Array 1 1139219-1140408 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP055412.1 Klebsiella grimontii strain RHBSTW-00054 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1139219 29 100.0 32 ............................. CTGCCACCCATTCGTTAACCAGCCAGACACCC 1139280 29 100.0 32 ............................. ACAACGCACCGCGGCAGAACAGCGAAAAGTTA 1139341 29 100.0 32 ............................. ACCACGAATGAAAATGTGGCCAGGAAAGCCGA 1139402 29 100.0 33 ............................. GTTGGCCAGGCATACGCAGCAAATGCCATTGCG 1139464 29 100.0 32 ............................. ACTTGTTCAGAAAAAAAACCATTAGGAGGTTA 1139525 29 100.0 32 ............................. GGTGCTTGCCTGGGTAAAACTGAACAGGCTTA 1139586 29 100.0 32 ............................. ACCATTCTCATCATTCACGGCACGCAGTTAGT 1139647 29 100.0 32 ............................. CCGTTGATTTTTTCCGACGCTGGCTCAGTCTC 1139708 29 100.0 32 ............................. CGCTTCCGTTTCCTGAGCATATAGGTCGCCAT 1139769 29 100.0 32 ............................. CGACCGCCAGCGGCGTTGTTAAACACGCCTGG 1139830 29 100.0 32 ............................. GTGATTCCAGCGTTAACCCGCAACAGTTCATG 1139891 29 100.0 32 ............................. CCTATAACCGACGAAGGCAAGCGCCGCGCACG 1139952 29 100.0 32 ............................. CCAGTTAGCCGCACTCTTTAATTGATCTGCGC 1140013 29 100.0 32 ............................. TAGCCCCTTCGAGTGACGGGTATTCCTGACCG 1140074 29 100.0 32 ............................. CGTTGGATCGACGATGACTCCCCGTTAAAAAT 1140135 29 100.0 32 ............................. TGAAAGAATTAACGCCGGGAGAAATGACGGCA 1140196 29 100.0 32 ............................. GGTACTGCCCTGCACTGTCTGCTGCTGGAGCC 1140257 29 100.0 32 ............................. ACAACGCAGCCAACTGAGATTCAGAAGGCAGC 1140318 29 96.6 33 ............................A GCTCCCGCTGGACGCTTCGACATGTCTGCGAAT 1140380 29 82.8 0 .....G......TC.......G.T..... | ========== ====== ====== ====== ============================= ================================= ================== 20 29 99.0 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTAGCTGCTGGTGAGATTGAGCCGCCTAAGCCAGCGCCAGATATGTTGCCGCCGGCGATACCAGAGCCACAGCGACTCGGCGACGGCGGGCATCGGGGGCATGGCTGATGAGTATGGTAGTTGTTGTTACGGAAAACGTGCCGCCGCGCCTGCGAGGACGGCTTGCCATATGGTTGTTAGAGATTAGGGCTGGCGTCTACGTCGGCGATGTTTCAAAACGTGTGCGGGAGATGATTTGGCAACAGATTACGCAATTAGGCGGCGCTGGAAATGTTGTTATGGCCTGGGCGACGAATACAGAGTCCGGTTTTGAGTTTCAAACTTGGGGAGAAAATCGACGTAGTCCGGTAGATTTGGACGGCCTGAGATTGGTTTCTTTCCTTCCCATTGAAAATCAGTAAGTTATAAGTTCTTTAATAAAAAGGAATTGTAGAACATAAGTTGGTAAATTGTTGCTCTCTGAAAATTGTAATAGAAAACAAATATATATATTTAGA # Right flank : GGTTTTTTCCCATACGCGCTCCGCATTCAGGGAATGTTCCCCGCGCCGCCATTCTTATTATCCTGTACTTTATTTTTTTACGTCATTATTTAGTGTGGCAAAGTCCAGTTCCAGTCAATACTTGCCAAAAATTTTGGCTCATGGGAACAGTGCGCCGTTTTTAACATAGCGCTTATACAGACGTTTTACCGATGCTGGGTTCTGAGCCCAAATCCAACCCGTCGTGCCAGACGCGCTGCCAGATATAAACCTGGTTGTCGGCGATGGACCGCGCGCTGGCAGCCAGTAGTAGAAACAACGGTATTAAAAAGCGAAAACGCATCATGGCGACAGTCCTTGTTGCCAGATTTTATCGTTAGTCTATTTTGAGGTGGGCTTCTTCTCCGCCTTCGCCAGCTCTTTCACCAGCGGCAGCATCACTTTCATCACATCGCGTCCGCGATGCTCAATCCGCCCCGGCAGCGCTTTATCAATATACTGCAGGTTATCCAACTGAAGGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1880537-1881357 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP055412.1 Klebsiella grimontii strain RHBSTW-00054 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1880537 29 100.0 32 ............................. CCTGATCTGCGAGCCCGGGTGGCAACTGGCGG 1880598 29 100.0 32 ............................. TCAGTAGTGCGATAGCGCCACGCTACCGGCTC 1880659 29 100.0 32 ............................. GTTCCTGCCGTCTGTAGGCAGCGCTAAACTCT 1880720 29 100.0 32 ............................. TTACCTTTGTCGCTTTTACAGAGGCAATGGAC 1880781 29 100.0 32 ............................. CCGGTATCGCATCGTTTTGCTTTTACAACCTG 1880842 29 100.0 32 ............................. GGATGCCTGCCGCGCCGCCATGCTGCAGGAAC 1880903 29 100.0 32 ............................. GACGCCGAACCAGAGGAGGATGAGCCAGAGGA 1880964 29 100.0 32 ............................. TACAACATGCTGGCGCAGCGGCATACCATCAG 1881025 29 100.0 32 ............................. CAACCTGTGTGCGCATAGCCTTGATCGCTTTC 1881086 29 100.0 32 ............................. CGTAACGCAAATTCAGGCAGATTATTTAACCC 1881147 28 96.6 32 .............-............... ATTGATCGCGCTTTCTCGCGCATCTCAGAAGA 1881207 29 96.6 32 ...............A............. GGGCGGCCGGTAGTCGTCCTTTCCAATAATGA 1881268 29 96.6 32 .............T............... AACAGCCCACAAAACTTTTTGCATGGGGCCGC 1881329 29 93.1 0 .............T..............A | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGCGATATCGCGGTGTTCTCAAAGGGCAATATTCAGCGCCTGGTCGGCGCGCTGGCGGAGAGCCATCGCCTCACGCTGCATACGCGTTATCAGGTTGACTATATTGAAACGCTTTACGGCCTGGTGCGTTCCCGGCTGGCGGTGGCGATTCTGCCTGAGCTTTATACCACTCACCTTCAGGATCCGGCGTTAAAGGTGGCGCAACTTCAGCAGCCGGCGCTGACGCGAACCGTGGCGCTGATGCGCGGGCCGCAGCCTCTGCCGCCGCTGATAGAAGCGTGTTTTACATTATTACTGAGTTCGCTGCGGGAAGTGAATCTGTAGAGGCCGTTGCTCTCTCAGCTTGTTGTGGTGAAATGCGAGAGAGGTAACGGAATAGTTTGTTGTGCCTTTTAAAATCAAATAGTTATGGCTCTTTAAAAACATCAATTTGTTGCAAAAATGTCGGTAGATTGTTCTTGGCGGATAAATTTATTATAAAACAATAAGATATGGTTAGT # Right flank : ACAGTCAATGTTTCCCGAACATGGTTCTAAAGAGTGTTCCCCCGCAGCTGGCCGCCGCGGGGGCTGATTTACGGCGTCACGATATTGAACCAGAACTCAAATTTATCCATATAGCCCAGCATCTCATCCAGCTTCGCGCCATCGCCGGTCACTTTCACTTCACCCTTATCCTGCGCCTGTTTTAGCGTTTCCTCTTTCAGGATGATTTTGTTCAGCGTGGCGCGATCCAACGCAATGGTAGCATCCGCGTCCTTGGCTTCGGCATCGGCGGTGTGGTTGAGCACGCCGTTTTCCAGCTCCAGCTTATATTTACCGCCATCGTTACCCAGGTCGATATTGAACACCGCTTTGGCGGTTCCGGCTTTCTCACCATTAATATGCACCGCAAGGTAATCGAAGAACATTTCCGGGGTCATCGCCCGTACGGTATCCGGGCTGGCGGTGTTCGGCGTCGGGCCTTTCACTACGCCGTTGCGTAGCTCCTGAGCGCCGGTCAGGTA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //