Array 1 9466-9853 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXET01000024.1 Hafnia paralvei ATCC 29927 Sequence00024, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 9466 28 100.0 32 ............................ TTTTAGCGTCCCCGGCATCTCATGAACATAAG 9526 28 100.0 32 ............................ TGATGTTTATCACGATATGATGCTTGAACGCT 9586 28 100.0 32 ............................ AAGTAGCGGGGGGCGTGGTGCGTTTAGCTGGA 9646 28 100.0 32 ............................ TATAGCTAGCTTCATATACATCACCATTGAAA 9706 28 100.0 32 ............................ AGCTCAACACGACCACCTTTAACGACTGGCCC 9766 28 100.0 32 ............................ TTGGAACCGTGTCAATAACTGCATTTTGAACA 9826 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTTGGTGCAGTGGTAGGAACGTTGTTGGCACTGGCTTCGGCGCGCAGTGAATGGCCGATGGTCAGCTCAATGTTCTTATGCATTTTCGCCGCAATGATGTTGTTCCTGTACGCTTCTAGACCTTCCAAGAGTAGCCGCGTAGAACCTGTCTGAGCGTGACCGCTCGTCTCCCCGTCGCTGAAAGAGGCGGGGAGGCCGACGACTGGGCGTTCGGAGATATCTGCGGCAACCGTGTGTTGACCATATCACACAGCTTTAGCATCAGATACGCAGATGCTTTCAGCCACGCACTCACCTGATCCAAACTCTCCTGCGGGATTTGAACCCCATTCTCCAGTGATTCACTTAGAAATGAAAATCCGTGGCGCAAAACCCTTTTTTCCTACCCACACGTAACGTATTGATTTTATGTGTGGTGCCGAGCCAGAAATAAAAAAGGTCTTTTAACCAAAAATGAGTTACCGCTCTGATTAGTCAAACCTTTTTGCTATTATTCTACA # Right flank : AATATAATCGTGCTAACTATTTTCAGTTTTTGGCATGGATTTTCATTTTTTTAACAGAACATCTAACTTAACTAGGTAAAATCCATTGTGAAAAGACAAAACATTAAAGTTATTTAGCATTCGTTGTGCTTTTTATTTTCCATAAAAACAATTAATTAGCTAATTTCATTGATCATGGTTCAGTGATTTATTGTATTTTGTATGTAAATTGAAAAACACGACAAAGTAATTAAAATGAAACGAAAATGGTTGTGGTAATAAAGATAAAAGTATACATATAACCCCAATAACCGATCTCCCTCCATCGTGGTACTTCTAGAGTGAAAAAATGGAGTAGCGCCAACAAGATCGTGCTTTAGGCTGTTTATTCTTCGGTGTTACCGAAATGTAATAAACAAACTCATAACAAAATGACGATTAAGTCATCAAATAGCCGGAATAGTGCGAACTTAGGTTTACGATGTGAGTTTTTTGTGAAAAAATTGTAGTTAGTTTTTAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 18280-18786 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXET01000024.1 Hafnia paralvei ATCC 29927 Sequence00024, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 18280 28 100.0 32 ............................ ATTGAAGTTGATCCAGAGTATGCCAAGCGGAT 18340 28 100.0 32 ............................ AGGCTATCAATATCGGTAGTGGTGCGCAGATC 18400 28 100.0 32 ............................ ACCTTGTGCAGTACAAGTTCCCTCTAAACTAA 18460 28 100.0 32 ............................ ACTGCAAAGCGCCTCGTCCCCGGCCCTCTGGG 18520 28 100.0 32 ............................ TCAACGACAAAGAGGCCAAGCACCACGTAATT 18580 28 100.0 32 ............................ ACAGCAATTCGAAAAAATGGTCTGGACGAAGC 18640 28 100.0 32 ............................ GACAACTAGTCGGGGGGAACCCTGCCAACTAG 18700 28 100.0 32 ............................ CAACGGAAACCCGCCGCTATCGGGAGAGAGTA 18760 27 92.9 0 ...A....................-... | ========== ====== ====== ====== ============================ ================================ ================== 9 28 99.2 32 GTTCACTGCCGTGCAGGCAGCTTAGAAA # Left flank : TACACAATGCAGCGACATTCAACGGATCCCTGAGAATGTGATGCATTGCACCGTGAGTCGAGTGCAGGTGAAAAGCAGTGCGGAACGACTGCGGCGCAGATCGGTTAAAAAAGGCTGGCTCACCGAGGAACAGGCGCGGGAGCAAATTCTGGATGCCAACGAGCAACGCACTTCACTGCCCTTTATTTCGTTGAAAAGCCTATCCACTGGACAAATGTTTCCGCTGTTTATCCGCCAAGGGAAAGCGCAGTCTCATCCTCAGGCGGGAACCTTCAGTAGCTACGGCTTAAGCTCAATCGCCACTGTGCCGTGGTTTTAGTTTTGTTGGTTTTCAGCGCCCGCCTGAAACTAGACGGGCGCTTCAGCTAAAACCCTTTTTTATTGCTTGCTCGTAACTTATTGATTTTCAATAATCATGGATGATGCAAAATAAAAAGGGTTTTATAAAGAGTAACAGGCTATTGTTTTGATTTATAAAATCTTTCTCCAGTTATTCTACA # Right flank : ACGGGTTTGTCGTTTAGGCTACGAACTCACGGCCGTTCTTTTGCTGCATCCGCAATGATTTAGCCTATCTCAGTCAGCAAAGGCTAATAGCTGGCGCGTGTAGTCTTGAGTTGGATTTGCAAAAACTTCAGCGCAGTTTCCATGCTCAATCACTTTTCCGTTTCGCATCACCATCACCTGATGGCACAGTGACCGCACTACCTGCAAGTCATGGCTGATGAACAGGTAGCTGAGCTGGTGGCGTTGCTGAAGCGTTTTCAGCAGCGTTAAAATCTGTGCCTGCACGGAGCGATCGAGCGAAGAGGTCGGTTCGTCCAGTATCAATAACCGAGGTTCAAGAATTAAGGCGCGGGCAATCGCAATACGCTGACGCTGACCGCCGGAGAACTCGGTGGGATAGCGATAACGAGTTTCTGGATCGAGCCCAACTTCGTTCATAGCGCTGATTACCCGCTCTTCCCGTTGCTGTTCGTTCAGCTTTTGGTGTACCTGCAAGCCCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //