Array 1 418-51 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABMGS010000058.1 Peptoniphilus grossensis isolate MGYG-HGUT-02317, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 417 33 97.0 34 ................................T CTTCTTCTGATGCTTCTTTTGTGACGCCTGCCGC 350 33 100.0 33 ................................. ACTCTGGCATCGGAATTTATCTCGTATTTCTTG 284 33 97.0 34 ................................G TATCGTCGAAGTTCGCTTACGAAACGGCACATTT 217 33 100.0 35 ................................. TTGTAGGCATTTCTTATAGCCTCGTCAACTGTCTT 149 33 97.0 33 ................................G CATTATCTAGGCATGTATAATTTTTCAAACCTC 83 33 97.0 0 ................................A | ========== ====== ====== ====== ================================= =================================== ================== 6 33 98.0 34 GTCGCACCCCTCGTGGGTGCGTGGATTGAAATC # Left flank : TTCTCTCACAAGTTTATGCATGGTTATAGAAGAGATTACAAAACTATAGGTTATATAGACATAGAAATGGAATCTTGGTTAAGTGACTGGTATCAATCAGAACCAGTAAACTACTGGGGAAACTTCGAAGAAATGGCCATTGATTATATGGTAGAAAAAGGATACGCTTGTATAGGAGTGTATGGAGGGATAGTATTAATAGATTAATAAAATGAAAAAAGAGCTGTGAAGATGCAGCTCTTTCTTTGACATATTAGCTATGTCTTTTTATATTTTCTTTTTCAATCCACTCAGTACAACTGATATTAATTTAATAATATCACTAATTAAATAATTTTCAAGAATAATAGATCTAATTATGGATCTATTATTTTTTTGCGTAAATTTCTGATTTTGTAGTTTTTAAAAATATTGTATTAAAATCACGCCTCTCCATTGTGTACGCGGGTGCGTGGATTGAAATTCTACATCATCAGCTAGGATGCAATCAGGTTTTTCTG # Right flank : AAATTGGACAATAAACAAATCAGAAAAGGAACAGGTCGCACCCCTCGTGGG # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCGTGGGTGCGTGGATTGAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-4.60,-4.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 36995-36288 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABMGS010000058.1 Peptoniphilus grossensis isolate MGYG-HGUT-02317, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 36994 33 100.0 35 ................................. CGACAATTTACAAGATGCAACAGTATACAGAAAAA 36926 33 97.0 33 ................................T ATATAATTAGTAACATCAGTTGGTTTGGAATCT 36860 33 100.0 35 ................................. TAAAGGACTTGAACTAGCTTTTTTGGAACTGAAAG 36792 33 100.0 34 ................................. ATGGAAAAATCTTTGTAAAAGCCTACATCGACTA 36725 33 97.0 34 ................................T ATATCCTCACTTTTTGCATAAGATGTAAGGTCAT 36658 33 97.0 35 ................................C ACCCTAGCATCAGAATTTATCTCGTATTTTTTAGC 36590 33 97.0 33 ................................T TTAGCTCGTCTAATCTTGCAGGAAGTTCCTCAA 36524 33 100.0 34 ................................. TGCCATGGAGTATGACGGAGAAGAAAAAGCAATC 36457 33 97.0 34 ................................T CTAATTAGACCCCTAAGCTTATTATAATTGTAAA 36390 33 97.0 35 ................................C ATGTTGATGTTGTAGCACTCTTTATACCATTCCAT 36322 33 81.8 0 .................G......T...G.GGG | G,T [36294,36298] ========== ====== ====== ====== ================================= =================================== ================== 11 33 96.7 34 GTCGCACCCCTCGTGGGTGCGTGGATTGAAATA # Left flank : GTTCAAGCCATGTTATTAAATTCGTATCTTAGAGGAGATATAGAATCCTATCCACCTTTTATGATGGGAGGCTAAAATGCAAGTACTAATAACCTATGATGTAGAAACAGTGTCAAGTGATGGCAAAAGACGATTAAGGCAGGTTGCAAAAGTCTGTTTAGATTACGGACAAAGAGTTCAAAATTCTGTTTTCGAACTAAATATTTATCCTGCAGATTTAGTTCTTATTAAAAACAAATTAGAAAAAATAATTGACCCTAAAAAAGACTCAATTAGAATTTACAATTTAGGGAAAAATTGGGAGAGGAGAGTGGAAACTCTTGGAAGAGATGACTCCTATAACCCAGAAAAAGACTTATTAATCTTATAAGATTATGAGATTTAGAGCTGGACATATAATTCTTGTAACTAACTCATAATAAAACAATGAAAAAGAGACAAAACTCTTAAAAAAATGATTAGCTGTATCTTTTAGTAGTAGAAAAAGGCTAAAAAATGCA # Right flank : GCGTGCAAATATGTTAAAAAAAATTTGCACTTCCTCCCTTGAAACTACAACCTTTCTAACCAATAACTGTATAAATTCTTTTTTGTTTAATTCTAAGTTATCATTTTTAATTTTATTGATCCAAATTCTAATTTCTTTTTTTATGTTTATTGGACCTCCAGTAGATGCTAATAAATTGTTAATTTCATTTCTTTCTTTATTCAATTCATCTATCTTAGATTTTATTTTGTCATTGGCACCAAAGGACATTACATATTCAACGCAGTTATTTTCTTCTTTATCAATTTCATCAAGCCTTTTTTTAAGTGCATTTTTGTCGGTATCTAGCGACTCTAATGCTTTTTTTGTTTCTTGCTCAATTCTGTCAACTAAAACATCAGCGTTATCTAAAATGTAATTTCTTGCTACTGACATAATATATTTTTCTAAGGCTTCTTTTTTTATAGCATTATTACATTTTTTACATCGATATCGGCTATTGCTAGGGTATCTTGTATCAG # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCGTGGGTGCGTGGATTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-4.60,-4.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 2373-211 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABMGS010000057.1 Peptoniphilus grossensis isolate MGYG-HGUT-02317, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 2372 33 100.0 33 ................................. ACTGTACCGCTGCTTGACTTGCCGCCTGGTTTA 2306 33 97.0 33 ................................C ATGCCCTCGTAATAGACTCTGATATTATTATTG 2240 33 97.0 34 ................................A GTCTTTATTAAATCTTGGTTATGATTTAAAAGAT 2173 33 97.0 34 ................................G GATTTCTATCCATTTCAAATGGAACCTTAACTCC 2106 33 100.0 34 ................................. CTATAAAAAGAATTTTTATCAGCTTGTTTAGCAT 2039 33 100.0 37 ................................. GGACTTACTGGGACACCCTTGCCATACTTAAGGTCAA 1969 33 100.0 35 ................................. ACAGCTACCCCTGTAAGTTCTTGCAGTTTCTCTTT 1901 33 100.0 33 ................................. CAGATTGATAAAATGGAAAATCCTCTTTATAGG 1835 33 97.0 33 ................................A GATGGTTTTTGTGCTAAATGTAAAGTTGCAGCC 1769 33 97.0 33 ................................C TTGATTGACTCCCCTATTTGGATTGCCTTTTGT 1703 33 97.0 34 ................................A AAAAATCCCTGGCATAAATATAGTTGCAGTCCCC 1636 33 97.0 35 ................................C TACCAGCTTGTGGCAAAAAAGAAGATGCAGCCAAC 1568 33 97.0 34 ................................A AGGTTAACATATACTATGTTATGTGTTGGGTAAC 1501 33 97.0 33 ................................A TTATAGCTAAAAGCACCCTCGCCGATGGATGTA 1435 33 97.0 34 ................................C ACAGAAAGTGGCGGTGGAGATTACACATCAACAG 1368 33 100.0 33 ................................. CTTGTGCTTTTATGTTTGCCAAAGGTCTTTGTA 1302 33 93.9 34 .........T......................A GCAGAATAATAATTAATAGTAGTAAAGGTAAAAC 1235 33 93.9 33 .........T......................A AAGGTTGATTCTAATATTGCTTTTGAGGATATT 1169 33 93.9 35 .........T......................A AATCCTATTATTCCCGCCATTTTGGTTGTAGGACC 1101 33 93.9 33 .........T......................A GGTATTAACTCATTTAGTTCTTTTGAAAAACTA 1035 33 97.0 34 .........T....................... GTGTATTTGCTTTATTTATACTATTATTTATCTC 968 33 97.0 36 .........T....................... GAGCCATGTACTAACAATTCTTGACATTTAACCACC 899 33 100.0 33 ................................. AAACATATCCTTTTCTATGGCATCAGACCCTAA 833 33 97.0 35 ................................G GTAATGTGATGGGTTATTGTACTCTGTCATCTAAG 765 33 100.0 37 ................................. GAAATTCATTTAAAGAGGATTTCAACAAGTCACACAA 695 33 100.0 33 ................................. AAACATATCCTTTTCTATGGCATCAGACCCTAA 629 33 93.9 35 ..............A.................A TTAGAAAAAGCTATTGATGCAGTAACTTACAGAAC 561 33 97.0 31 ................................A TCGAATTTAACATTGAATATATAAGTGTCTC 497 33 100.0 37 ................................. AGGACTGCATCTCTCCAAATCTTTGGCACTTGTCTAA 427 33 97.0 11 ..........C...................... ACACGGCGAAA Deletion [384] 383 32 78.8 33 TG..-..TG....A..................G AACCCAAGCCGCCCTTGTCCAGGCTCTCAAAGT AA,G [370,373] 314 33 93.9 33 ..........C.....................C TATAACTTCTCCGTACTGGTCGTAAACTTCACC GCCCC [298] 243 33 87.9 0 .........T..AC.....A............. | ========== ====== ====== ====== ================================= ===================================== ================== 33 33 96.5 33 GTCGCACCCCTCGTGGGTGCGTGGATTGAAATT # Left flank : TGCGTGGATTGAAATGCTACGGCTCTTATTACTTTCAACTGACTGCAA # Right flank : TCTATTTTTAGCTAACTGCTCAGGGCTTGTTTTATATTTAGTTATTGCAATCACTCACTTTTTATGGTATAATTAGACAAAATAGTTGAGATGTGCAACTTAATGCACGCTCCCAAAGATTACTATTAATAACTGATATATTGTTATTATTATTGTTAGGATGTCGGCTAAAACACTAACAATTGTTATAACTGTATCAGTTATTTTTTTT # Questionable array : NO Score: 5.44 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:-0.04, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCGTGGGTGCGTGGATTGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-4.60,-4.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [21-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //