Array 1 518803-513103 **** Predicted by CRISPRDetect 2.4 *** >NC_008278.1 Frankia alni ACN14a, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 518802 28 92.9 33 ..........T.....A........... CCGCCCAAGCTGTGCTGGCCGCCGAACGGGAGA 518741 28 92.9 31 .......T.............A...... CGTCCGCACCCCATGATCATCCTGGCGGGGC 518682 28 92.9 33 ..........T......A.......... GTCACCTACGACGCGCCGCCCACCGCCACCATC 518621 28 100.0 33 ............................ TTCGTCGGCGTGTGGTTCTCGGCGAAATAGAGA 518560 28 100.0 33 ............................ CGGGGCCCGAGCGCCAACTCGGGTGATCCCGCG 518499 28 100.0 33 ............................ CTGTCGGTCGGGGTCCAGGTGCCGGTGGTGGGG 518438 28 100.0 33 ............................ GCAATGGCCATCGGCGCGTCGGGTACCGGCGGA 518377 28 96.4 33 .................A.......... CCCGTCGGGGCCCAGCCGTTCTTGATGAACAGC 518316 28 100.0 33 ............................ CAAGAGGAAGCGCCGCTAAGGAGACTCGACCGA 518255 28 100.0 33 ............................ CATGCGCGAGCGAACGCGTCGGCGCCGCGGGGA 518194 28 100.0 33 ............................ CGTCCCGCTCGGGCCCGGTGAGGTCAATTCCTA 518133 28 100.0 32 ............................ CTCGGCCGGAGGGTGGAGGTTGACCGGGTGAG 518073 28 100.0 33 ............................ CGCCGCGCCAGATGGGAGTGCCGATCCGAGTGC 518012 28 100.0 33 ............................ CGATGGGTCCGGCTCAACGCCCCCCTCCTCGCG 517951 28 100.0 33 ............................ GAGCAGGTCGGCTTTCATCACCTCACGCTCGGC 517890 28 100.0 33 ............................ GCTATGCGCGAAAACGACATGATCGCTAACTCA 517829 28 96.4 33 .......................G.... TCGTCACCCGCTACGCCGAGTCCGGGACGGCGC 517768 28 100.0 33 ............................ GAGTCCGCCGGCGTCCGCGTCTACAACTCGGGG 517707 28 100.0 33 ............................ CTGGAACGGGTCGGCGGCGACGCCGTGGACCCA 517646 28 100.0 33 ............................ ATGGACGTCTCGGACACCGAGGGCTACCCGGGG 517585 28 100.0 34 ............................ CCGTTCACCGCCCTGGCCGATCAAATGCCGCGGG 517523 28 100.0 33 ............................ CGCAGCGCCCGACCGCCGCCCTTTGCCGGCAGA 517462 28 100.0 33 ............................ GCCGTCGGTGTGGCGGGGGTCGCGGCCTTCTTC 517401 28 100.0 33 ............................ CGTTGCGGGACGTGTCCGCCCGTCCGTCCGACC 517340 28 96.4 33 A........................... GTCCCTGTCGGTCTCCTGGGTCACGCACAGCGG 517279 28 100.0 33 ............................ GTCGGGAGCATCCCGGAGCCGCAGCGGTCCCGG 517218 28 100.0 33 ............................ GCCAGCTCGCCGATTCGGGCGGCGGACAGCGGC 517157 28 100.0 33 ............................ CTGGCGAGGGGACGCGCGCTACGACGTCGACCC 517096 28 100.0 33 ............................ CCGGCGGAGGTGCTCGAGCTGGCTGATGTCCGC 517035 28 100.0 33 ............................ CCGCGATCCCGCTGGGACACCGGGACCTGCGAA 516974 28 100.0 33 ............................ CACCAGTGCGCGCAGACGGTCGACCTCGGTGAC 516913 28 100.0 33 ............................ CACAGCGCGACCCCCTCTCTACTGGAGTTGGAG 516852 28 100.0 33 ............................ ACGTCGACGAGGCCACCGACAGCGGCCTGTAGG 516791 28 100.0 33 ............................ CGGGATCTCCCGCAGGTACGCCGTGTAAGCGGC 516730 28 100.0 33 ............................ TGACCGGCGCGTTCCTGTGCCTACAGGCCGCGG 516669 28 100.0 33 ............................ CGGCGCTCATCTCCCCAGCTCATGTCGTCTGCC 516608 28 100.0 33 ............................ AAGTAGGTGCCGTTCATCTCCCAGGCGATCGAA 516547 28 100.0 33 ............................ GAGAAGTAGCTGCCGGCGCCGATCGTCAGAGGG 516486 28 100.0 33 ............................ CGCCGTCGCGGATGTCGGAGGCGGGGATGCGGA 516425 28 100.0 33 ............................ GTGCCCGAACAGATCCCATGCCACAGGCCCGAA 516364 28 100.0 33 ............................ CCGCGGCCCCGAATATTCACGCTGTTTCAAATC 516303 28 100.0 33 ............................ CAGCCCGGACAGGTGTAGAAGCCGGTAGGCGGC 516242 28 100.0 33 ............................ AGCCGGGCACAGGGGGTCCTTCCGAGCTGGAGG 516181 28 100.0 33 ............................ CCAGTTCGGGCCGTAGCGGCCAACGAGCCAGCG 516120 28 100.0 33 ............................ AGCCGGGCACAGGGGGTCCTTCCGAGCTGGAGG 516059 28 100.0 33 ............................ CCAGTTCGGGCCGTAGCGGCCAACGAGCCAGCG 515998 28 100.0 33 ............................ AGCCGGGCACAGGGGGTCCTTCCGAGCTGGAGG 515937 28 100.0 33 ............................ CCAGTTCGGGCCGTAGCGGCCAACGAGCCAGCG 515876 28 100.0 33 ............................ GACTTCGATGGCGCTCATCGGCTGGTCTCCTGG 515815 28 100.0 33 ............................ ACCGTCGTCGCCGTCGGTGAGGAGGCTGTCCAG 515754 28 100.0 33 ............................ GCCGCGACGTGGGTGAGCGCCTCGACCGCCGCC 515693 28 100.0 33 ............................ GAGCCGACGACCTGCCCGGCCGCCCACACCAAG 515632 28 100.0 33 ............................ GCCACCGACCATTCCAAGACGCATCCGAGCAGG 515571 28 100.0 33 ............................ TTGCATGATCGGCACATCGGCGCATCTTCGTCA 515510 28 100.0 33 ............................ GAAACTCGAACCGGTCTTGATCCGGAGGCCGTG 515449 28 100.0 33 ............................ CCGGGCTCGATCGAGGCGACCGCGCCGACCGCG 515388 28 100.0 33 ............................ CCGTGCTCGCCGGCGCGACCGGGGCCGGCCAGC 515327 28 100.0 33 ............................ AGGACCACCATGATCAATGATAGACCGAATCAG 515266 28 100.0 33 ............................ CAGCTCGAGGCCGTCAGGACGGCCCAAGGTCGG 515205 28 100.0 33 ............................ AGGGCGAACCAGCCGCGGAGACCGGGCCGCGCC 515144 28 100.0 33 ............................ CCCGTACGCCGCCGCCGGTGCGCAACTCAGGCA 515083 28 100.0 33 ............................ CCGGAAATCGTTGGCTGGGCCGCCGCCGCGCGA 515022 28 100.0 33 ............................ TGCCGCCGCCGGGTTTTTTTTCGGGCAGCTTGA 514961 28 100.0 33 ............................ CGGATCGCCGGGTCGGCGGCGATGGGCATGAGG 514900 28 100.0 33 ............................ TGGCACCGCGTCCGGGGCCGCACCCAACGCCGG 514839 28 100.0 33 ............................ AGGACGGCGCCGATCGCGTCGCTGATGGTGCGG 514778 28 100.0 33 ............................ GGTCCAGAGTCACCACAATGGGCGCAGCGATCA 514717 28 100.0 33 ............................ TCGTCGCCGAGGGTCACTCCCACGTACTCGCCC 514656 28 100.0 33 ............................ CGGATGGTGACCTCGGCGCGAGCGTGCATCTCC 514595 28 100.0 33 ............................ GCGCCGTTTATGATCTACCGGGACAGTGCCTAC 514534 28 100.0 33 ............................ GTCGCCACCCACGGCCTGGTGCTCCGCGACTAC 514473 28 100.0 33 ............................ GTGGCGCGCGGCTGGAATGACAGTGTCGGCCGG 514412 28 100.0 33 ............................ ATCGGCAAGGTGTACCCGCTCGGCCGGGACGGG 514351 28 100.0 33 ............................ CTGGTTGACCCGTTCACGCAGACGAGGGTGCCG 514290 28 100.0 33 ............................ GTGCAGGCCGGTGACAACTCGCCGTGGGGCTGG 514229 28 100.0 33 ............................ AGGGCGAACCAAGCGCGGAGACCGGGCCGCGCC 514168 28 100.0 33 ............................ GAAAGGAGCGTGGCACGGTACCTCGACGCTGGA 514107 28 100.0 33 ............................ CCCCCGCACCACGTCGCGCTCGACCTGCGCCCC 514046 28 100.0 33 ............................ CCCACCCCCGGCGCCGGCGCCCTGATCGGCGCG 513985 28 100.0 33 ............................ CGCTCGGCGGCCTCCGAGGCGACGCAGGGAAGC 513924 28 100.0 33 ............................ CAGGCGGCGCTGCTGGCCGCGCTGCTCGGCGCC 513863 28 100.0 34 ............................ CCACGAGGTCTGGCCGTGCCGCGCGGCTCCGTGC 513801 28 100.0 33 ............................ CGGTACGCCGGCGTGGTCTCCGCCGGTGGAGAG 513740 28 100.0 33 ............................ TTCTTCTCGGACATGTGGCGTGACGTGTCCGGG 513679 28 100.0 33 ............................ GGTGTGTCCGCCGCGTCGAAACTCGCCGCCGAG 513618 28 100.0 33 ............................ AAGCAGAAGCGCTCGGCTACAACACTGACGGTC 513557 28 100.0 33 ............................ CCACTGCCTTGCCCGTTCGGCGGCGGCGTCCCG 513496 28 100.0 33 ............................ AGAGGTGGCGGCGCCGTGGCTGACCCGAACGAG 513435 28 100.0 33 ............................ GTCGACCCGCGGGGTGAGATCGGGTCAGCCGGG 513374 28 100.0 33 ............................ GGACGGAATCGTCGTCAGCGTCCCGTCGGGGAG 513313 28 100.0 33 ............................ GGGCCCAGTAGCCGACATCGCCCGCTTCGACGG 513252 28 100.0 33 ............................ GAAGTCGACGCCGGCGCCGACAGGACGACCTGC 513191 28 100.0 33 ............................ CACCTCGCAGGTGCCGCAGATGATCGCCCCCCG 513130 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 94 28 99.7 33 GGAAGATCCCCGCGCGGGCGGGGACGAC # Left flank : ACCCGGTCGGCCAGCGCCGCGTCCTTCATCTGAAATGCCGGAGTCGCCTTACCCACATCATGCAGTCCACACAGAAGAGCGAACAGCGACCGCCCTCGACCCCGGCTACAGTCATCAAGAAAACGCTGTACGGCGGGCGAAAGAAAGTTATCCCAGACAAGCTCCGCAACAGCCGCGGTATCAAGCAGATGCCCGAGCAATAGGTGCATCGACTCCGGCGCCTTCGACTTCCCCCACACCACTGCCAACGCGTCATCCATGGACCACATCCCCCGAGCAGGACCATCGAACACACCATCCAACCATGCGCTTCGCAGCCCACCATCAGCACCCCGCGACCAACCAGGTGCCATGCCTACCCGAGGCCAACCCGCACTTCTGGGTGCCGACCGACCCCACACCAGAACCGCGGTCATCCCTGACGCGGCTCGCCTGCACCAAGGCCCGCACCGACGGTCGGGCCATCCCCCGCTCACCCACCACGGCCGACCGAGCCCGCC # Right flank : ACTTGCTGACCTGCACTTTCTCACCGGTCTGCCACCCAAATTTATCAGTGCAGGCGGGACGCGCAGGCATCTTGGTAGGCAGCCAGTAATGATCAACCATCGGTCACGGCCTCTCGCCTGCCGGTTGCGGCACGCGAGCACAAGGTATGCGTCGGACAGGGCGTTTGGTCGCGGCCATCCACCAACGCGACTCCCGCGCGGACGCGGCGCGGCCGATCTCGACGGGCTTGGTCGGCCACGGAATGCCGCACGATGGCCCATGTAGGGGACCATCAGCCACATCGGTGGACCGCACGGCCTGGGCGCAATACCGCTGGGCCAGCCCGGCCTGTCCATCGTCGGGGCCCAGCCAGCCGACGAGGGTTGGGTGGCGTTGAAGTCGCGGCGCACGTGGCCGGTGGGCGTCCGGCCGGGGATCGTCGTGCTGCGGGAGATCCTGAGCTGCAGGCGCCTCGGCGTCCCCGGCGACCGCCCGAAACGGGCTGCGGCCCGGCCCCCCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAAGATCCCCGCGCGGGCGGGGACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,0.74 Confidence: LOW] # Array family : NA // Array 2 528731-530476 **** Predicted by CRISPRDetect 2.4 *** >NC_008278.1 Frankia alni ACN14a, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================================================================================================================================================== ================== 528731 29 65.5 163 CG.....GA.A.....T.T...C.C...T GGCCCAACGCATCGGCGAGGGCCAAGCCGTCATGATCGAACCGGCCGACAACGAACAGGGTTGGGCCGTCCGCACCGCCGGCCGCGACCGCGGCTACCCCATCGACTACGACGGACTAATCCTTTTCGCCCGCCCTCACCGATAAACCCCCAGATCAGCAAGG 528923 29 100.0 32 ............................. GTGCCTCCGTGAGGTAGACGTGGATGGTGAGC 528984 29 96.6 32 ............................A CCATCCCACGCACCCTTGATCCAGCCGGTGGC 529045 29 96.6 32 ............................G CGCATCCCGGCGGCGCGCAGCCGGTCCAGGTA 529106 29 100.0 32 ............................. CACAGGTCGTCGACCCCGCGGTCCTGGAGCTC 529167 29 96.6 32 ............................G CTAACGACGTGCACGATCTCCGCCGCGGTGAG 529228 29 96.6 32 ............................G CCCATCGCCAGCTTGATTTCCGTGTCGGGGTG 529289 29 100.0 32 ............................. CTGGCCGCGGCGCTGGCCGAGCTGGGGGAGCG 529350 29 100.0 32 ............................. GTCTCGTAGGCGATCTTCACGTCGCCGTTGTG 529411 29 100.0 32 ............................. CCGCCGACCAGGCGCGACGCGTGAGGCGACCA 529472 29 96.6 32 ............................G CCCTCCAAACCGGCGCCATGCTCGTCTCGGCG 529533 29 96.6 32 ............................G ACGGTCACTTCACCCGGCACCGGCGGCGGCCA 529594 29 100.0 32 ............................. TCGACCAACATGCCCATGGCGCGGCCCATCCG 529655 29 96.6 32 ............................G ATTTTGAACGCCGAGACGAAGCTGACGGAGGC 529716 29 96.6 32 ............................T GAACGCGCGAGTCCGCGGTGGGGTGTTCGTTG 529777 29 96.6 32 ............................T CACGGCCGGAAGCGGGAGATCGCGGTAGAACC 529838 29 96.6 32 ............................T GCGACTGAGATATCGGAGGATGTTCAGTGACT 529899 29 96.6 32 ............................G TGCTGCTCAATACGACGGGGGCCGCCGAAATA 529960 29 100.0 32 ............................. TCCTTAGCCGATGTGATCGAAAATTTTGCCCG 530021 29 100.0 32 ............................. GACGTCCGACGACGAGCCCGCCCTGAGGGACT 530082 29 96.6 32 ............................G GCCCACGCGGGCAGGAGTCCGCTGGGGCGCCC 530143 29 96.6 32 ............................T CCGCCGGCTCACCCGGATTGTTCACACCACGC 530204 29 96.6 32 ............................G CCGCAGGTCAGGCCGAGGACGGATTTTCCGGC 530265 29 100.0 32 ............................. GCCAACTCGCCGGAGTGCGGGTGCACGCCGGG 530326 29 100.0 32 ............................. GTGTGTTCGATACGGTGGTGGGGTGCTGGTGG 530387 29 100.0 32 ............................. CTGCCGACCGGTCACGAACCCGTCGTCCCCGA 530448 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= =================================================================================================================================================================== ================== 27 29 96.8 37 GTCGTCCCCGCCCGCGCGGGGATCGTCCC # Left flank : ATCGGCGCCAGCCCGGCACTCGGTTTCGTTCACACCGGGTCCGCGATCTCCTTTGTTCTGGACATCGCGGACCTCTACAAGGCGGAATACACCATTCCGCTCGCCTTCGATCTGGCCGCGGCCGGAACCGTCGAGGAACGCGACATCCGCACCGCCTTCCGCGACAAGGTCGCCGACGGTCATCTCATGGGACGGATCGTCCGCGACCTCAAGGACCTGCTTCTCGACGGCGAACAGGCCGAGACCGGTGATCAGGACGCCCTGCACCTGTGGGACGAACTCGACGGCCAGGTCCCCGGAGGCGTCAACTGGGCCGCCGACTACGCCAACGGATGGGACGACGCCATCAGCCTCGGCATCGTCGGACCCGACGTCGACGGCCAGACCGACCCCTGATGACCGTCGTCGTGCTTATTGCGGCCTCCGAAGGGCTCCGCGGCCATCTCACCCGCTGGATGATCGAGATCGCCGCCGGGGTGTTCGTCGGCAACCCCAGCGCC # Right flank : GGACTCTGGGGTGCGATCCAGGAGCTGTCGGCGACTCCTGAAAACTGGATCTGGATCTGTCCCTGATCTTGTGATCGAAGTGGACCCGGGCGCTGTCAGGTCGCGAGGAGCACTCGTTTGCGGAGCAGGTCGAAGTTCGCCCTGCCGTACATCTGCCGTTCGATCATTTTGATGCGGTTCACGGCTCCCTCGACCTGTCCGGAGCTGTGCGGCAGGGTCAGCCCGTTGAGGACCGCGTCGTGGTCACGCAGGAGGCCGCGGGTGAAGCGGTGCAGTTCGGGCAGGTCGTCGGCGTCGACGGCGGCGATCCAGTCGTTGAGCCGGTCGCCGTGACGACCGGTGAGCATCTGCGCGAACGCGGTGACATGACCGGCGGTTTTCTGGAGGTCCTGGCAGCGGGTGAGGATCGTCTTCAGCGCCAGGGTCTCCTGCTCATTGAGGTGCTCGGGGTGGGTGAGGATCCACCGGGTGACGGTGCGGACCTTCGGTGCCGGTCGTGC # Questionable array : NO Score: 5.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.45, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCCCGCGCGGGGATCGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.42 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 3 1725539-1726958 **** Predicted by CRISPRDetect 2.4 *** >NC_008278.1 Frankia alni ACN14a, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 1725539 30 100.0 40 .............................. TGCAGACGCCCTTGCGTGGGCAACAGCACACATCCTGACA 1725609 30 100.0 38 .............................. AGGGCCGTTTCGATGTGACTGTTGGTGGCGCTGTGCAG 1725677 30 100.0 36 .............................. TTCGGCTACCTGCACGGCGCGCCTCCGCCGGCCCAC 1725743 30 100.0 39 .............................. TTGGGTAGCTGGTTGATACCCGGGATGATGGCATCCCCG 1725812 30 100.0 35 .............................. GGCATCTCCGTGTGGACGTAGTGCGGCCGTACGAG 1725877 30 100.0 39 .............................. AAGGGACGCCCGAGGCGCCTCGACGCGTTCGCCTGGGGG 1725946 30 100.0 38 .............................. TACAGACCACGTTCAGGGCCGAGCGTGATGAGTGCGCG 1726014 30 96.7 36 .......................C...... AGACGCAGATGTGGGAGCTCCCGGAAGTCGTCCGCG 1726080 30 100.0 34 .............................. ATGACACGCGTACGCTCCACCACCGGTTCACCAG 1726144 30 100.0 33 .............................. ATCGGCCCGTAGCGGGCGATGCTTTCCTCATTG 1726207 30 100.0 40 .............................. TCAACGCCGAGCAGGCCCACGGCGACGACGGGTCGGGTCG 1726277 30 100.0 34 .............................. TGTCGACGACGAAGCCGCCGCCGGTCCAGCGCAG 1726341 30 100.0 37 .............................. CGGTGAGCTCACCGACGACCAGATCGCCGAACTCGAC 1726408 30 100.0 34 .............................. CTGCTCACCGCGACGGCAAACAGCGGCGCCACGT 1726472 30 100.0 39 .............................. TCTTTCCCGAGCCGGTGCCCGCGACAACCGCGAAATGCG 1726541 30 100.0 38 .............................. CAGAGCTGATCATGCAGGAGACGCTGCCCGACGTACCC 1726609 30 100.0 35 .............................. TCGGGCGTCAGGAGGTCGGCGGAGCGGCCTTGCGC 1726674 30 100.0 32 .............................. GCTATTTCCGCCTATTCTTGACCTACCGGCGG 1726736 30 100.0 35 .............................. ATCGCGAGCATGTTGACCAGCCCGACGTCGAGCAG 1726801 30 96.7 33 ....................C......... GCCGGCGAACGGCGCCGGGCCCGACCCGCGCGA 1726864 30 100.0 35 .............................. AAATCGTCACGCGGCGGAGACGACACCGCGCCGGG 1726929 30 90.0 0 ............T..A.............T | ========== ====== ====== ====== ============================== ======================================== ================== 22 30 99.2 36 GTCGCTGATCATCCCTGGAGGGATCGCAAC # Left flank : GCGCTGCACCACTCGGTGGTCCTCAAGTCCTTCGGCAACGGCGAGATCGAAATCCGCCGGGTCCTCCCTCCCGGCTGCCGCATCGACATCCCACCCGCCCGCTGCGGCCCCGACGCGTCCGAGCGGACGATTCCGTCCGCCGGGGCGGGTAACCATGGTTCTGACTACGGATACGTTCCCGCCGCCAGCGGTCAAGGCCCGGCTGCCCGAGTTGGTGACCTGAATTCAACAACACCACGACCAGGTGACGGCGATGCGCAACGAGCGGCCAGCGGCAGCGGTCGTTCCGGTGGAGGAGCGGGAGAGCCTGCACGAGAATCCGGAGATTCCGCCAGACACCAGGACGGTGTCCTCTCTCCCGGCGGCGGCTGAGGCGATTCCCCGGAACCCCTTCCTGGATCATGCCTCTGACCTGCGCAGTTGCATTACCGCCGAACCGCTGCAAGATCTCCGTTTGCCCCCTGGTCCGCAACACCCTTGACCTGCACCTTTACTATGGG # Right flank : TCTCGCTGGCCGGGCTGGAGGAATCTCACTTTCAGGTAAGCGCGAGCAGTGCTCCGAGGGCAAAACCGACCGCCCCGAGCCAGACGAGGGTCGGTAGCGCGTGCAGCCAGCGCGCGAGTGGTCGCGGTCCGGACCTCCCAGCAGCCCCGGCCGGCGGTCCAGGCTGGGCAGGCACCGAGTGTTGGGGCGTGAGTGCCTGGCCGGGCGGCGCGGGGGGACGGCCTGCTGCCGGCGCCCCCGGCGGCGGGGCTGCGGGGCGGGGGAGGATCGCGGATGGCGGTGGGGGGGTGGCCTGGCCGGCGAGGATCGTTTCCTGGTCGGCGAGGTCTGGGTCGGCGGGTGGGACGGGCGGCCGGGGTGCCGGGGGTGGGGGGATCAGGACGACGAGCGGGCCGTTGGCGGCGCCGAGGTGTACTCGAATCTCGCCGCCGACGAGGGGGACGCTGACCCTGCGGCTGCCGTCGACCCAGATGCCGTTGGAGCTGATATCGCGGGCGAGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTGATCATCCCTGGAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.60,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 4 1741773-1741932 **** Predicted by CRISPRDetect 2.4 *** >NC_008278.1 Frankia alni ACN14a, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ============================= ================== 1741773 34 97.1 29 ...............................G.. ATCAGGTCTATGAGCTGTCCACGGAGGTC 1741836 34 100.0 29 .................................. ACCGTCGGCCCGCTCACAGCGCACCATCC 1741899 34 97.1 0 .............T.................... | ========== ====== ====== ====== ================================== ============================= ================== 3 34 98.1 30 GGTTCGTGATCATCCCTGGAGGGATCGCAACCCG # Left flank : ACTCGGCGAGCGGATCGGGGTCGATCCGCTCGACGACGCCGCGGATCTCCAGGTACCGGTAGGGCGCCTCCGGATCGTTGACGGACACCGCCACCTGCGGCGTCGCCGTGACGTTGCGGTACTTCTGCCGTGTCGTGGTGTTCGTGAACCACAGGAACGTGCCGTCCCAGAGCATCCACATCGGGTTCACCTGGGGGGTACCGTCCGGCCGGATCGTCGCGAGGTGCCCGAACAGCGGCCGCTCCAGCAGATCACGATGACTCTCGGGAATGACTGTCATATCCCGACGATATATCAGTACCTTGATGGTGGGCCCTGCCGACCCGGCGGCCTGGACCGCACGGGGAAGTGAGACCGAACGCGCGAGGTCGGGGAAAGCGCCTCCTTGCACCCTCGAGGATCAATGCCCTGACCTGGGCAGTTGCATCACTGCCGGACCGCTGCAACGATCATGTCGCACGCCCCGCAGGTATCCTCTCCGACCTGCGGCTTTACCATGG # Right flank : GCCTGTCGTGTCTGCGGGCGTCGGCAGGTCAGGCCGCGTAGTGGTCGTGGGGGCGGGGGCATCGCGAGGTCGGGCTCGCTTTCGATGGCGCAGCGCGGTTCCGCGGAACACCTTGATCGCCGGGCGAGCCGGTTCGGGCTGAGCTGGAGGGGGTGCGATGCGCCGAGGCGGGGGGCGATCGGCTGGAACTGTCAGAGGGTGGGGAAGCGCTCGATCCAGCGGCGTTGCCAGGGGGTCTCGACAGCCCGCGGGTGATGGTGCGCCCGGGTCCAGGTGACGGCGTCCGCGGGGGAGAGGCCGGCCAGCACGGCGAGGCAGGCGAGCACGGTTCCGGTGCGGCCGACGCCGCCGCCGCAGGCGAGCTCGATGCGGTCGGACGTCTGCGTGTGCGCGTGCAGCGCGCGGATGCGGGCGGCGGCCGTCGCGGGATTGCGCGGGAGGAGAAAGTCCGGCCAGTCGATCCACTCGTGCGGCCAGGTCAGCTGACCGTCATGCCGCCG # Questionable array : NO Score: 2.57 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCGTGATCATCCCTGGAGGGATCGCAACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [38.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 5 6027600-6027439 **** Predicted by CRISPRDetect 2.4 *** >NC_008278.1 Frankia alni ACN14a, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 6027599 28 100.0 38 ............................ ACAGGAGCTGGCGGCCGATCTGGCCGGTGGGTGTGGTG 6027533 28 100.0 39 ............................ ACGCGTGACCCTGGATCAGGTAGCGGTCGAAGCCGTCGC 6027466 28 96.4 0 ....................A....... | ========== ====== ====== ====== ============================ ======================================= ================== 3 28 98.8 39 GTCGCTGATCATCCCTGGAGGGATCGCA # Left flank : ACCCTCTGTCTGTGGGGGTCACCGCGGCGATGCAAGGTGCCGGGATTCACCACCCGGGCTACCCGCCAACGATCCGGTTGTCACTCCGAAACGCAGTCTGACGTCTAGCCTGACCAGCGCGTATCTCGATCTCTTTGCTGGAGAGAAGAGATTGACAGGCCGGCTTCCCGCCCTCGGCTCGACCGCGTCCCATGGACCGCGCACGGCTCCGAGGTGTGCGCCGGCTGCTCTACCAGCAGAGCGCTGGCGAGCCCTTGGACGCCAGAGCGAGTCCGGGCTGCTGTACTTCTCGATGCAGACTCGCGCTCGCCGTGGGGTGCTCGACGCCCAACGGATCAGCCCGAGGCAGCGGAACTCCCAATTCAGCCCCGAGAGTCTCCCCAGTAACTTGATCCGGGATCATGCCCCTGACCTGCACAGTTGCATCACCGCCGGACCACTGCAAGATCACTCTTTCACTCCCGCCATACGCCGTCCCTAACCTGCACCTTTACTATGGG # Right flank : CGCCAGCCGCCTGGGCATCGGCGAGCCGGACGTGCGGACCGGCTGGGCCCACGGCCGTGCGCTGCAACTCGGCCTGCACCAGGAGGTCGGGCTGACCACTCCCGAGCACCATACTTTCTTTGCATCACCGGCTACCTGGCCCCGCCGACCACGCAGTCATGCCGGGTGCTGCGTCCCTGGCTGGACGAGGAGACCTGCCACTCGAGCGTGTTCCCCGGACACGTGTCGAAGCGGTGCCGAGCCGGCATCGGACCGCATCAGACCGGCCTCGGGCAAGGTCGTCAGGCGGGATCGACCGGCGGGGTGTCCGGGTGCGGGCGCCCCCCTCGACGTCGAGTCCGGTTCCACTCCTCGATCGTCGAGCGTCGCCAGCGCGGCCTGCGACGATTCGCCGGTCGATCGGTGTCGGGGTCGTCGGCGGCTGGGGCGTCGCCGCTCGCCACATTGGCCCGCCAGGATGACGGAGTGATCCTGAGGTGATCAGCCACCTGGAGGACGGT # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTGATCATCCCTGGAGGGATCGCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.50,-4.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 6 6037251-6036633 **** Predicted by CRISPRDetect 2.4 *** >NC_008278.1 Frankia alni ACN14a, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 6037250 30 100.0 34 .............................. CCGCGGGGGTCCCGGCCGGGGTCGGCCCAGACGC 6037186 30 100.0 34 .............................. CTCATGCTCGCGCAGGGCGCCCGCGTGATGCTCT 6037122 30 96.7 40 ...................G.......... TGGCCGATCTGCCGCAGAACACGCGCCAGGACCTGCTCGC 6037052 30 96.7 34 ...........................T.. TCGACGCGTACGACTGGTTCGAGTGCGAGCTGCC 6036988 30 100.0 35 .............................. GGCAGACGGCCCCCCCACCGGCCGCCCGTGACGAT 6036923 30 100.0 37 .............................. ATGGAGCTGGCGGCGAGGTCCTGCCGGCGGCCGGTCA 6036856 30 100.0 35 .............................. GTGATCAGCACCGCGCTGTTCGTCGACACGGTCAC 6036791 30 96.7 34 .....A........................ ACGCGGGCTGCCTCGCCCTGGGTGGCGCCGCGGC 6036727 30 93.3 35 ...................G....C..... TGCCTACTTCGCCTCCGAGACGGAGGCGGAAATTC 6036662 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 10 30 98.3 35 GTTGCGATCCCTCCAGGGATGATCAGCGAC # Left flank : GCCGCCCCGGTGGGTCCGATGGGCGAGGCCGGCCCGGCCGCGGCGCTCTCCGTGACAGCACCGTCCGCCCCGGCCGCGCGCCGCGCCGCCCCCATCCTCGCCGCAACAGCCGCCGCCCTCACCGCCCACCTCACCCCACCCGATTTGATCACCGAGCCGCGCTTCAGCGGGTCCCGACGATCGCCCTGACCCTGTCGTTCGACTCGATCCATGAGTGTTCGTCGACGGCCGGGTCACCGTCGAAACGGGCCGCGGTTCCGCGGAACCGCGGGATCGCTGGACCTTGGGTGAAGGCACTTGGCTTTGGAGGCAGTCCGTGGCGTGCAGCTCCGCCGAACACCATGATCGCCGGGGTGGGGTCGCACTGCGGTACGCAATGCACAGTCTGCGGGCCCAGACCGCACAGATGCACCGAAATCGGCCGCGGTCGGCGCTGCCGAACACCAAGGTCGTCGAGATGGTGGTCGGAGCTTGGCCTCCGATGGCCGTCCGGCGGCCGC # Right flank : CCCATGGTAAAGGTGCAGGTCAGGGGTGCGGTGGGGTGGGGGTGAGGGGGTGATCTTGCAGCGGTCCGGCGGTGATGTAACTGTGCTGGTCAGAGCCTTGATCGTCTTGGCTAGAGGACGGAGTCCTGGTTGCCCAGGGGGACGCCTAGCCATTCGGTTTCGACGAGGGCGGGGGAGCGGGTGCGGTAGACGCGGATGCTGTCGTAGGTGAGGTCGAGCTGGTCGCGCAGCGTGGTCATCAGGGCGCGGTACTGGGCGGCGGACAGCTCTCCCTCGAAGACGCTGCGTTGGACCCAGTGCAGGTACTTGCGGCAGGTGCGCAGGGCGTTCGGATTGCGCTCGGCTGCGGTGTCGTAGACGAGGACGACGAACATCCCGCTACCACCAGGGCCGAAACGGCGTGTACGGAGTGTCCTCCAGGCAGAGCCGCACCAGCTTGAGCGCCTCCAGATGGATCAGTTCCTCGTAGGACACCTTTCGCTTCAGCGTGCGGTGGAACA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGATCCCTCCAGGGATGATCAGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.60,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 7 6604726-6604433 **** Predicted by CRISPRDetect 2.4 *** >NC_008278.1 Frankia alni ACN14a, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 6604725 30 100.0 33 .............................. TCGGGGATGCCCCACGGGGACCGCGGGGGAGGC 6604662 30 96.7 35 ........................A..... AGCCAGGGGTAGCCGGCGGGGATGCCGCGGATGAG 6604597 30 96.7 38 ........................A..... CCCTGCATGTCCCGGATGGCCGGCGTCAGCCAACTCAT 6604529 30 96.7 37 ..............T............... AGCTCCTGGACGGCCATCCCGGCGACGCCGAGGGCGC 6604462 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 5 30 98.0 36 GTCGCTGATCATCCCTAGAGGGATCGCAAC # Left flank : TGGCGACGACACGCCCGCGACCCCGTCGCTGACGAAGTCTGCCCTGCCGAAGGACGTCTCCCGCGAGCCCGGCCGCCCCGTCGACGCCCCCGCGCCGTCGGCCCCGGCAACGCCCGCGCTGCTGTCGAAGTCGTCGCCCTCCAAGGCGACTGCCTCCCGCGCCGTCCCGCCCCAGCCCACCGTCCAGCCGGACGCCGCCCCCTTCGATCCCGACGCCACCTGAGCCCTCTCTCCCCGCGGCCGACCAGGCCCCTGGGCGTTGCCCCGGGCTGGCGGTCACCGCAGCCGGACGCGTGGTGCAAGAGACAGCTTCTGCCCTGTCGTCGGCGCGGCCGGCGAAACCTGCTGCGCCACGCGCCCTCCGATGGCGGGCGTCAGCCCATCGCCGCCCCGGATGGATCAAAGCCCTGACCTGCGAAGTTGCACCACCGCCGAACCGCTGCAAGATCCCCAGAAACCGCCCCCTCAACCGCCGCCCTGACCTGCACCTTTACTATGGG # Right flank : ATGGCTGCGGCAACAGCGGGCCAGGCCTCGGCGGGGTCGCTGATCATCTCTAGGTCGCGTGTGTGGTTGTGATCAGGAGGCGTGGTGGTGCCACCTGACCCCCGACCATCGAGGCATGGTCGTGGGGGAACGTGCGGTGGGCGTCGGGGTTGTCCTGACGTCGGGCTGGCCTCCGACGGCGCCGACGCGGTTCCGCGGAACCGACCGGACCGTGCCAAGCCTTCGCGGTGACAGGTCATGCCGCGGGGCACAGTTCCGCGGGCGCGACGATCATCCAGGTTGCATGACGGGAGGCGGCGCATTGCGGTACGGAATGTGCGTTCTGCGGGCCCAGACCGTACACGGCGCACCGCAACGCGGCCGCGGTGGGGCCCACCCTTGATCATCTGGGCCGCGTCGACGGACTACGTCGGGAGTCGTGGACTGGGGCTCGATCCTTCCAGGCAGGAGCTAGGCGGCAGCAGGACGCCCGCGGGCGGCCGGGGCCGGTGGTGTCACCG # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTGATCATCCCTAGAGGGATCGCAAC # Alternate repeat : GTCGCTGATCATCCCTAGAGGGATAGCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //