Array 1 2966-50 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGFG01000001.1 Thermoflavifilum aggregans strain DSM 27268 Ga0170452_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== =============================== ================== 2965 45 80.4 30 TAAT.....T.GAG.-.............................. CCGGAAAATTACGCCTGATCCTCTGTAGGA C [2956] 2889 46 100.0 30 .............................................. CCGGTGCGACTTGGATTATTCATATCTCCA 2813 46 84.8 20 .....................................C..TTTTTG AATGATAAATAGCCGTCGCT Deletion [2748] 2747 46 100.0 30 .............................................. CTGAAGGCAGAAAGGGCAAGGTTAAGGCAT 2671 46 100.0 30 .............................................. CCGTTTACTATCACTTTTTACAGGTTGCCT 2595 46 100.0 30 .............................................. ATTTATAGATATGCTTACCACAAAATCAAA 2519 46 100.0 30 .............................................. TTATGGTTTTTAGGCGGCTTCGTGACAAGT 2443 46 100.0 30 .............................................. AGTCTGCGATTCCATTCGATAAAATTCATT 2367 46 100.0 30 .............................................. GGGCGGATTTGTAACCGCTGAATGGCTATC 2291 46 100.0 30 .............................................. TGTATTAAGTTTTAATTTATTAGCTAACTC 2215 46 100.0 29 .............................................. ATAAAATTTCGACTTTCCTATCAATTCTT 2140 46 100.0 30 .............................................. GATCAGATAAGCCACGCCTGCGGTTCCGGC 2064 46 100.0 29 .............................................. GTGAAAGAATACGGGAAGAATTATTTGAG 1989 46 100.0 29 .............................................. AACACCTCTTACTTACTTGTCGTAGGATG 1914 46 100.0 30 .............................................. AATGGTGTAATTAACCTGAAAATCAACGGG 1838 46 100.0 30 .............................................. TTATTCATCATTTACGCCTTTTACCTTTTA 1762 46 100.0 30 .............................................. ATGCTTCGTTTTCATAAAAAATGGGCGGAG 1686 46 100.0 30 .............................................. GCAATCTAAGATTGCTCCAACGATGGATGC 1610 46 100.0 29 .............................................. CAACATATTATCGTCCTGATGAAATTAGA 1535 46 100.0 30 .............................................. TGGTGTGGGTTATTTAATTTATAGATCCAC 1459 46 100.0 30 .............................................. GTGACACAACCGCAATTGATAGTAGTGCAA 1383 46 100.0 30 .............................................. ATGCTTAATGCCCACCGACGGTGGGCTTCT 1307 46 100.0 29 .............................................. TGTTATCTTGGTTGGTTACTTAAAAGCAT 1232 46 100.0 30 .............................................. AATGTTTACCAATGTTAATACATTAGGTAA 1156 46 100.0 30 .............................................. GTGGTCCGCGGCGTATTTAAAGCCGGGTGT 1080 46 100.0 30 .............................................. TTATTCATTATTTGCGTTTTTTATCTTTCA 1004 46 100.0 29 .............................................. GTACAGTCTCCTATACCGGAAATTTCTGC 929 46 100.0 30 .............................................. ACCCCTGTTCTTGAATAGATGAGATTGTTC 853 46 100.0 29 .............................................. GTATTGGATTGATCCTGTATTAAATAAAT 778 46 100.0 30 .............................................. TTCTGGAATAAGGGTAAGGAAAGAACGGTC 702 46 100.0 30 .............................................. CTTAGATGAATTGAAATCCGATAAGTACGA 626 46 100.0 30 .............................................. TGGAAAGGATTGACGCATAACTGGGATTAG 550 46 100.0 29 .............................................. ATAGACGACAAGACCCTATACTCGTTGTT 475 46 100.0 30 .............................................. TGGCTTTGTTAGTATGACCGGATCGAGTTC 399 46 100.0 30 .............................................. GTTTGCTAACATACTGTTTACTTTTTGCGT 323 46 100.0 31 .............................................. TGATATCTGCTCAATGTAGTCAAAAGCTTCA 246 46 100.0 30 .............................................. AAACGAATATTTTGCAGAACTCCAATTGTC 170 46 100.0 29 .............................................. GCAATGTAGGAGGAAGCACGTTGGCTTCC 95 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== =============================== ================== 39 46 99.1 30 GTTGTGATTAGCTTTCAAATTTGTTGTAGCTTAGCTCTTTAACAGC # Left flank : ATTTACGGAGGTAAAAACCATTCTTTCTAGCGGCAACGTTGCCTTTAATTCTTCAACCCGTAAAGAAGAGTCTATCGCACAAACAATTGAAGCACAGCTTCAACAGCAGTTGGGCCGCAGCTTTCCGGTTACTGTACGGTCGGTGGCGCACCTGCAACATTTGCTTGCTTCAGATCCGTTCAGCAGACACCAGGTACCTGCAGGAGCGAAACAGGTCATAACATTCTTGTGGAAACCGCCGGATGTAAAACTGAAATTACCCATTGAATATGAAGGTGTCACCATTCATCAGGTGCAAGGCTTGGAAGCGTTTACCAGCTATATTCCTCACCCAAAAGGACCGGTATTCATGAGTTTATTGGAAAAAACTTTTGGCAAAGATCAAACCACCCGCACCTGGGAAACAGTCAAAAAGTGCTTTGTTGCATAAGACAAAGGCAGAGGTTGTGATTGGCTTTCATTTTTCAACGAAGTTGAAAAACACGGAGACCTTTTTCAGA # Right flank : CATGCGATGAGTATTGGGGTGAAGATTTTTAGTTGTGATTAGCTTTCAAA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTAGCTTTCAAATTTGTTGTAGCTTAGCTCTTTAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 2 1362219-1363144 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGFG01000001.1 Thermoflavifilum aggregans strain DSM 27268 Ga0170452_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 1362219 37 100.0 34 ..................................... ACCCCCAAATTAGTGCAACAATAAAACTTATTAC 1362290 37 100.0 35 ..................................... TTCTAACTTTCACATCCTTTAACCTCAATCCAAAT 1362362 37 100.0 40 ..................................... ATATTCATTCCAGTATTCAAACATCCAAATATCCCTTTCG 1362439 37 100.0 39 ..................................... CTTAAATCTATTTTGAAATACCTACAATTCAACTTGAAT 1362515 37 100.0 39 ..................................... TAAACTTAAGAAATTCAACTTCAATTCCTTTATTCAGAT 1362591 37 100.0 38 ..................................... AATTTGGTCATGCAAACGACAACCAGAATGAAATGTAA 1362666 37 100.0 37 ..................................... ATGCAAATAGAATAACCATTCAAATCAACCTTAAAAT 1362740 37 100.0 37 ..................................... CGCAAAATTCAGGTTGCCTTCTTTTAATTACTTTTTT 1362814 37 100.0 40 ..................................... ATCCTGTCGAATAATCAATAAAGTACTCCTGTTCATAAAC 1362891 37 100.0 36 ..................................... ACTTTAAATAAATTTCAATAAATTCATCCACGATCT 1362964 37 100.0 35 ..................................... CCTGTTTCGGGATCGGGCAGGACCCGATCCCAGAA 1363036 37 97.3 35 ...............................C..... CCTGTTTCGGGATCGGGCAGGACCCGATCCCAGAA 1363108 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 13 37 99.8 37 ATCATTGAACCACATCCAATACAACAAGGATTGAGAC # Left flank : ATTAATCAAGATAGGTGGGAATTACTTCCTTTACTGAAGGAACGCATACAGCAGATTTTGCATATCATAAACGACGAACCCATGAAATCTACAGATGTATTTTCTCTGATTATGTATGATATTGAAGACGACAAAGTAAGAACAGCCATTTCTAAATATTTGATTGAAAAGGGCTGTATTCGGATACAGAAATCTGTTTATATCCTAAAAGCTCATCATAGGGTCTATAAGGAGATTGTAAGGGCATTGAAAGAAGTACAGTCGAGTTATGATAACCAGGATAGCATTATTTTTGTGCCTGTACCCCCTACTGTACCGGGAAGCATGCAGATTATAGGTAAGGAAGTGCATATAGATCGGTTACTTAATGACCCGAATGTATTGTTTTTTTGATGCTAAAAATTTTAACTTTGGGTTAGATGTTAATTGTCGGATTTCAGAAGAAGGGATGGGTTTGTTCTTTGTATTTATTTGGGAATCAAACGTTTGTAAAATTTACT # Right flank : CAAGGAAATGTTTACCTGCTACCTTCTTTCCTTTAGGGAAAAGATTCGGTGGGGAAGGGATGCATGCTCGCTGCCGATCTTGCAGAAACTATCCTTATGTTGCTCAGCATAAGAACAATGAAAAAGACAGAAACTCTGGAGCTCATGAATCCCAATGGGTACGCATGAAAGCATGCTTGCAAAAGCATTTCAACTGCTCTGGTTCAGTTGCTATCTTCCAATTTTCTGTCAATCTAAATCCACCACGCGAATCCGGCTTTCATGCCTGTATTTTTTGATTCTTTCAGATTATATTTGTGCAGATTCATTGCACTAAAACTTATTAACTATGCCTACAAATAAAAATGCCTTTATTAGGTTATTGGCGTTGGATAAATTATTATCAACAGGGTCCGGATGTACGTTTAATCAATTGCTTGAACGTGTTAATGAAAGGCTTATCGAAATGGGTATAACTCCTATCCAACGAAGACAATTGTACAATGACCTGGCTAACATGG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCATTGAACCACATCCAATACAACAAGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.90,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 3 2053031-2048918 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGFG01000001.1 Thermoflavifilum aggregans strain DSM 27268 Ga0170452_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 2053030 30 100.0 37 .............................. TGGATTGGTGTCGTTGAACCATTTGTGAGCACAATAA 2052963 30 100.0 36 .............................. GAAATAGTTGTGCAAAAAGCCGTTTCAGCAATGAAT 2052897 30 100.0 34 .............................. GTGCAGATTGATAGTGTATTTGGTGATATTTCTG 2052833 30 100.0 36 .............................. CAGGGTAAGGAAAAAGATGTGGTGGTGGATCAGGAT 2052767 30 96.7 36 ...............A.............. ATTTTTGCCGTTCTATTCATTATTTACGCCTTTTAC 2052701 30 100.0 35 .............................. CACTTTTACCGGGCTTTTCAAATACGTCACTAAAA 2052636 30 100.0 36 .............................. AGTTCTTCATTTGAAATTTCAATTCCAGCCTCTTTT 2052570 30 100.0 36 .............................. AAATTTTAGTAATTCAAATTTGAAACCTTTTATGAA 2052504 30 100.0 34 .............................. ATATTTTTTTTACAGTAACTAATGCCGACTTCAT 2052440 30 100.0 36 .............................. AAAAATTTCGAAAACATTCAAATAACAATATCTTTA 2052374 30 100.0 36 .............................. CTACATCCTTAATCCGGCCCTGATAAGGTTGAAGCT 2052308 30 100.0 34 .............................. GTGTTACTTTGACCGCCAGGGGCCAGTATTGCTG 2052244 30 100.0 35 .............................. GCAAAGATTGGTTTGATAGTAGGGGTTGGAGCAGT 2052179 30 100.0 36 .............................. TCTGCCATGTGTCTGGAGGATTTAATTGAATGATTT 2052113 30 100.0 36 .............................. TGGTAAATACACAATTTCACCATACACAAACTCAAA 2052047 30 100.0 35 .............................. CAATTATTCCAACAATCTTCAATAAATCTAACAAC 2051982 30 100.0 37 .............................. CGCAATAAGAATACAAAATTTTATATTCAAAATTCAA 2051915 30 100.0 36 .............................. ATTTTTTAAATTATCTTTTTTCATAAAACAAAAATT 2051849 30 100.0 37 .............................. TGGTAAATACACAATTTCACCATACACAAACTCAAAA 2051782 30 100.0 36 .............................. ATTGTTGAACCCACCTGAAACGTACCCGTCTGCCCG 2051716 30 100.0 35 .............................. TGATTAGCAGTCGTTGGAGGTAAATAAAACGTATC 2051651 30 100.0 36 .............................. GTTATACAGCCGGAGCCCTGAGAGCACCAAACCGGC 2051585 30 100.0 37 .............................. ATACCAAAAGCAAACCACAACAACCGATAAATTGAAT 2051518 30 100.0 35 .............................. AAAAAGCAACTTATTACCTATACCCGGAGGATTAC 2051453 30 100.0 35 .............................. TTTGAGCATTTGGGTAAGCTTTCCGGATGAAGTAA 2051388 30 100.0 37 .............................. TTTGATAAATTGAGTAAAGGAAATGAGATTGTTCAAA 2051321 30 100.0 36 .............................. AAAGATTTCGCATATCTTATCATATTCCTTTGCCCA 2051255 30 100.0 36 .............................. AATGAATTTTATCAAATGGAATCGCAGACTTATTTT 2051189 30 100.0 37 .............................. AAGTTATTGCCATCATAGCCGGTTATACCCAGCGGAT 2051122 30 100.0 36 .............................. CATAATTCAACAATTCAGTAATAAAAGAAACTTCAT 2051056 30 100.0 36 .............................. CAAAGAAATAAAGGTTCAATAAGAAACAAAAACAAA 2050990 30 100.0 36 .............................. TTCCAATTTGTAGGTCTAGACCCTCCTGTAAAAGTC 2050924 30 100.0 36 .............................. ATAATCTTCAATGATCCTGACTACATACTGCTTTTT 2050858 30 100.0 38 .............................. TTGAAATTGAATTGATCACTATCTAATATCAAATAATA 2050790 30 100.0 36 .............................. CGTTTAAATTACCATCTATTTTCGCATTGGAACTTA 2050724 30 100.0 37 .............................. TACGATCGACTTTCATTACTTTGTTACGCAAATGATA 2050657 30 100.0 36 .............................. CAGGATGATAACCATCCCATCGCCCAACACGTGAAT 2050591 30 100.0 35 .............................. ATTTGTTCTTAATAACGGCGAAAATATCGCCTATT 2050526 30 100.0 36 .............................. AGGCTATCAGCCTCGAGGACATATCTGAACCCTGCA 2050460 30 100.0 36 .............................. GTCAGGGATTCGATTGCTTATCGAGAGCGTGTCGTT 2050394 30 100.0 36 .............................. ATACCCTTTTTGCTGCAATCCAACGAACAAAATATT 2050328 30 100.0 37 .............................. AAATTACTGCGGTCAATTTATTTTCAATATCATTCAG 2050261 30 100.0 37 .............................. ATCCTATCATATGACACATGAAACAGGTGTCCAAACA 2050194 30 100.0 35 .............................. AATGAACTATACCATTTACCGTTCACATAGATTGA 2050129 30 100.0 34 .............................. CAGGAAGCATTTTTTCATACCTGTCTGATTTCAA 2050065 30 100.0 36 .............................. ATACCCTTTTTGCTGCAATCCAACGAACAAAATATT 2049999 30 100.0 36 .............................. CAAGCTGAGAAACGGGCTGATAATACGTTTGTACGA 2049933 30 100.0 36 .............................. GAATATCGTTCGTGAACTTATTACATGCGCTCATGA 2049867 30 100.0 36 .............................. TGAAATAACACTGTAAACCCCCTTTTACCAAACCGT 2049801 30 100.0 36 .............................. AAATCTCGCTAAATCGAAAAAATCCCTGCTAATTTC 2049735 30 100.0 36 .............................. TGAAATAACACTGTAAACCCCCTTTTACCAAACCGT 2049669 30 100.0 36 .............................. AAATCTCGCTAAATCGAAAAAATCCCTGCTAATTTC 2049603 30 100.0 36 .............................. CGCTTAACTTGTTGCCCAGATTGCGTTAACACCTGA 2049537 30 100.0 35 .............................. AATGAACTATACCATTTACCGTTCACATAGATTGA 2049472 30 100.0 37 .............................. CCGCCTAAATTATTATACCATTTGCCGTTTACATAGA 2049405 30 100.0 36 .............................. CTAATTATAGCCTTCCCGCAGGCCAGCAGCATGTGG 2049339 30 100.0 34 .............................. GCAGTGGTGCAGAAAAAATCAATTATGCTAAATC 2049275 30 100.0 36 .............................. CTAATTATAGCCTTCCCGCAGGCCAGCAGCATGTGG 2049209 30 100.0 35 .............................. ATTCCAGCAAGGCCTTCAGGATGCTTCCCCGGGTT 2049144 30 100.0 37 .............................. ATATTATCGTATATGGCACTTGGAAGGTGGACTTCAG 2049077 30 100.0 35 .............................. TAAAAAACCACAACAAGGACGGCTTTAATTCATAC 2049012 30 100.0 35 .............................. TCAAAACCCGTGATGCACAGCGGATCGTTTACCGA 2048947 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 63 30 99.9 36 ATCTTAATCGGACCATAGAGGAATTGAAAC # Left flank : ATGTAGATGAAAAACGGGTATCGAAAATGTTAAAGTTATGCAGGCGATATTTAAACTGGATACAGAATAGTGTGTTTGAAGGAGAGATAACGGAAGTTAAATTAAAAGAGCTAGTACATCATGCAAGCAGGATTATGGATACAGAATGCGATAGTCTGATTATTTTCCGTACCCGGCAGGAAAAATGGCTGGAAAAAATGGTAATAGGAAAAGAAAAGAATGAGATCAGCAATATGATATGAATGATATTTGATCAGATACTGTTGATTATAAGTAAATTATATATTCTTTTGTTGTCGATATGCATGGTATTATAAAAATCTTTGTTTTTCAAATATGATGCATAGAAAGGACAGTAGGTCGGGTGGATTTTTGGGTCTTGTCGTCGAAGACAAGGGGAAAATCAGTTATGCTCATTCGACGATGAATGGAAGAATAAATTTTATTTTTTACTTTTGCAGATGTGCTGCAGTTCTATTTTTTTATTTTTTTACAAACGG # Right flank : TCAAAACCCGTGATGCACAGCGGATCGTTTATTGAGATCTCAATCGCACCATAGCAAACCTGCTAACATACAGATTGAAATTTGGGTAGTAGAAACTTGTGTAATACTTCTGGCGAATGAAAATTACTACCATTTTATTGTTGGCAATTGGTGTATTCTATTTGTCTTTACTCACGCATGTAACGGGTATTCTTCTGTTTTAAATGTTATTGAAACCATCCACTGTCAGGACTGCGTATTTGCACTCACTGTTGTGCTCAGGGCCTTTTTTACGGCAGGGGCTACCTTCGTACCTAAAAGTTCTATAGAGCGCATCACGGTGCGATGAGGCAAGGTGCCTACCGTCATTTGTAGCAGAAACCGGTCGTGATGGAACAACTCGTGTTGATATAAAATCTTCTCAATCACTTGTTCGGGACTACCTACAAAATTGGCCCCGCGGAGCGTAACAGAAAATTCAAACTGTTCTCTTGTCATGGGAGACCAGCCTCTTTCACGTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTTAATCGGACCATAGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : NA // Array 4 2841669-2840791 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGFG01000001.1 Thermoflavifilum aggregans strain DSM 27268 Ga0170452_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 2841668 46 100.0 30 .............................................. ATGCGATGAGTATTGGGGTGAAGATTTTTA 2841592 46 100.0 30 .............................................. TTTCAGATTTATTTCTAAGAAGGAATTTGA 2841516 46 100.0 29 .............................................. TGTACCGCTTGATCCTGAACTGGATTACC 2841441 46 100.0 29 .............................................. CTGCAATTTTGTGGACAAATCAGCTGCAG 2841366 46 100.0 30 .............................................. ATGAAACAAAGGCTGGATTACTATGGTTTT 2841290 46 100.0 29 .............................................. AAGCATGAAGTAATACATTTACACAATAT 2841215 46 100.0 29 .............................................. TAGTTTTATTTATTAACTTTTAAATTTTG 2841140 46 100.0 30 .............................................. TTAACTTTAAAACATGTTTATATGAAGTGG 2841064 46 100.0 30 .............................................. TTATGCCAGGCACGTGTATTATTACATAGT 2840988 46 100.0 30 .............................................. AACTCCATTTATCATGCATTTTAGACAAAT 2840912 46 100.0 30 .............................................. TTATGCCAGGCACGTGTATTATTATACAGT 2840836 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== ============================== ================== 12 46 100.0 30 GTTGTGATTAGCTTTCAAATTTGTTGTAGCTTAGCTCTTTAACAGC # Left flank : | # Right flank : AGAACTTGATGAAACCCTCTACCATGGAGGATTTCATCAAGTTCTTAGAATTAAAAAACTGTTGCTAGGCTACATTTTTTATTTTCTCTAGGCTGTTTTTCTTGGGTTATGGCTATCAAAACAGCTCTAACTGTTGTATGGTGGAAGGGGCATTTACCTGCTCTCTGCCATAAAATACTTCTATCTGACCAAATTGTTTGTCGGTAATTGCCATGATGCCTATATGACCTTTAGGTGGCAGGATTTTTTTCACCCGCTGCAGGTGCACTTCCATATTTTCCCGGCTGCTGCAATGTCGGATGTACATGCTGAACTGAAACATCTGAAATCCATCGGCCAGCATGAGTTTCCGAAAGATGGCGTAATTTTTCCTGTCCTTTTTAGTTTCAGTAGGTAGATCGAAAAAAACAAGAATCCACATAATCCGGTAAGCGTTTAATCGGGAGTACCTCATGTCATGTTGTGTATTTGAGAACCATTTTTCCTGCTGGCGGGTGGTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTAGCTTTCAAATTTGTTGTAGCTTAGCTCTTTAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA //