Array 1 31418-31259 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEACR010000286.1 Frankia sp. AgB1.8 NODE_74_length_43300_cov_25.262545, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ============================================= ================== 31417 23 100.0 45 ....................... ATCTCCCGAGTGTGGCGGGACGCGAGCACGCCCGCGTTCGGTCAC 31349 23 95.7 45 ...................G... GCCTCTCCAATGTGGCGAGACGCCAGAACGCGTGCGGTCGGTCGT 31281 23 95.7 0 ...G................... | ========== ====== ====== ====== ======================= ============================================= ================== 3 23 97.1 46 AGCAATCGACCGCGTCGTGAGGT # Left flank : GGACACCCCGTGGTGATGGTTGGCCGACCGGGTGGCCGGCGCCACGTGGGTCTGGCCCATCCACAGCCGCTCGGTACCGACGGTCGTGCCGGACAGCGCCTCGACCCGGCGCATCCCCTCGGTCTGCGCGGTGTGCGCCGACAGGCCGGCGGGGCGGATCTGGTGGAGCCGGCGGTGGAACGCGTCGAACTCCTGCGGGGTCGGCTCGTCCGGCCCGGTCGCCGTCCCCTCGGCTGCGGACGGCCCCTTGGCGACGGGCGCCCTATCGGCGGTGCCCGTCGGGTCGGGCGAGGCCGCTGCTTGATCAGGCACGGTGAGCCTCCTCAGCGTGTTTCGGGGACCGGTCCCGTTCGGCAGCACCCGGACGGGTCGGCCGCACGTTCGTTCCTACGTGGTGGTGACGGAATCCAAGCATCCGCGACCACCATGTAGGAACGATCGCGTGGTGGTGAGGTATCTCCCGAGTGTGGCGGGACGCGAGCACGCCCGCGTTCGGTCAC # Right flank : GCCTTTCATGTGTGGCGCGAAGCGAGATCACCTGCGGTCGGTCACCGGCCGACGAGGCGTAGCGGCTGGGGTCGGTCGCGGTTGAGCTCGTCGAGCGCAGCGGCCGTCGCCGCGTCGGCGGGCAGGTAGACGACGAGACGCTGGTCGTCGTCGACGGAGAGCTCAAGGGTCTCGTAGGCGAGCCGAAGCGCCCCGGCGCCGGGGTGGGCCAGGCGAAGGACGCCGGTGGCCTTAGGCAGGCCGGGAACCGTGTCGACCCGGTGGGTGAAGGCCTCGCCGACGGTGACCGTCAGCTCATCCGCCAGCGCCGCCATATCCGGGCGAGCCCGGAACGGGCCCTGTTTGAGGGCCGCGACCTGTTCGTCGGCGACATGGTCCCAGTCGAGGTACGCCTCGCGGGCTCGGACGTCGGTGAAGAGGAACCGGGCGAGGTTGGGCTGCGCGGCCTCCAACAGCCCCATGGGTCCGACGAGCCGCTCATAGCCTGCGGTGTGCGCGAG # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGCAATCGACCGCGTCGTGAGGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.70,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 56103-55854 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEACR010000186.1 Frankia sp. AgB1.8 NODE_2_length_144048_cov_29.172243, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ========================================== ================== 56102 33 97.0 40 ..G.............................. GTCAGCCAGCCACCGAGCACCGGCCCGCCGGCAATGCAGT 56029 33 100.0 42 ................................. ACGCTGGGATTCCGTGAGAGCGTCGGGGTCGACAGTGAAGTC 55954 33 100.0 35 ................................. TCGACCGATCTTCAAGAAAAAGGTAGTTGTCGGTC 55886 33 87.9 0 ..........A..G...........G....G.. | ========== ====== ====== ====== ================================= ========================================== ================== 4 33 96.2 39 CCAGAGATCACCAAATCCGAGTCGGATTGAAAC # Left flank : GTCGAGCCGCGGCCCGAGGTCACGGGCGAAGTCGGCCACGGAGAGGCCGTCGGCCCCCGGCATTCCGCTGCCGGCGGCCACTCGCGCCCAAGCCGCCCACAGCACCTCCGGCTCCGCCATGGCCCGCGGCACCCCACCAGCAGCCGCCCGGCGCCGCGGCCTTCTCGGGCTGACGACGGCTCCGTCGCGCCTGTCGGGCACCCGCCCCTGCCAGCCGCCGAACCGCGCTCTCATCCCGTCCGCCCTCCACTCCATCCGGACCCCCGGCGCGGCGACCGCAGGCCTCGCTCACTACGGACGGACGGCACCGCGGCACGGCCAGAACCTCCGACACGCCGATAGCCCAAGGAGGTTCTGGCTTCAGATCAACATGTGCTCCGACCTGCGAAAACCCGGCCAGAAACGATCGAACGCCCCGCCGCGAGACGATCTCCATCAGGAGGTTCTGGTTTGATCTTGCAAACCCGCAGGTCAGCACATGTACAATTCGGACAGCTGTC # Right flank : CTCGAAGTAGACGTGCCGCTCTTCCGCTGTGGTCCGCACCAGATCGCATATTGCAAGGCGGATGGAAACACCTGGGCGGTCGCGATCACTGGCAGTTTCGGGGCCTGATCCAGGAATCACGTACTTCGGGGGCGAACAGGGGACGGGCACCCAGCCGCGCTTTGGCGCGGCCAGGTGCCCGTCTGGGGAGGCCTGGTTTCGGTCAGCAGGTACCGGCGACAGCGTTGGCGTGGCCGGTGTAGACCCAGGCGTCGGAGAGGTAGCCGGGGGTGCCGTTGTAGGTCGTGTGGTCCCAGAGCGTGGTCGCGCCGTAAGGACCGGTCACCGAGTCGCCTTGCGCGGTGCAGTCGATCGAGAGCACGGTGTCCTTGGGCACGCAGCCAACAAGGCCCGTGTTCCCGTTGGGTCCGGAGCGCAGGTTCAGGCACGGGTCGATCAGGACTCGGCCGCTGCCCGCGGGCACCGGCTGCTGGGCGGTCGACGTCGGCTGCGTCGGTGGC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:0, 3:3, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGAGATCACCAAATCCGAGTCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.70,-4.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 2 58739-58192 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEACR010000186.1 Frankia sp. AgB1.8 NODE_2_length_144048_cov_29.172243, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 58738 36 100.0 37 .................................... TTGCAGCGATGATTCCCCCGAGGGACATGATTTCCTA 58665 36 100.0 37 .................................... CTGGTGATCCACTCCGAAGACCGTTCGGTCAGACCCG 58592 36 100.0 39 .................................... GCTGTCGAAGGTGATGTCGAGGAAGACGCCCTCGGCGAT 58517 36 100.0 36 .................................... ACTTTGGCGGGCTGCGGAGCGGCCTGGACGGGTGGG 58445 36 100.0 37 .................................... GAGCCAGACCCAGACCCGGGAGCCGGGTTGGTGTCGG 58372 36 100.0 35 .................................... GGCGATCAGGAAGGTCTGAAACAGACTAACCTTTG 58301 36 100.0 38 .................................... CAGACAACGTCTACCGCCTCCTTTCGTGTAGCGCGCCG 58227 36 86.1 0 ..T..C......................G....GG. | ========== ====== ====== ====== ==================================== ======================================= ================== 8 36 98.3 37 GTCCCAGAGATCACCAAATCCGAGTCGGATTGAAAC # Left flank : ATTGACGGCCCGCCCGCGATCGTCCTTGCCGCGTCCGCCCGGTTCGCGGCGGCTGGCCTCGGCGGCGTCGGCGCCGCTGCGCAGCTGGCCCGATTGGCCGGCGTGCTGCCCCGTTTCCAGGCGTGGCTGCGTCGGTGATGATGGGGTCATGAGCGGTGGTGCGCCCCTCCAACACGGGCACGGCGACGCCGCGGCCGTCGAGCCGCAGCCGCGGTGGACCAACCACGTCTTCCACCCTTTCCACGCCCCGACCAGCCCGGCGCCCGGACCAGACGGACCACCTGGTCCGCCACCACCCGCCGCCGCGTCGAAGATCGTCAGCCAGAACCTCCGACACACCGACAAACCCGGGAGGTTCTGGCTACTGATCAACATATGCCCCGACCTGCGGAAATATCCCAGAGAAAGATCGAACCGTCCACTAGATGTCGATCTCTGCCGGGAGGTTCTGGTTTGATCTTGCAAACCCGAAGGTCAGCCCGTGTACAATTCGGACAGCT # Right flank : TGGATCGGGGATGGTGATCAGCGAGTTTGTGGTCGTTTGGGTGCGGGGTGTTCGTCCGTCTGGGTTGGCTGTTGGTGGCGGCGCAGCGAGCCTTGGGGGCGAGGAATGGGTTCGGATCGCGGTCGGAAACGGCACGGTGGTGTTGTGGGCGCGAGGCCGTTGGGGGATGTCTGGGGTGGGCCTACGAGCCTGGGGCCCGGACCCGGTTGCGGCTGTGGTGGCTGGGGCGTCGGGATGGCCGGGCTGGCGTGCCGCCCGCGGTCAGGCCGGTGCCGACGGGCGACGTGCGGCCGGTGATGGTGGGCTGGTCGGCCTGCCCGGTGGTTCTGGAGCTGGGGTATGCCGCGGCCCGGGAGCATGAGGTGTTGCGGGGAGGGTTGGCCGTGGCGCTCGTCGAGCTGGATGCGCGGATCGCCGAGGGGACGGCGCTGGTCGGGGTGCTGGCGGCGCGGGTGGCTGGGAGTCCGGCTGAGCGGCTGGTGCGTGAGGCTGAGGAGCTT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCAGAGATCACCAAATCCGAGTCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.70,-4.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 3 74278-73796 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEACR010000186.1 Frankia sp. AgB1.8 NODE_2_length_144048_cov_29.172243, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 74277 36 97.2 37 .C.................................. AGGAACGGTGGGATTCGAACCCACGGAGTCTGGCCTA 74204 36 100.0 38 .................................... CTCCGACCTCCAGAACATGTCGCCGAAGATGACGCCGG 74130 36 100.0 40 .................................... TACAGGTTCCTCCTTCGGTTGAAGCCACACACTGAGGCCT 74054 36 100.0 44 .................................... TACGCGAGTTCGGTCGCCAGCTCAGAAACCCGCTCATAGGGCCA 73974 36 100.0 36 .................................... TCCGAGGCCCACTCGATCCAGCTCGCTGGAATGGTG 73902 36 97.2 35 ...................................A GTCTGCGACCGCGCGCATCTCACTCGCGAGGCCAG 73831 36 88.9 0 ............................G...G.GG | ========== ====== ====== ====== ==================================== ============================================ ================== 7 36 97.6 38 GTTCCAGAGATCACCAAATCCGAGTCGGATTGAAAC # Left flank : CCGACGGCGCGCCCGCGAGCGCCCTCGCCGAGTCCGTCCAGTTCGTGGCGGCAGGCCTCGGCCGCGTCGGCGGCGCTGTGCGGCTGGCCCGATCGGCCGGCGTGCCACCCCGTTTCCCAGCAGTGCCGGAACAGCGATGATGGGGACATGCGCGGCGGTGTTCTCGTCCAATACGGGCACGGCGACGCCACGGCCGTCGAGCCGCATCCGCGGTGGACCAACCACGCCTTCCGCCCCCTCCCACGTCCCGGCGAGCCCGGCGTCCAGACTAGACGGACCATCTGGTCCACCGGCACCCGCCGCCGCGTCGAAGATCGTCAGCCAGAACCTCCGACCCGCCGACAAACCAGGGAGGTTCTGGCTGCTGATCGACATGCCCCCCGACCTGCGGAAACAGGTGCAAGAGTGATTGAACCGCTCGCTCGGCGTCGATCTCTGGCGGGAGGTTCTGGTTTGATCTTGCAAACCCGCAGGTCAGCCCGTGTACAATCCGGACAGCT # Right flank : GTTTTCGCCGTTCGCTGGAACTTGCGTCGGTCCGTCGGTCCGTCGGTCCGTCGGTGATCGGTGGGTCCGTGTTGCCGGGATCGGGGTGCTCGTCCGTCTGGCTTGGCTGTCGGCGATAGGGCGGCGAGCTACGGGGGCGTCAGGTGGTATCGGATGGCGCGCGGGGCCGGCGGGGGCCGTGCGGGGGTGTCGTGCGCGAGACGTCGTTGGCGGGCGTCTGGAGCGGGCATCGGGACCCTTTGAGCCTGGGGGTTCGTACCCGGCTGCGGCTGTGGTGGCTGGGGCGTCGGGATGGCCGGGCTGGCGTGCCGTCGGCGACCAGGTCGGGGCCGACGGGCGACGCGCCGCCGGCGTCGATGGTGGGCTGGCTGGCCAGCCCGGCGGTTCTGGAGCTGGCGTATGCCGCCGCTCGGTCGCATGAGGCGCTGCGAGGCGTCTTGGCGGCGGCGCTCGGCGAGCTGGATATGCGGATCGCCGAGGGAGCCGCGCAGGCAGGGCTG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:0, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAGAGATCACCAAATCCGAGTCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.70,-4.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 4 84057-83663 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEACR010000186.1 Frankia sp. AgB1.8 NODE_2_length_144048_cov_29.172243, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 84056 37 100.0 36 ..................................... CACCACGGCTGTAAGGCCGCCCGCGACTCCTACGAA 83983 37 100.0 33 ..................................... TGTGGCAATAAGCCTGTTACGTCGGAAGAAGGA 83913 37 100.0 33 ..................................... CTCGACGAAGACGCGGGTGCCTCGGTACTGGGC 83843 37 91.9 36 ..T....T........G.................... CAGCTGTAGTTGTTCTTCGCGGTGTCGTGGTTCGAG 83770 37 89.2 34 ..T....T........GG................... TGGTCGCACATGCCGGATCGGCCCGACTTGGGCT 83699 37 83.8 0 ..T....T........G........T....CG..... | ========== ====== ====== ====== ===================================== ==================================== ================== 6 37 94.1 35 GTCGCACCGGCGACCACACACCGAACCGGATTGAAAC # Left flank : CGGTCCCGGCGGTCCGGACCAGGCCCGCCGCCCTGGCGGCTCCGACCGCGGCCCGTCCCAGGAACGTCGCGCGAGTCCACCGCCGGCCGTGAACCGTGTACCCCGCCCCGGCCCCGGGCCGCGGCCGGGCCCACCCCGCAACCCTGGCCAGCCCTGACTCAGGGCTGGCGAGACCTACCCTTCGAATTCGAGAACTTTGTAGTTTGTCAGTGGCTGTCCACGGACGTCCGCTGGTGCAGGTCACGGGCCGTCCGGATTCCGTGGTCGTCCACGCTCGTCCGTCGTTGCCCGCCGGTTTGGCTGCCGGGCGACTGCTGCGTCGTCCCGGCAGTCCTCCTGATCCGGTGGGCCTCGCCGCGTCCTGGCTCCGCTTCGGAACCCCCGGCGCCCTCCGAATCCCCGAGAGGTTCCGAGGCTAGAACCAGGGCAAACCGGACGGCAGTGACCGACTGCCGGCAGGTACTCCGACTGCTACGATCAGAACCCGCAGATCACCCAGG # Right flank : GCGCGTACCCTGCCGATCGGCTCGACGGCGAGCTACGAGAGATCGTGGCGGCCGCTCGCGCCCTGACCGTTACGCGGGAGCCTTCGCAGCCGTAGGCCGCAGTTTGCCCGGCGCGGGGATCGCGAGGACGTGGCCCATGCCGACGGTGGTGCGGTCGCCGAGGCCCGCGTAGGTGGCGAACGTGGCGAGGGCGGACAGGGCGTGGCGGGCGTCGACGGAGACCGACGCGGCTTCGGCAAGCGTGTAGCGGACCGTGCCGACGGCGCCGCGCAACGGCGGGACCTTGGGTTTGACGAGGTGTTCGGCGCTGTGCAGGTCGAACTCGACGACCTGCAGGTTGCGCTCGGCGGCGTCGACGGCGCCGCCGAGGTCGAACGCGGCGCCATCGGGCCCGCGCAGGTCCGGCGCGTTCGTCCGCCAGCGCTGGGCCAGCGAGGTGAAGACCCATTCCGGCTCGGGGAACACCCGCTGGCGGCGGGCGCCCTCCTCCCGGGCCGTGC # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:0, 3:3, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCGGCGACCACACACCGAACCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [3,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.40,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : NA // Array 5 94600-94919 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEACR010000186.1 Frankia sp. AgB1.8 NODE_2_length_144048_cov_29.172243, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== =============================================== ================== 94600 27 100.0 46 ........................... TTACGTGGGTCTTTGAACCCCGGATCGAATACCTGGTTGCACCAGC 94673 27 100.0 46 ........................... AGCCATTCGCGGATCACGCGCGAGCGGTCGCAGGCGGTTGCACCGG 94746 27 96.3 47 .....C..................... CTGCTGACACCTGAAACCTATAGTGAACAGTAGGGATGTTGCACCGG 94820 27 92.6 46 ...A...G................... CTTCCTGGCGATCGCCATGTCGTGGTGTTCGAGGGGGTTGCTCAGG 94893 27 100.0 0 ........................... | ========== ====== ====== ====== =========================== =============================================== ================== 5 27 97.8 46 CCACCAGACACCGAATCGGATTGAAAC # Left flank : TCCAGCAGCACCAGCCACATCAGCCGGCTCGGCCGCGCGGGACCACCTTCTGTCACGTCAACATCCGCAAGTAGCGCGCTCAAAGCAGCTCCCCCGTTGAGCTGGTCATCGCCACGTGGTCCTGGGAATCCACGTGGGCAATGACGGTAACGGTTCGGATCCGGTCAGCACAGCCAGGGTCACGCACCGCGTTGGATTCGGGACTTCCCTGGGCTGGCCCCGGCCGGCTGTCACCCCTGTCTGACGGACAGGACCAGCGATGGCTGACGTCGATCGGTGAGCGCACCGGCCGCGCCACGAGACGATCTTCGAGGGGAGTCCGATCCGGGTGGGCCTTGGCCCCGCCGCGTCCTGGCTCGGCTTCGGAACCCCCGGCGCCCTCCGAATCCCCGGGAGGTTCCGAGGCTAGAACCAGGGCAAACCGGACGACAGTGACCGACTACCGGCAGGCACTCCGACTGCTACGATCGGAACCCGCAGCTCACGCAGGGTTGCACCAG # Right flank : CTCCATCAGGCGGCCTCGAACCCGTGCAGGTACGCCAGCTCCGAGAGACGGAAGCCGTCGAACGGCTCGGGGTCGCCAGTGGCGTGCCTCGGAGGTGGTGGCGGCGCCACCACCTCCATATGTGCCCTACGTAGCGCGAGGGCCCCGATGAGGTTCATGAGTTGATCTTCCAGCGTCGACGTCTCGACCCGTTCGGAACCGATGCCGGTCGGCACGCCAACACCTGCCAGCGGAGGAGGCATTCCTCGGAGCTGGCGCTGATTCTCTATTGACACCAAGATGTTTTATGATCTTTCCGGAAAGATCGATTCTCGCGTTCGCCGAAGCGCACGACTCGCGCAGGAGCCGCAATGATGGTTTTGCCGCCTTTCCAGATCCGTCGCCAGCTTCGGGGCCGTGACGGCGGTGGTCGCCGGATCACGGGTCGCGCGACCACACGTCACCAGACCGCGGGGCCGTCGGCTTCTGGTGGATCGGCCGAGCCCATCGATGCGGCCGGA # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:0, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCACCAGACACCGAATCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : NA // Array 6 121922-120944 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEACR010000186.1 Frankia sp. AgB1.8 NODE_2_length_144048_cov_29.172243, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 121921 36 97.2 36 ....................T............... CGGATGATCACGTTCAGGACATCGATGTCCTTGTCG 121849 36 97.2 34 .....G.............................. TCTTTACGGTCAGTGCCTTGATGACGTCCGAGAT 121779 36 100.0 37 .................................... TCGTCATAGACGCCCTTACCGAGTCGCGCTAGCAGGG 121706 36 100.0 35 .................................... TACGACCACGCCAGGCGGCGGCGCCTCGGTTTCGG 121635 36 100.0 41 .................................... TGTCCTCCAATGCTCGGCAGAGCGTCCCAGGGGATCTGGGA 121558 36 100.0 37 .................................... ACGGTCCGAACGTCGCGGCCGAACTCGACAGCCTCGT 121485 36 100.0 34 .................................... CCCGTGTAACCCGCTCCGCAGGTCTGCGGTGGGT 121415 36 100.0 39 .................................... AGGACGGTGGCGAACAGGCCGTAGGCCTTACGCTTGCTG 121340 36 97.2 35 ................G................... AGCCGGTGGACCCGCTTGCACAGGTACAAGAACCT 121269 36 100.0 38 .................................... TCCACCAGGACGCGGAAGGAACGCGATGGCTCTTGCGG 121195 36 100.0 36 .................................... GCGGAGGCCGGAGTCGATCCGGAAACCGCAATTACA 121123 36 100.0 37 .................................... TAGCCGTCCTGGCTCTGGTCGTACTGCTCGTCGAGGG 121050 36 97.2 35 .............................C...... GTGAAGGAGCAACGCGCAGGGACGTTCTCCTGGGG 120979 35 83.3 0 .C......-.....T.......G.....G......T | C [120967] ========== ====== ====== ====== ==================================== ========================================= ================== 14 36 98.0 37 GTCCCAGAGATCACCAAATCCGAGTCGGATTGAAAC # Left flank : CGGTCGAGCCGAAGCCCGAGGTCCCGGGCGAAATCGGCGACCGAAAGCCCATCAGCCCCCGGCATCCCACTGCCCGCGGCCACCCGCGCCCACGCCGCCCACAGCACCCGCGGCTGCGCCATGGCCTTCGGCATCCGACTCTCGCCCGCCGCCCCCCGCAGTGTGGCCGAACCGACAACAGGCAGGACCGGCCCGTCAACGGCACTACCCCGCCTCACGCCGAACCGCATCACCATGCCGCCGAACCTCCGTTCCGTCCGAGCCCGCCGCGCGCGGGCGGCGGGTCTCACCGGCGACAGACGGACGCGCCCGGCGACCTGGCCAGAACCTCCGACACGCCGACAGACCGAGCAGGTTCTGGCTGTAGCTCGACTTGTGCCCTGAGCTGCGAGGACGCCTATCTCAAAGATCCAATAGGCGATCACGAGTCGATCTTCCAGTCGAGGTTCTGGTTCGATCTTGCAAACCCGCAGGTCAGCCGGTGTACAATTCGGGCAGCT # Right flank : CCCGCAGGACGGTATTTTGCAGCGAGCGCTGCGCCCCCGGAGATCGCCGAGTCTGATTCGCATAAATCCCGAGGTGTGTTGATGCCGGTGAACCTGACGCCGGGTGAGGTCGCGGATGGGGGTGCGCTGTCCGTCTGGTTGGGGTGACGGACGCCGGGGGGATCGCGGGTTGCCGGGGCGCTGATGCTTCGCGCGCCTGGGCGGTCGCGGGCCGTCGGTCTGCGCGAAGGGATCTGGGATGTCTGTGTTCGGCCTGGGCGAGGCGCGGTGGGCGATGTCGTTCGAGCCCGTGGGGAGCGGGGTGTCCGCGTCGCGCGGGTCGGGGAGGCGTCGCGGCTTGTCGGGAGGGTCCAGCGCCGAGCTTCTCGTCGGCCGTCACGTCCGCCGGCTCTTCGGGGGGTCCGGCGGACGGAGCGCGGGCGCCCGGCCGCGTCGGAGCGCGGTCGGGCTGCTCGTCTGCCTGGTTGTTCTTCTGCTGGCCCTGCTGGATGGCTGCGGCC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCAGAGATCACCAAATCCGAGTCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.70,-4.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 7 124811-124197 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEACR010000186.1 Frankia sp. AgB1.8 NODE_2_length_144048_cov_29.172243, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 124810 37 86.5 35 T.C..G.......G.......T............... GATGGTCCAGAACGTCTCTTGCTCCGATTCATCAC 124738 37 91.9 35 ..C..G.......G....................... ATCACTACTAGTCCTCACTTTTCAGTTGTGTCCGA 124666 37 94.6 37 .....G.......G....................... CAGGAGCCAGCCGAGCAAGACCCCGAAGATGAGCACG 124592 37 100.0 35 ..................................... AGTAGAACACCGGCCGCAATCGCCAGAACAATGCC 124520 37 97.3 35 .............G....................... CGTGTAGCCCGGTCCGTAGACACTCGCGCAGGTCT 124448 37 91.9 35 .....C.......G.........G............. GTCTGGGCCTTCTTGTACTGGCCGGCCAGGTGGAT 124376 37 100.0 35 ..................................... CCACCACGACCGACGTCATTCAGGTTCGCGAGCTG 124304 37 97.3 34 A.................................... TTGAGGCCACCGGCCTGGTCCGGGGTCAGTGTGT 124233 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 9 37 95.5 35 GGTGCAGGTGATCACCAAATCCGAGTCGGATTGAAAC # Left flank : CCACCTGCCCCGCCGCGAGCGCCCGGGTGCGCGCGCCGTCCCGTCCGGCGGCCCCGCCGACGCCGGCGGCGCTCGGCAGCGGGCCCAATCGGCCGACGCCCGGCCCCGGCCTGGACCGGACCTGCGAGCGTGGAGCCATCGCCCGTGCCCTCCTCGTCCAGCACAGGTACTGCGACTCCCCGCCCGTCGACCCGCAGCCGCGGCGGACTGGCCACGATCACCACCCCTCCCCGCGACCAGGCGGCCAGGCCAAGCAGCCCGACGTCCCGAGCAGACGGACCGGCTCGGCGCGCCGCGCGACCCCGTCACGAAGACAGCAGTCCGAGCGTTCGACGCCTTGACCGGCCCTGGAGAGGTTCTGGCTTATGATCGACATGCCTTCTGACCTGACCGGATGATGGATTTGAAGATCGAATGTGGCGAGGGATGCCGACCACCGCGAGGAGGTTCTGGTTTGATCTTGTAGAGCCGCAGCTCAGCCGGTGTACAATTCGGACAGC # Right flank : CAGCGGGCCAGGATCCGGGCGCGGCGGTCAGCAGGGTGCAGGTGCCGCTCTGCCTGGCGATAGGCGAAGAGGTCGGGTTTGTTGTGGCCGGGTGAGTGCGTCCGTCTGGTGTGGCTGTCGGGGGGTGCGTCGAGCTACGGGGGCGGGAGATGGGTTCGCGGGTCGCTCGTGGTGGGGCGGGGTCCGGGGCAGGACCTCGAAGGCGCGGCACGGCTGGAGGCCATCTGGAAGGGGAATGCTCCTGGCCTCGGGGCCAGGACGCGGTTTCGGTTGTGGTGGTTGGGGCGTCGGGATGGCCGGGCTGGTGTGCCGCCCGTCGGCGTGTCGATGGTGGCCGCGGTTCCGGTGTCGCCGGCGGGCTGGGCGGCGAGTCCGGTGGTGCTGGAGCTCGCCTCGGCGGCCGCGGGTTCGCATGAGGTTCTGCGCGGGGTCGTGGCGGCGGCGCTCGTCGGCCTGGACACGCGGATCGCCGAGGTGTCGGCGAGGGTCGATGTGCTGGT # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:0, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTGCAGGTGATCACCAAATCCGAGTCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : NA //