Array 1 828067-825456 **** Predicted by CRISPRDetect 2.4 *** >NC_012880.1 Musicola paradisiaca Ech703, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 828066 28 100.0 33 ............................ ATTGTCCCGGCAAAGTCTTTTGCCTGTTCATTG 828005 28 100.0 32 ............................ TGATCCCGTTCCAGTTCAACATGGAGCAGACC 827945 28 100.0 32 ............................ ATGACGGTTTTGCCTGTGCTGGTGCAGTCTGC 827885 28 100.0 32 ............................ AAAAACTTCGATTCTGCTTCCTTGCCTGCCGT 827825 28 100.0 32 ............................ GTCACAGATATTTGAAGCTATCGAAGCGCTTA 827765 28 100.0 32 ............................ TGTGTGGCGCTCCAACTCCGTGCCCTTCTCAC 827705 28 100.0 32 ............................ ACTGCGAGGTTGTCATAATGGCAAATCTCACC 827645 28 100.0 32 ............................ GCTCGTTCGTCAGCGCGCCGGAACAACTCGGC 827585 28 100.0 32 ............................ AGGTGCAGCCAGACTTCAACGGCCTGCTGACC 827525 28 100.0 32 ............................ TTGCCGCGGCGATCGCCAGAGATGCGGACGGT 827465 28 100.0 32 ............................ GTCAACGTTCAGCTACAGACCAGCGCGGACAA 827405 28 100.0 32 ............................ ATGACCAGCTGACGCACAGTCATGCGGAATTC 827345 28 100.0 32 ............................ GGGAGGCAGAGACGATGACCATCATTCATGAC 827285 28 100.0 32 ............................ AGGGGCTGCACTGCAAATTGCTCTGGCATGGC 827225 28 100.0 32 ............................ GATAGCACTGGCCGCTTTTGCTTCTCCGGCAA 827165 28 100.0 33 ............................ CGGTGAAAATAAGCTCGCCGGTTGCCACCATTT 827104 28 100.0 32 ............................ GAATGCTGCGCCGTTCAGCCCAGCTAGACGCG 827044 28 100.0 32 ............................ ATTGGCGGGTTTGTTGCCTTATCCAACAACTG 826984 28 100.0 32 ............................ GTGAGGGCGCTTACGACGAGAAAGCCGATCAA 826924 28 100.0 32 ............................ CATCGATGATGCGAGTGTTACGGCGTTCGTTA 826864 28 100.0 32 ............................ GACCCCGAAGACAAACCCGCTAAAAAGACTCG 826804 28 100.0 32 ............................ ATCGGCAACGATGCGAAGTCCCGCCGTGCTAA 826744 28 100.0 32 ............................ ATAATGGGGTTATATGTTTTCCCTTTACCAAA 826684 28 100.0 32 ............................ CGCCCCCGCTGCACGTATACGGTAGAGGCCAT 826624 28 100.0 32 ............................ ATAAGTTCTACTGGCTTTTGTGTGGGGTGGAG 826564 28 100.0 32 ............................ ACTCACTTTTGAGGTCGGGGCTTCTTTTTATT 826504 28 100.0 32 ............................ ATCAAGGTCGATAAACAGGATTGAGCGCCCGA 826444 28 100.0 32 ............................ GATGAAATCTGGCACGTCCAGCACAGTTTTAT 826384 28 100.0 32 ............................ TTTCCCAGCCAGCGTCTTCAGTTGCAGAGCGC 826324 28 100.0 32 ............................ TCACCATTAGTGTCGAGAAGCCCGCACAACAT 826264 28 100.0 32 ............................ ATCCCCAATCCACACTCCAAGCATGTAGGCAT 826204 28 100.0 32 ............................ ATGACGGTTCAACCGCAATAACAACTCGGTTT 826144 28 100.0 32 ............................ ATTCATCGATAGAATCCTTTTTCTTATATTGC 826084 28 100.0 32 ............................ GGTACGGTCATTCTGTACTGACTACATGCTTC 826024 28 100.0 32 ............................ TATATCAATAAGAATTCCATGCTGACCATTTT 825964 28 100.0 32 ............................ GATATCGGTCACTACGAAGACGATGACCAAAT 825904 28 100.0 33 ............................ ACGTTACTCACTATCTGTGCGTGAGCGTACCAA 825843 28 100.0 32 ............................ TGTGCGGTCATCTGGTCAACGTAGGTGATATC 825783 28 100.0 32 ............................ GCGAGTCTGATTGTCAGTGCAAGCCGTGGCAT 825723 28 100.0 32 ............................ TTTTTGCGGCGACTCAACCAGCACGGCCTTAT 825663 28 100.0 32 ............................ CGCAGTAGAGCAGGTGAATCGCGAATGAATGC 825603 28 100.0 32 ............................ ACAATCGGCTGAGCACTGCCGTCCACCCTTAC 825543 28 100.0 32 ............................ AATCGCGGGATGGCGGTACATGAATTGATGAC 825483 28 78.6 0 ............A..A...AT.C....C | ========== ====== ====== ====== ============================ ================================= ================== 44 28 99.5 32 GTTCACTGCCGCGTAGGCAGCTTAGAAA # Left flank : GGAGTTGGCGGCGCTGGAACAAACCGGCTGGCTGAAAGGGCTGCGCGACTATACCGCCATCACCGAACCGCTACCGGTGCCTGCGGGGGCGAAACACCGCACCGTGCGCCGGGTGCAGGTAAAAAGCAGCGCCGAACGCCTGCGCCGCCGCGCGGTGAGCAAGGGCCGGATGACGGAGGATGAGGCCGCTACTCGCATTCCCTATGCGGTAGAAAAACGCAGTTCGCTGCCATATCTGCCGCTGCGCAGCCTTTCCAGCGGACAAACGTTTTTATTGTTTGTTGAGCACGGCCCGTTGCAGGACAAACCGGTCGCCGGAGCGTTCTCCAGCTACGGGTTAAGCGCTACCACCACCATCCCGTGGTTTTGACCCTTTTTTTGCGGCCAGTTCTAACGTATTGATTTTTAATACCGCAATCTGGCCGCCAGAAAAAAGGGGTTTTCCGGAAAAACGGCGGTTTTTCTTTAACAATCAGGTGATAAACGATAATTCGCTACAG # Right flank : GGTCGAAGTAAAGATCGGAAGCGACTCGCGCAGATGGGCAGGTTAAAGCGTTTAAATCGGCACATGTGCAATACGAGAATATTGCGACCGCACTGGCGGCTTGCAACGCTTCAACCTAAAGCAGGCTGAAAATGGGGCCTTGCGGCCCCGTCAGGATTTAGAACGACGTCCAGTCGTTGGCATCTGATGCAGATGCACGTTTTTCCCTGAACGACGCCGACGGCGTCGCCAATAATACCTGCGGCGCTGGCTGATACGTCTGCGGCTGGCGTTTCTCGCTTTGTTCCATCAAGTGAAATGCGCTGACCGCCTCCGACAACATCGCTGCCTGCGATTGGAGGGAAACTGCAGCCGATGCCGATTCCTCCACCAGCGCGGCGTTTTGCTGCGTGGTGGCGTCAATCTGCCCGACGGCCAGATTGACCTGGTTGATGCCATCACTTTGTTCGTGGCTGGCCTGAGAAATCTCGTTAATAATACTATGTACATCATGCACATAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCGTAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 836654-840459 **** Predicted by CRISPRDetect 2.4 *** >NC_012880.1 Musicola paradisiaca Ech703, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================================================= ================== 836654 28 100.0 32 ............................ ATTTTTCGGCGCCATGAGTCCAGCCGGTAAAT 836714 28 100.0 32 ............................ AGGATGTCGGCCTGAGCAAACCGAACACCGGA 836774 28 100.0 32 ............................ ACCGGGCGCCAGCAGCAAACCTTTCACCGAAC 836834 28 100.0 32 ............................ GCGATCTCTCGTCTGGTACTTCGTTGGATATC 836894 28 100.0 32 ............................ ACAGCAAGGCATGGACGCAGTGCGGGCCATGA 836954 28 100.0 32 ............................ ATGACGGTTCAACCGCAATAACAACTCGGTTT 837014 28 100.0 32 ............................ ATCTGGTCAATCTCGGCAAGGCGTTGCAGGAC 837074 28 100.0 32 ............................ AAAGATCGTGTTCATTTTGAATGGTTTGGGCC 837134 28 100.0 32 ............................ TAACGGCAAGATCGATAAGATTATCGAGTTGC 837194 28 100.0 32 ............................ TCTTCGAATCCCTGCTTGAGCGATGAAAGCAA 837254 28 100.0 32 ............................ TGGCACGACAGCAGGAGATGCAAACAGGGAGG 837314 28 100.0 32 ............................ AGCCCAAAGCATCGCGGAAAATGGCATCAAAC 837374 28 100.0 32 ............................ GTGGTCTGAGCACAATACAGAAGCGTTCGCCG 837434 28 100.0 32 ............................ AGGAATGTCTTTGCATCAGCCGGTCGAGGCGT 837494 28 100.0 32 ............................ CATCACAATTTACGCTGGGGAGGTGATATGGA 837554 28 100.0 32 ............................ TGCAAAATGACTTCATTGTCTGGCCTGCAACC 837614 28 100.0 32 ............................ GAGCGTGCTCAGCAAATCAGACAGGGAATGAA 837674 28 100.0 32 ............................ GAAATCATATGGGTGGCATTCGGGAACCCGAC 837734 28 100.0 32 ............................ AATGTGTCAGGCGTTACCGTCGGCACTGGCTG 837794 28 100.0 32 ............................ TTGATGAGGTGACTTTTGATGGCGTGGCAGAT 837854 28 100.0 32 ............................ AATCTCTTTGTTTGGGCCACGCTTTTCGGGTA 837914 28 100.0 33 ............................ GCAGATGCTAAACAAGCGCGGCGAGATGTACAA 837975 28 100.0 32 ............................ TTATCGCCTACAAACCAACGGCAACCATCCTG 838035 28 100.0 32 ............................ ACCATACAGAACACTCGCGGCAGATGGCTTAT 838095 28 100.0 32 ............................ AGTCTCGACGCCCAATCCTGCGCCAGCGCATT 838155 28 100.0 32 ............................ TCTTTCAGCATCGATTCCTGCCACTTGCGCGG 838215 28 100.0 32 ............................ AGGTCAGCGAAGGAGACAGTGATCAGCCTGCC 838275 28 100.0 32 ............................ CAAACACCTCGCGCCCCAGCACATTCTGCATA 838335 28 100.0 32 ............................ GTTACACCAAGTTTGGAAAGCTTTTCAAATAT 838395 28 100.0 32 ............................ TGTGGCACTGGAATATGAGAATCAATCACTTA 838455 28 100.0 32 ............................ AGCAGATCACGGCGGTAGAGGTCGTACCCTGT 838515 28 100.0 32 ............................ AACCATCAACGGCGCTGGGGCCAGCGTTATAA 838575 28 100.0 32 ............................ CAGTGGGTGCAGCCATCGCGATCTGTTGCTTT 838635 28 100.0 32 ............................ AGTGGATAGAAGCGTTTTAAAAACTCTTCACG 838695 28 100.0 32 ............................ AGTCTCGACGCCCAATCCTGCGCCAGCGCATT 838755 28 100.0 32 ............................ CGTTTGAAAGGCAATCTGCCGCCTAAATTCTT 838815 28 100.0 32 ............................ TGTTACTCAAAAATTGCTGGGGCTACAGTATC 838875 28 100.0 32 ............................ GTAGCGAGCACACAGAAACTAGTGATAAGCGC 838935 28 100.0 32 ............................ CTGAGGACTATGTGGAGTCTCTTCGGGCCACC 838995 28 100.0 32 ............................ TGTTGGCGGATGAAGACTTGCCCGACGAGGCG 839055 28 100.0 32 ............................ AATGCGTATGGCGTGAGCATGATTTCAGTAGA 839115 28 100.0 32 ............................ GCGAACCAAAAAGAAATGTCCATCTTGCGGTA 839175 28 100.0 32 ............................ GTAACCGCCAGGTGCCAGATACTTACGTAGCG 839235 28 100.0 32 ............................ GCAACCCTGGAAAGAAGGGGAACCCAAAACTC 839295 28 100.0 32 ............................ TGAGTACTGCCAGTCTATTGTTGAATATTTCT 839355 28 100.0 32 ............................ AAGGGGGCGCGCTTAGCTCTCGCTATCAACAC 839415 28 100.0 32 ............................ GCCGCCGCCGGAAGTGATGCAGGGTATGCCGC 839475 28 100.0 32 ............................ AAAAGAGGATGTGAAAGACAGGATAGGGCGCT 839535 28 100.0 32 ............................ CGAAGCGCTCAGCCGTGCGGAAGTTGACGGAA 839595 28 100.0 32 ............................ ATTGCTTCCACCGCCCAACATATTGTCCTCAG 839655 28 100.0 32 ............................ TGTCAGCGCCTTAAGGTATTGGTTAGCACCGT 839715 28 100.0 32 ............................ TAATTCCATGCCTCTCAAATGCTTCGATAGAT 839775 28 100.0 32 ............................ GATCTGCTCGACATTCCAGCAGATGAAGTAAA 839835 28 100.0 32 ............................ ATCGCCAATGGATTTAAGCCCGGTGCCGTAGC 839895 28 100.0 32 ............................ GTTGTGGTGGTCACCGGCTGGATCTCCATCAA 839955 28 100.0 32 ............................ TTATCGCGGTTTTCAGCAAGCCATTCATCGAT 840015 28 100.0 32 ............................ ACGACAGATGCGGCGGGGAACTGCTCGTCATC 840075 28 100.0 32 ............................ GTAGCGAAGAACGCCTTCGAGCAATATCAGAA 840135 28 100.0 32 ............................ GATTTATGTCAGGGTTTTGCAACACTCCAGCG 840195 28 100.0 32 ............................ AGGCACGACCGCGACGCACGATAGCGTCAGCA 840255 28 100.0 32 ............................ ACCTGCTGAACTTTGTCAGGCTGGCTGGCTGT 840315 28 96.4 89 ..........................G. TGGTCGGTGCGTTGCGTGGTGCTGGGAGAGGGGGCACTACGTGCTGGTTGCGAAGAAATGGAATCGAGTGGGATGGCGGATAGGGCGAT 840432 28 71.4 0 .......A.T..T.CAA....G...C.. | ========== ====== ====== ====== ============================ ========================================================================================= ================== 63 28 99.5 33 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : TCACCGAGGTGCCGGTGCCGAGCATTACCACGCTGGTATTAGCGATAGGGATATTCCAGTACAGCGACTGATTTCCTTCTTCAGTGACATATTCCACCCGTCCGCCATTCACCAAAATACGGCAATGCTGGAGGTAATAAATATTGGCGCGTTTGGAGTGCAGAATGGTTTTTAAATCCGACGGGCTGAATACGTTATCCATAAAACCGTTTCTCTTAGGTAGCGATAAAACAATCCCATCCTACGTAATAACACGCAGGCTAATAATTCATTGAGAAATACGTAATCTACTGGAAAGTAACGAGAATCAGCCTAGCACAACCCAAACCAGAAAATGAATGACGCCAGAAACACTTTTCCCGCTTCAATACCCTTTTTTTCAGCCACCTTTCTCAGTATTGAAAAATCAATAAGTTACCGACAGCCGAAAAAAAAGGGTCTGACAGCGAAAATCGACAATTGCAGGCTGAAATACAACGGGTTAGAGTCAACGGGCTACA # Right flank : ACGCCAGAGGAATCGATGGGGGAGAGTACAAAGGTAAAAAAATCCCCCGAGCGGAAACCGGCGGGGGACGAGGATTGACCAACGAAATTACTGTACAGCAGCGAAAGCGTCGGCGACGCGCTGAACGTTGCCGTGATTCAGACCTGCCATGCAAACCCGACCGCTGGCGATCAGATAAACGCCGAACTCTTCACGCAGGCGATCGACCTGTTCCGGGCTGAAACCGGTATAGCTGAACATGCCGCGCTGGGTCAGCAGGTAATCGAAATCACGTTCCGGCAGGGCCTTTTTCAATGTGTTAACCAGCGTTTGGCGCATTTCCTGGATGCGTACTCGCATGGCTTCCACTTCCGCTTTCCAACTGGCGTTGAGTGCCGCGTCGTTCAGTACCCGCGATACAATCTGTGCCCCGAAGTTCGGCGGGCTGGAGTAGTTACGGCGCACGGTAGCCTTCAATTGGCCCAGTACGCGGGCGGCGGCATCGCTGTCTTCGCACACGA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 3904750-3904537 **** Predicted by CRISPRDetect 2.4 *** >NC_012880.1 Musicola paradisiaca Ech703, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3904749 29 100.0 32 ............................. CGCGCAGCTGGACATTGAGCGTCACAAACTGA 3904688 29 100.0 32 ............................. CGATACGGTAATCATATTTGATCCCCATTCTC 3904627 29 100.0 32 ............................. GTTTTCGGCGTAACCGGGATCGTGAATGTGAC 3904566 29 93.1 0 ............T...............A | G [3904549] ========== ====== ====== ====== ============================= ================================ ================== 4 29 98.3 32 GTGTTCCCCACACCCGTGGGGATAAACCG # Left flank : TTGTTTTTTCGTCAGCTGTTTGACGCGATATTCCCACTTCAGCGCGGCGGATCGATCATTGACGACGCAGTGATAGACCAGCGCCAGTGCTCCTTTTCCCCGCAATGAACGCGCCCCTTTTCCTGCCTGATGCTGCGCCAACCTGCGTGTGACGTCGGTGGTGATGCCGGTGTAAAGCTGGCCGCCGGTCGTGCGTAAAATATAGAGAAACCATAGGGTTGTCGATGTCGTCACAGGAATGCCCGCAGAGTGTGTTATCGGCACTATCTTACGGCCCCGACGTCTGAAGAAAAGCGGATTTCCGATGGGCTACGATAGCCTTGCCGTGGTAGCCGTAATGAGCGGCTCGCTACCGGTGCGTGGTGCGACGGACAATATTCGCGGTGCCGTATGACAGACGCTATAGTTATCAAAGCGTTACCGTTCTTTATCAGCCTGGAAAAATCGGTGAATTTTTGTGAGTATAAAAATAGATTTGAAAACAATAGGATATATTTAGC # Right flank : CGCTGTCCGTGCTCAATTTCCCTTTACCTGGATGCGGGTGTTTCCCCTATCCAGACGGTGGTCTTTTGAATGTGATAAAAATAACATTATTAATTCATTTTTGTTATTTTATAATCGATCTGTGTGATTATGAGAACATTGCTCACTGGGGCCGCCAGATAAGCTTTATCTGCGGGCGGCCATTGGGTTTGGCTGAATGGGTGGGAGTATTGCTGTATGACTGAATTAACTACCGTGGCGCAGCGTGCGCTGGGGCTGATGGACTTGACCACACTGAATGACGACGATACCGATGAAAAGGTGATTGCTCTGTGTCGTCAGGCCAGCAGCCCGGCGGGAAAAACCGCCGCCGTCTGCATTTATCCGCGTTTTGTGCCGCTGGCGCGTAAGACGCTGTGCGAGCAGGGAACGCCGGAGGTGCGTATTGCCACCGTCACTAATTTTCCGCACGGTAATGACGACATCGACGTCGCGCTGGCTGAAACCCGCGCCGCTATTGC # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACACCCGTGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 4160748-4159926 **** Predicted by CRISPRDetect 2.4 *** >NC_012880.1 Musicola paradisiaca Ech703, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4160747 29 100.0 32 ............................. CGTACCGGCACCGACTCCACCGGCAGACGGAA 4160686 29 100.0 32 ............................. GATAAATAAGTAAAAACATGTTATTCCACAGG 4160625 29 100.0 32 ............................. GTAATGTTATGAGCGCCGCCGCCGATGCTGGT 4160564 29 100.0 32 ............................. TGTGTTTTGCTCATAGTATGATAGAATATCAG 4160503 29 100.0 32 ............................. TGAGGCGCTAGTCGAGAAGGCCGGGCGTGAAA 4160442 29 100.0 32 ............................. TGGGCGACTCAGGATAGTTTCTGGTGCGGCAA 4160381 29 100.0 32 ............................. TGTTCACGCGCATCTTCCACCCACTGACCGCC 4160320 29 100.0 32 ............................. ATTACATCGATCAGAATTTTGGCGGCAGCCGG 4160259 29 100.0 32 ............................. ATACGGAGCGCCCCACACAGGCGTCGTGCCGA 4160198 29 100.0 32 ............................. AGTGCTTGCACTATAAACAAACAGAATAGGCG 4160137 29 100.0 32 ............................. CCGTGATGATTGCGACATCACGGCTTTATTTT 4160076 29 100.0 32 ............................. TGTGACTCGTGGCCGAGATGTCGGATATCTCA 4160015 29 100.0 32 ............................. TAACGAAAGGGGCGTCAGATGTTAAAGAAACT 4159954 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTGATTGAGGACGTGCTGGCCGCCGGTGAGATAGAGCCGCCGCAGGCGCCGCCGGACGCGCAACCACCGGCCATTCCCGAACCGACGCCGTTTGGCGATGCCGGACACCGGGGGCATGGCGCATGAGCATGCTGGTGGTGGTCACGGAAAATGTACCGCCGCGTTTGCGCGGCCGACTGGCGGTCTGGCTGCTGGAGGTGCGTGCCGGGGTCTATGTGGGCGACACCTCGCGGCGGATTCGCGAAATGATCTGGCAGCAGGTGGTGGAACTGGCGGAACAAGGTAATGTGGTGATGGCCTGGGCCACCAATACTGAGTCCGGTTTCGAGTTCCAAACCTTCGGTGAAAACCGCCGGATGCCGGTGGATCTCGACGGACTGCGATTAGTCTCTTTTCACCCTGTTGAAAATCAGTGAGTTAGCGTTCTTTAACAACCGGGAAAAATCGGTGGAATTTTATTGCCTTTAAAATGCCTTATAAAACAGGTATATATTTTTAGA # Right flank : CCAAATTGATATATCAACAAAAGCCGCTAACGGTGTACCGAACTGCTGTTGCTGGCACAGCGTCAGTTTGGCGCGGCGTAACAACCATGACTGAATTGGCGTCTATTAGTTGCGGGCCCGGTTGGGGCTGTTCGCTTGTAATTCGCGGACAAACCTGTCTTTTGCGTAAGTGAAGTCTTGAACGGTTTTCTCTGTACCCCATCCGACCCGGCGTACCAATGAACCGAAAAAATTGTCGGGAATGCAGAAATCCGATTTATCTATGACCTCTGCATAAGGGCTGTCTATGCGAACCAGTAAGGAGAGAACCTGGGTGCGCTTAAGCGCATAGCCGCGTTGTCGACAAAAATCGGCAAGGGCTGTTTCGGTATAAAAGAAAATATGTTGGCCACAATCCGGGGCGAGATAATCCCAGTCTTTTCCCTGCTGCTCATAAAACTGTGTCGAGAACACAATGAGATCTGCGTTTGTAGCAAAGATTTCTTCAAGGGATTGCTGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //