Array 1 1514107-1514685 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP055955.1 Escherichia fergusonii strain RHB18-C08 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1514107 29 100.0 32 ............................. CGTAACGATAAAAACGTCACTCTTACGCAATT 1514168 29 100.0 32 ............................. AGGATCTTTTCTTGATATCAAACTGGTCTGGT 1514229 29 100.0 32 ............................. GTTTACATGCAGGCGCTGGTCACGTGGGCTGC 1514290 29 100.0 32 ............................. ATTACGGAATGGATGAAAACTATAACTATCTC 1514351 29 100.0 32 ............................. CCCAGTGGCTCCCATGCCAGGCTCGCGGCTTC 1514412 29 100.0 33 ............................. CAGGGATACCGCTGCGTTTACCTCCTGGTTGGA 1514474 29 100.0 32 ............................. CAATATCCCGCACCCGGAACACTGGTTGAATT 1514535 29 96.6 32 .........G................... TTGGCGAGATTGTTAACGTTGCGATGTCTCAA 1514596 29 89.7 32 .........G......T.A.......... GCTTCAGATACATATACTTTAAGTGCAGCGCT 1514657 29 72.4 0 ........AG.T...A.AC.A....T... | ========== ====== ====== ====== ============================= ================================= ================== 10 29 95.9 32 GAGTTCCCCACGCCAGCGGGGATAAACCG # Left flank : ACTGGATGAACTACTGGCAACGCTGACCGATGATAAACCACGAGTCATTGCACTGCAGCCAATTAGCCAGAAGGACGATGCCACACGTTTGTGCATTGAAACCTGTATTGCGCGTAACTGGCGTTTATCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCCACTCATTTATATTCTTTGTCGCCTCTGAAAAAACTCCATTTTGCCCATTCTGGACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTGGGTATAGAGTTATTTTAAATATTTACTTTTTAATCAATGGATTAAGTGTTCTTTAACATAATGGATGTGTTGTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : GATAATATCGACGATAGCAACCTAATATTATCAAACGTAAAAATTCCAATTTAAGAGGAAATTTAATGTCTACGTTAATGGAAAAAGAATGCCTCCTGAACGGCGTGAGTCAAAATATTGCATTTTTATCAAAATTATCTGAAATGGTTTACAACTCTCAGAATGAAGAGTTGCAACATGAAATATATGAATTGGTGAGTTATAAAGATTATCTGTACTCAACAGGCCATGAACTTGTTGATTTTCAAGAGGGAGTATTACGATTTCAGAAAATTAGGATAAAATACAGACAAGAGCTAAAAGAACTCGGTTATCCTGTAGGTAATTAATAAATATTGTCTTTATGGTTGGAAAACGTAATTTTTTATATTGTAAATATTAGATTAAAATAATAAGTTAATATCATGCTTTTACTTTTATTCTCGATAATACCTAATTTCATTAAATACGTTCTCCTGTAAATGTAAACCGGGCATTTTTCCGCCCGGCCTTCCCCGATT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCACGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCACGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.00,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1530013-1530773 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP055955.1 Escherichia fergusonii strain RHB18-C08 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1530013 29 100.0 32 ............................. ATTGCCTTCAATATTCCGGTATACATAGGCAC 1530074 29 100.0 32 ............................. TTAATGACAAATAGCCCAGCGTTACGTAAAAA 1530135 29 100.0 32 ............................. TTTATCAGCGTCACCGATCCTACTTGTGCGGA 1530196 29 100.0 32 ............................. GGGATGTACGGAAGTAAGTTAAATGGTTATCG 1530257 29 100.0 32 ............................. ACCGGAGTGATAGACCGTTTGCTCGATGCCGT 1530318 29 100.0 32 ............................. AGTTAAAAAAATCCACTGCATATAATGAGATC 1530379 29 100.0 32 ............................. AGTGAGCCAGCCTGGATTATTGAGGCGCGTAT 1530440 29 100.0 32 ............................. AAACGCCGTGGTGTGCCGCGTTCGCCGGAGCT 1530501 29 96.6 32 .............T............... TTGACGATAAACAGTTTGCTACCTTGCTTGAA 1530562 29 100.0 32 ............................. CCTGACCAGATGAGAGACTTTAACCCGGAACT 1530623 29 100.0 32 ............................. TCGACAATGGATAAGTTGACTTCAGGTCTGGG 1530684 29 89.7 32 .A...........T......A........ TGCAGTACGCCTGATGACAAACCAAGCATCGG 1530745 28 79.3 0 .A..........T.........-.CT..C | C [1530750] ========== ====== ====== ====== ============================= ================================ ================== 13 29 97.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCCGGTGAAATTGAACCACCACAACCTGCGCCGGATATGTTACCGCCAGCTATCCCGGAACCTGAAATGCTGGGTGATAGTGGTCACCGGGGGCGCAGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTTGCAATCTGGCTCCTGGAAGTACGTGCCGGTGTTTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCCCAACTGGCAGGTTGCGGAAATGTGGTCATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGTGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAAATTGTTTAAAAACAGATACGTATGCTTAGT # Right flank : CAGCTCCCATTTTCAACCCCATCAAGACGCCTTTGCCAGTTCCTTCACCAGCGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGCTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCCGGGAAGGCCGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTGGTCGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCTGCATCGTTACAACATCCGGTACCTTTCGGATAGTTTTTATTCAAACCTGGATTTGTTGTCGCTGCAATCCCATGATTACGCGCAATTGCCAGCGCTCGATCACGGGTTAATTTCCTGACAGCTTCTGGTGTATTTACGCCACTATTAAAATAAAGCTTATCGCCCACGATCAAATTATCGAGATTAATCACCAGCAGGGTATTTTTCTTTTCAGTATCGCTCATGCGCT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2292275-2292422 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP055955.1 Escherichia fergusonii strain RHB18-C08 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2292275 28 100.0 32 ............................ AATGGTGAATATGGCAGAAAAGCCCTTTGCGA 2292335 28 100.0 32 ............................ TTCACTGGTAACATACTCCACCCGCCCACCAT 2292395 28 82.1 0 ....................A.A.A.TG | ========== ====== ====== ====== ============================ ================================ ================== 3 28 94.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAGTTCATCGTCGAGTTACAGGTTCAGTTGGATCAGAAAGGGGTTTCCCTGGAAGTGAGTCAGGAAGCGCGTAACTGGCTTGCTGAGAAAGGTTACGACCGGGCGATGGGCGCACGTCCGATGGCACGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCTAACGAACTGCTGTTTGGTTCGCTGGTGGATGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACCTACGGGTTCCAGAGTGCGCAAAAGCACAAACCGGAAGCAGCGCATTAATCTGATTGTCAGGTAGGATGATGAAGTCCGTAATCTCGTCAGGGGTTACGGACTTTTTGTTTATGGGGGGAGGTGGTCCAGACCTTTTTTTTGATGATGATAGTAAGTTGTTGATAATTAATGCTGCGGGAAGGTAAGGATAAAAAAGGGTTGCAGCAGGAAAATGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : GCGAAAAAAAAGCTCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTGGCTGCCAAACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTTAATGATAATTATTGTTTGCTCATACTGTAAACAAGTTGTGCAGTATATCTACATCGAGACAAGTTACGGACTTATACTTGCAAAGTACTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACGCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGCTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTACGCATTTTACCGGAGATG # Questionable array : NO Score: 5.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //