Array 1 4627-3403 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADRGD010000002.1 Fusobacterium necrophorum subsp. funduliforme strain DD37 JD50_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 4626 36 100.0 30 .................................... CGTAAATGTGTGACTGAATTGTTTATCCAC 4560 36 100.0 30 .................................... AGTTCAGAAAGCACTTCCTGAAGCTGTTCG 4494 36 100.0 30 .................................... TTAATGATTGGTTTATTGCCTTTCAGTTGC 4428 36 100.0 30 .................................... CATGTTTGCAAGAAAAGTTAGAGGAGGTGA 4362 36 100.0 30 .................................... CATATCAAAATGTCTTAGAAGCCCTAAGAG 4296 36 100.0 30 .................................... AAGAGGTGTTTGGATATCAGGAAAGGTATA 4230 36 100.0 30 .................................... TTTTACGTCAGCTTTGCCAACGCCAAGTTT 4164 36 100.0 30 .................................... GAGGGCTTCCAAATTCTAAACTATAAAGGG 4098 36 100.0 30 .................................... TAAAACTATTGTAGCTATAAAAAGCATAGT 4032 36 100.0 30 .................................... GAAAATTTAGGAAACTGTAATTTTTTTTCA 3966 36 100.0 30 .................................... AATGGGCAAGGATATCAAGATGTTCCATTT 3900 36 100.0 30 .................................... AGATATAGGCTATACAACTGCTAGGCAACA 3834 36 100.0 30 .................................... AAGATGGGCAAACAATTATATTGGACTTTG 3768 36 97.2 30 ......A............................. TGCGAAAAAAGTAGGGTATCATAAAGCATT 3702 36 100.0 30 .................................... GCCTCGTTGATACGAGCTTGAGAGGTCGCT 3636 36 100.0 30 .................................... TTAATTATCGAAGATATTCCATACAATCTA 3570 36 100.0 30 .................................... TAGAAGAACTTTTGATGAATCTGGAAACTA 3504 36 100.0 30 .................................... TCGGAGTATGTTGTTCCGACTGTTAACGTT 3438 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 99.9 30 GTTTGAGAGTAATGTAACTTAAGATAGATCTGAAAC # Left flank : TTTTTCATCAGCTAAAGGAATATACTCTAAAAGATGAAATATATGCAGAAAAATTGGAAATGGAAGGAAGTTTGAGAAGCTTTTTATATAAAATAATAGATAATTTTTCTTATCCTTTGGAGATAGCCGAAAATATTGAATATGAGGACCTGTTTAAATTATTTCATATTCATATCAGTGAAAATTATGATAGTTATTTGGAAAAAATGATAGACTATTTGACATTATCATATGAGTTAGGTTTGATGAAATGTGTCATTTTTGTGAATTTAAAAACAATTTTTGGAGAAGAAGAATGTTGCAAATTATATCAACAGTGTTTTTATAAAAAAATTCCGATAATTCTCTTTGAAAATAGAGAATATGAATATACAATAAAAGAAGAAGAAAAAATTATTGTTGATTTCGATTTATGTGAAATTCGACTTTAATTCTAAAGTTACAACTACTTATCGTAAGAGTAGGTTATTCTTCTCAAAGTACGAATTTTCGTTTTTGAG # Right flank : AGTTAGGGCAAGCGAAAAAAGAAAAGACAAAAAGACATTTAAAATATATGTAACTGAATTAGACCGTGAAATTGAGTATAATCCTATTTTGCGGAAAGAATATCTGGATATATCCGGTACAAAAGATGAAGAATTATGAAATTATATACAATCGCTGCCTGATTTTTAGAAATGATGATTTAATAAGAAAATTAAAGTGTGAATTGAATCTGGTTGAAGTTGTAGATAAAGTTTTATCCGCATCTTCAATTTATGCTCTGACAAAATTAATTTTACAGCAATCTGAAATCGAAAATGGGGCTATATCGAAGTATGTAAAGTTGATGGAAAATGATATAAAAAACTAACCAAAAATGATTGGAAAATATCTACGATTGCCCACTATCTACAAAAAGGGTATAGTCTGAGAGAACTTCAATCATTGAGTTTCATAGAATTGTATTTTTTATATCAAAGTATTGACTTTTTTAATCATACTGGAGTATAACGAAAGGGGATGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAGTAATGTAACTTAAGATAGATCTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 26523-25760 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADRGD010000004.1 Fusobacterium necrophorum subsp. funduliforme strain DD37 JD50_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 26522 30 100.0 37 .............................. TTGAATTTAGCTGTCACAATTCCGCCAAACTCTTTAT 26455 30 100.0 36 .............................. AATATAGCATTTCTTATAACTGTTACTGGTTTATCA 26389 30 100.0 37 .............................. TAGGGAGGAAAGCTGTTTGATTCAGAAATTGGCTTGA 26322 30 100.0 35 .............................. TACTAACACGAGGGTTTTATAAAAAATCCTCACTT 26257 30 100.0 37 .............................. CGTCTACCGTAAGTGTTAAAAACATTGCTTTTTCACA 26190 30 100.0 37 .............................. TAAATATCCCATGTTCCGAAAAGGAACTATGGGTTAG 26123 30 100.0 37 .............................. AGACGCCGACCACCTCTCATCCACGCAACACGACCCA 26056 30 100.0 38 .............................. GATGGTTCTAGCAACAATGGACTTCTCTTCATGCTATC 25988 30 100.0 37 .............................. ATGCTTCCAAAGAAGCCTATTTGGGACAAAAAAACTA 25921 30 100.0 36 .............................. CATCAACTGTGAGTGTGAGAAACATAGCTTGCTCAC 25855 30 100.0 37 .............................. GCCACGCTTGCATCTTCTGTTTCTTCATTCGCAGAAA 25788 29 93.3 0 ..........................-..T | ========== ====== ====== ====== ============================== ====================================== ================== 12 30 99.4 37 GACTAAATCCAAGTAGATTGGAATTTTAAC # Left flank : AAAAATTTAGATACTGTGAAGAAAAATTATTGAATCTTTCTTTTTATAATCATCAAGATAAAAAGAAAGAGGAAAGTATAAGAGTATTTCTTATAAGAGATAAAAATAGTGATAATTTTAAATTTGAATCAATATTAGACGATGGCAGTAATAAGATATTTATTTCTAAAAATGGAAAAGAAATTACAATACAATGTTGTGATAAAGTATTAGAAACTTTAATAATAGAAAAAAATACTTTAAAGATAAGTTCAAATGGAAAAATTATTTCTTTAATTCCTCATTATTCTTATTCTATTGATGTAAAATATTAAAAAAATTTTTTGTCGACCTTTCATAGTGTAAAATTTATGCTAGGTCGACAAGAGTATAAAAGCATAATATTATGCTTTTTTCTATAATTGAAGTTGTATTTGAGGCATTATTTTGATATAATTTTACTTAGATAGACAATAAGGCTATTATAAATATTTCAAAATATTAGAGTAATAGTAATACTA # Right flank : ATTGTTAATAAAAATCTTTAGAAAATAACTTTAAATAATAGATTTTTTTTATTCAAAACTTGAAATAAGATTTACATAAAAGCTTAAAACGAGAGATTCGATTCTCTCTTTTTTCATAATTTCTTTCTTTTTTATATAAAGTTTGCTATACTGAAAGTGAAAACTCGTGAAAGGAAAAAAAGCATGGAAAAAGAAAAAATCAAGGAAATGTTGGAAGAACGCTTTAAAGTAATTCCTGCATACCCTAGAAAACGGCATATTCTTTTTTGGTATGATGGGCAGAAAGCATTTCAAGATATTATAGAGGAATTACAGCTTGATAAAGTAAAAATCTTTCGTTTGCAAAAAGGAATCAATCGAAATGGAGAAGAAATTGATACCAATCTTTTTAAAATAAAATATACTTTGGAGATTTTGGATACGGATTCTCATTATTTAATTTATAGTGCTAATCCAAGACCTTCTAAGCATGAAAATTATCTCTTAGATATAGAAAGCTA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GACTAAATCCAAGTAGATTGGAATTTTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [88.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //