCCAATGCCGAGGTGGGTTCATCCAGTACCAGCACTTCCGCTTCGCGCATGAACGCGCGCGCGAGGGCAATTTTTTGCCATTGTCCTCCGGACAGTTCCTGCCCTTTTTCCCAGCGCCTTCCCAGCATGGTATCGTAGCTGGCTGGCAGATTCTCAATGATGGGAGCTGCTCCTCCGCGCTGTGCGGCATCCCTGATGCGACGCATGTCCTCCAGGGCATCAACCTGGCCAAATCCGATATTCTC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCACGTGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //