Array 1 110690-107846 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPLO01000003.1 Haloferax sp. Atlit-109R P_contig000003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 110689 30 100.0 36 .............................. GGCCATTGACGCCGCACGTGGCGACGACGAAAGCCA 110623 30 100.0 36 .............................. GTCGCGCTCGTTGTCGGCGCCGAGTGGGACGAGCAG 110557 30 100.0 35 .............................. TGCTCGCGGTCGGTCCGCTCCGACGACGTCTGCCG 110492 30 100.0 35 .............................. CCGGTGCGCTGGCGCGAGATGAGCATCTCGTGGAG 110427 30 100.0 37 .............................. TCCCGTATACGCCCACCACCGAACCTTCATGGATCCA 110360 30 100.0 36 .............................. GGAGGTAGTTCCGGAGGACCGCCCGCGAGTCGATGA 110294 30 100.0 35 .............................. GTGAAGTTTCAGCGTCGGATGTTGCGTCACTCATT 110229 30 100.0 34 .............................. AACGCACGGGATGAGTGACGCACTCGACCCACCC 110165 30 100.0 35 .............................. GTCGATGAGTCGCCGCACATCGGCCTCGGTGAGGT 110100 30 100.0 36 .............................. ACGGTGCAACTGAACGGCAAGGAACACCCCTACGGC 110034 30 100.0 36 .............................. GCCGAGTGCATCGGGTGCGGCGACCCGGTCGGAAGG 109968 30 100.0 34 .............................. TACTTATAGCTTTCCATAGAACACTATGGTTGGG 109904 30 100.0 37 .............................. TTTCTCCCGACCGTCGCGTCGCTCGGTTCGGATGAAC 109837 30 100.0 37 .............................. GTGAACGAATCGTCTTCGGTGTGGCTGAGTTCGACCG 109770 30 100.0 35 .............................. TGGCTGGTTGTCTCGACTCCCGGTTGTCGGTGGGT 109705 30 100.0 34 .............................. TCGGTACGAAGTTCCTCACACTCGGTGCGCAACT 109641 30 100.0 36 .............................. GTCGACAGTCGGCTCGGACTCCCGACGTGGCTCATG 109575 30 100.0 33 .............................. CCGCTCGCATGGCTCATAGTCCTCGGCGGGGGG 109512 30 100.0 35 .............................. CGGGCCTCACCTCCCGGGGTCAGAATCGATAGATA 109447 30 100.0 35 .............................. GGGTAGTGTGGGTTGGTCATTTCAGGTCTATTTTC 109382 30 100.0 35 .............................. GTCTTTTGTCTCGCGTTTAACTCGTGATCGTTCGA 109317 30 100.0 32 .............................. CTCGAACGGTGTGTGCCTGCGGGGGATCAGGG 109255 30 100.0 34 .............................. AGCTACGACGAGACCCTTAACGGCCGCGGAGACA 109191 30 100.0 35 .............................. ACTACGCGCCAGTCCCCGATAACGCCGCTGCGGAC 109126 30 100.0 37 .............................. GCGAATCACTTGACCACCTCCGAGAGGTGATGTCCTG 109059 30 100.0 32 .............................. GCGTATCCTTGCACGAATACGTTGCCATGCTT 108997 30 100.0 37 .............................. CCGCCACCGTATCCAGCGCGGAAGACGACGAGGTCGT 108930 30 100.0 37 .............................. GATTTGGACTCCCGCGCATCGTCATCGGTCGGGTGCA 108863 30 100.0 36 .............................. GTTCAGTGTTGACATGGAGTTGTTTTATTTGGGCGA 108797 30 100.0 36 .............................. GTTTCAGATGAGTTGTTGACAAGTTGATGGTGCCCC 108731 30 100.0 35 .............................. TGTCTGTCCGAGACTCCTCATACTGGTCCCAGTAT 108666 30 100.0 38 .............................. TAACCCCAACAGAATGCCCGGGAGAGTCACGAATAGCA 108598 30 100.0 38 .............................. GGCAGGTCGCTCAGGAAGTCAACGGCGACTCGTTCAGT 108530 30 100.0 34 .............................. GTCGACCGCTCAGTTGTCGCCATCGTCCTCACCT 108466 30 100.0 37 .............................. ACCCAGATGCTCACGCGCGGCGTCGTCGAGTGCAGTT 108399 30 100.0 35 .............................. TCCCGATTGAGATACTCCCGTGGTCGCCCCCATCT 108334 30 100.0 36 .............................. GCCATCGCGTCGCCCATCGCTCGGTCCTCCGACGAG 108268 30 100.0 37 .............................. TGAGGTCGACCTTAACGGAGGGTCCTCATGAGCGTCG 108201 30 100.0 35 .............................. AGTTCACCGGCGACATCGAGGATGGCGAGGACGGC 108136 30 100.0 35 .............................. ATCCGCGACGATGGTCCCCTCTCTCGTCTCGACCT 108071 30 100.0 34 .............................. TCCAGACCGGGCAAGCCATCGGCGATGTCGGGTC 108007 30 100.0 35 .............................. GATGGGCGTCCAGTACCACTGCGGGTCGCTGACGT 107942 30 100.0 37 .............................. CCATCCCGACCACCGACTCCAGTTCCTGCCCGCCCGC 107875 30 83.3 0 .......G.......G......A..A..T. | ========== ====== ====== ====== ============================== ====================================== ================== 44 30 99.6 35 GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Left flank : CGCTCGAACGAACCGTCGAGCATCCGAAGCTCAACCGCAAAGTGAGCTATCAGTACCTGATGCGGCTCGAAGCGTACAAACTCAAAAAGCATCTGCTGACCGGAGAGGAGTACGAGCCCTTCGAACGGTGGTGGTGAAATGTACGTCGTGATGGTGTACGACCTCGAAGCCGAACGGACGCACAAAGCGCTCAAGCTTGGGCGACGCTATCTGACGCACGTTCAGAACTCCGTCCTCGAAGGCGAAATTTCAGAGGGTGATTTAGCGACGCTTCGAAACGAGGTCGAAGACCTGTTGAAGCCGGGTGAGTCAACGATTATCTACGAACTGTCTTCTGACACACTTCTCAACCGCTCGGTCTACGGCGACGACCCGACCGACGAGAAACGCTTCCTCTGAGTTTCCGTCGACCCCCCGGTCGGCTCGGGTTACTGACGGTCGACGGAACTTCTTTATCGTAGTCACCCCTCAGAGAGTCTGTGTCCTCGATATCGGACATG # Right flank : GAAAACTCGTCGGGACGAAACCACGCGAAAGAAACAAAACCCGGCGCTACGCCGCCTCGGCGTACATCGCCACCAGCTCGTCCGCGTTCGACTGCCACGAGTAGCGCTCTTCGATGGCCGAGCGGTTCGTCCGACCCATGCGGACGGCTTCCGCGGGGTCGGAGACGAGTCGGGCGAGCGCCCGCGCCAGTTCCTCGGCGTCGCCGGGTGCGACGAGAATCCCGCGGTCGTCGGTGATGACCTCGGGGATGCTGCCGACGGGCGTGGTCACGATGGCGTTGCCGCCGGCCATGCCTTCGAGCATGGCGATTGGAAGCCCCTCGGCGTAAGTCGGGAGGACGAACACGGTTCCGCGGCTGATGAGGTCGCGTTTGTCTTCCTCGGAGAGGAAGCCGAGGTACGAGACGTTGTCGTGGGCGGCGGCGACCGCCTCGGCGCGGTCGGCGTGGGGGCCGCGGCCGCCGATGCTCACCACGAAGTCGAGGCCGGGCGTGGATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 122501-121085 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPLO01000003.1 Haloferax sp. Atlit-109R P_contig000003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 122500 30 100.0 35 .............................. GAATATATGTATCGCCGTCTCGAATTGCGCAGGTG 122435 30 100.0 36 .............................. GAAGATACTGATACCGAAGTCGGCTAGTTCTAGACA 122369 30 100.0 36 .............................. AGGCTTCCCGTCGTGCTGTCTCGCGCACTCAGGGCA 122303 30 100.0 36 .............................. CGTCGTTTGGGGGGTCTCCGTGGATGCCGTGCCCAG 122237 30 100.0 35 .............................. TCCCGTACACGCCCACCACAGTACCCTCGTGTACC 122172 30 100.0 36 .............................. CTGGAGCAACTCGCCGAAGGGTGTCGTCGTCCACGT 122106 30 100.0 35 .............................. GGACTTCGACCACCCCGTCGAGCGTGAACCACGTG 122041 30 100.0 35 .............................. TACTAGCGACAAGCGTGTCAGCCGTCGGCTTGAGG 121976 30 100.0 38 .............................. TCGACTCATTCGGACGCGCGTTGTGACCGTTGTGCCGA 121908 30 100.0 35 .............................. GGCCAGTCGAACCGGAGGTAATCGTGGAGGAAATC 121843 30 100.0 38 .............................. GGACGCAGTAGCCGTTTGGCTTGCAATGCTGGATAAAC 121775 30 100.0 36 .............................. TTCGAGTGTGAAGGGGATATCCTCCAACGCCCGGCA 121709 30 100.0 36 .............................. AAACGTCGCGTATTCTGGATGGAGTTCGGGGCCAGA 121643 30 100.0 37 .............................. GAGTTCGTGACCGGGGTTCCGGTGACGGTGGCGACCG 121576 30 100.0 35 .............................. GACTGCTGGATGGCGAAGGCCTCGGAGAACATCGA 121511 30 100.0 35 .............................. CAAACGACCTACTCGCGGAGGTCGTCGGACTCGAC 121446 30 100.0 36 .............................. AAATCGCAAAACGCCGGTCAACTCGTTCCGAACGAG 121380 30 100.0 37 .............................. TGTCGTATCCCTACCGAGCGCCTCCATCGCGAGGAGC 121313 30 100.0 37 .............................. AGCACGCCGAAAGCGACGGTGGACGACGGTTTGGGCG 121246 30 100.0 35 .............................. AACATGCCGAACAACTGGAAGGAAGCCCTGTGGCA 121181 30 100.0 37 .............................. TCAACCTCACATTGGTCTGAACATTCATTGCTACATC 121114 30 90.0 0 ....................A.G......T | ========== ====== ====== ====== ============================== ====================================== ================== 22 30 99.5 36 GTTTCAGACGAACCCTTGTGGGATTGAAGC # Left flank : ACCTCCGTCGACCGCATCCGCGAGCGCCTCGTCGGCGACGTCCACACCTACGGCGGCCGCTCCACTATCGGCGACTGGTACCGGACGAACCGCGCGCTCCGCGAGCGCATCGACGACCTGCTCGACTCGGCGTGCGAGCGCCCGTACTTCGACGCCGACGAGATTCGCCGCCTCCAGCGCGAGGAGCGCACGGGCGAAGCCGAACACATGAGCGCCATCTCCGGCATCATCACCGGCGAGCTCTGGGTCCGCAAATACATCGACCGCGAAGGTCGCGGCGTCGAGGAAGGTCCCGTCGGTGCGGCGGAAGCCGAAGACGCGCCGCAACCGGCCGACTGAGTTACTCGAACCACTCGATGGACTGTCCAGTCGTGTGGAACTGCGATTCGTTTCCGTCGACCCCCCGGGGAAGCGAGGACTACTGAGGGTCGACGGAAACGTTCTTTTGAATTCGGTTCGTACGCGACGTTACGCCCGTGATTTCGGGACGGTTTCAGACG # Right flank : GAGCCCGAGTGGACGGCCGTGCTTCTCAGTGGCGAGGTTCAGCAGAAGCCGTTGTGTAGAGAAACTGAAGCGGTTCGTCAGTAGAATCACTCAAATATTTGCATGGGACCAACCGCTGTTAAAGACCAACAATACACAATCCTGTATAGAACTTAGATTACTTCAGAGATAACCGGGATTTTGAGTTCGGATATAGATAGGATACACAGATGTGCATAGATATAAGTGAGTGGGGTAGTATAGGTTAAAGAGGGCGCTGTTGACACGCCCGGCCAGAATACCAGTTCCACCGGACGTGTAAACCAACCCGGCAACCAGTAGTTTGACTCAGGGCTGCACGAGCAGGCAGTTGCTCGTTGCCCCTCGTGAGTCTTATCTGTTTGGTTGCTAGGTAGCCCCCTCCGCAACAACGATGAACCAAACAACACATACAAAACGAGGTAAGGTGTGTGTCACCAATGACCAGTTACAACTCAGTCATAAACTAATTAGCACGCTTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 355184-357678 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPLO01000002.1 Haloferax sp. Atlit-109R P_contig000002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 355184 30 100.0 37 .............................. AAAGACGTACTCTCGCTCGGCGGTCCAGTTCGGCGAC 355251 30 100.0 38 .............................. TCACTGCTCATCACCCAACTCAAGAGCCATGACTAACG 355319 30 100.0 36 .............................. CTGCGGCGACTGCGGCGCGGTAGTGTTTCCAGCTTT 355385 30 100.0 36 .............................. CATGTCCGCCTCGCTAACATTGTCGCTGTGGAAATA 355451 30 100.0 37 .............................. AACGGCGCGCGTGGGGGCGACGGAATGGGGACAGACA 355518 30 100.0 37 .............................. TCAAGCCGAGGACAACAATTCCACGGGTTTGAAGACC 355585 30 100.0 36 .............................. GGCTCCGTATGCTGGTCCGTCGCCGGAACAGTAGTT 355651 30 100.0 36 .............................. ACGAAGGAAGAACTCGCAGGCATCCTGATGGCGCTG 355717 30 100.0 36 .............................. CGCCCACTCCCGGCTGCGGCTGCCTTGGCTGTCGCG 355783 30 100.0 33 .............................. ACCACCTACCTCGAAGGGCAGGCAATCGACCTG 355846 30 100.0 38 .............................. CTGCGCCGTGACCGTCTTCGTCTGCATCGGTCCGTCGG 355914 30 100.0 38 .............................. TACTTATAGCTTTCCATAGAACACTATGGTTGGGAGTT 355982 30 100.0 37 .............................. GGACCCGGAAAACCTCGCGTTCTTCGAGTTGAACGGC 356049 30 100.0 36 .............................. ATCCTGAAAACTTAGACTCACAAGAATAGCAAACTT 356115 30 100.0 37 .............................. GCTCGTGACATCCGCCTCGAATGGGATGTCTAATGAA 356182 30 100.0 33 .............................. GAATGTGTCGGGTGCGGCTACCAGACGCCACTT 356245 30 100.0 37 .............................. GAAGCAGGACACCGGTCACGGCTCCAAGAAATACTGC 356312 30 100.0 35 .............................. ACATGGGGTTTAACGACGATCCAACCGCGGACTTT 356377 30 100.0 35 .............................. ATATCCCTCGGATCGGGAGAGATGATCTGAAAATG 356442 30 100.0 38 .............................. TTCTCCGAACCACGGGTATCGATGATCGTTTCATACTT 356510 30 100.0 38 .............................. TCCCACCACCTTGTCTTTGTGAGGACCATACGTTACCA 356578 30 100.0 35 .............................. GACGAGCGGAAGGACGACGAGGAGCTCGCGCCCTA 356643 30 100.0 36 .............................. CGCGTGCTGGCCGACCGACTCGCGCCCGACGACGCG 356709 30 100.0 37 .............................. TCGGCGGTGCGGGCGGCGCGTTGCTGAACGTTCAGCA 356776 30 100.0 37 .............................. AGACACTTGCGAGACTGGAAAGAGCGGCTCGACGGGA 356843 30 100.0 38 .............................. CAGTGACCATCAGGAGGTTGGTCCCAGTCACGTCGAAC 356911 30 100.0 38 .............................. GGTGGTTCGGTGGGAGTTCGTCCTCGACCCGGTGGTAA 356979 30 100.0 38 .............................. CCGCGTCGTCGATCCGGATGCGACGCACACGCTCGTTG 357047 30 100.0 37 .............................. GCGCGAGGAGTGGATTAACTGGGACCGCGGGATGATT 357114 30 100.0 36 .............................. ACGCGGTGGCGCTCGCCGTTCGTCAACGCCGCGAGC 357180 30 100.0 34 .............................. TCGAACGGGCCATCGACGAAGCAAAAGTCGAGTT 357244 30 100.0 37 .............................. CTTGATGCGGTCGTTCATCCGGTTGAGACACCGCAGA 357311 30 100.0 37 .............................. TGGGAGTTGCCGCGACCGAACGCGATGCCCTCCCAGT 357378 30 100.0 36 .............................. GACCACGACCCAGAACACCAAATCAAGGAGACGCAC 357444 30 100.0 39 .............................. CAGCCTGACCCGGACGTGCAAAGGCATCCTGCGATGAGA 357513 30 100.0 37 .............................. GTAGCCAACAACGCGCCGGACGAACCCCCGGATTTGC 357580 30 100.0 39 .............................. GTCCAACGTTGCTTGCTCCGTCTCGGTCGTGCTCTGAGA 357649 30 76.7 0 ...............G.A.C.AAG.....A | ========== ====== ====== ====== ============================== ======================================= ================== 38 30 99.4 37 GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Left flank : CCCGCTCGTCGGTGAGTCGCTCACCGACTTCCGCGGCGTCGTCTACGCGCCCTCCATCATCGACAACTTCGAGGCGCTCCGCGCCGGCGAGCGCTCGTTCGACGAGATTGCCGCGCCGACGATGACGCTCGCCGCCGACACGAACGTCAGCGACGCGTTCGACCAGTTCCAAGCCGAGGACCAGGAACTCGCGCTCGTCCTGCGGGACGGCGAGGTCGTCGGCCTCCTCACCGCGACCGACGCCCTCGAAGCGGTCATGGGCGAACTCGACGACCCGCTCGACTAGCGCTCTCGACGCTCCCCCTCGAATTTTTTCGGCGTGCGGCCGCGCCCCGCGGACGAACCGACCGCGTGACGACTGCCCGAGTGGTTCTCGACACCGCCAGTGACGACCCGACGTTTTCGTCGACCCCCCGGGGGTTTCGGGTGAATTGAGGGTCGACGGAAACACTCTTTTGAATTCGGGTGATACACGTCATTGTACCCGTGAATTCGGGATG # Right flank : AATCAGGGGACGGCATTGCGATGCCCGTATTAGTCAATCACGTACTGAAGTCGAAGAATGCCCGGGGTGGGCTCCGAACCCACGATCTCCGCATGTCCCAGGTGCGAGGCCGGCATGACCTCGCGGGGGGCGGAGGCTTCCAAGGCGTTCCGCACCGATTGTGAAACCCTATGAGTGCGGCGCTATGTCCAGCTAAGCCACCCGGGCTCAACTTCCCGTTGTGTGCTGGTTGTATTTAAGCTTCTCATCTCCGACGACCGCGGGACGGGTCACCACGGCACTCGATTCGAGTCATCACCCGCGGATTTATGTCCCAACACCGGGTGCACACACGCATGAGCCAACCGGAGATCGTCCAGTCCGTCCTCGGAGAGGAAGACGTGGTGACCCGCGTCCACCTCGGGGGCGAGGACGAACTGTTTGTAACTCCGACGCGGACGCTCGTCTATCGGGCCGAAGGCCTCCTCTCGGACGAGTCCGTCGACGAGTTCTCGCACGCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.10,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //