Array 1 52076-51025 **** Predicted by CRISPRDetect 2.4 ***
>NZ_CAJSKB010000031.1 Escherichia coli isolate Fecal samples, whole genome shotgun sequence Array_Orientation: Reverse
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================ ================================= ==================
52075 28 100.0 32 ............................ ATTAACCGCTCCTGAGACCTTTCAGACATTCC
52015 28 100.0 33 ............................ GGTTAGGGGTATCGGCGCGCTTGACCTCCTGAG
51954 28 100.0 32 ............................ CATTCCGGACTGGCATCAATAGCAACCGGAAT
51894 28 100.0 32 ............................ GGAACCGTGGCGGCTCGGTGGTTCTAGAGATC
51834 28 100.0 33 ............................ GGTACCTTGCAGGCTCAAAAATTGCTTGATTTT
51773 28 100.0 32 ............................ TCTTGCGTCCCCTGAAATACATCAGGGGATTT
51713 28 100.0 32 ............................ TTTTGGGGATACCTGTGTAAACCTTGAATTCT
51653 28 100.0 32 ............................ TTGTTGCGTGTTGTCGCATCCAGGATGCGACA
51593 28 100.0 32 ............................ TGTCAGGGCAGGCCCCGACACCCAGAACGTGC
51533 28 100.0 32 ............................ TTCAGCAGCTCTCGAACACGTTCCCAACCTTT
51473 28 100.0 32 ............................ ATGCGGTTGGTAGGTGGTCGTAGACCGTCAGT
51413 28 100.0 32 ............................ GTTCCGTATACCAGTGATATGCAGAAGGAACA
51353 28 100.0 33 ............................ AGGAGCATTGGCGGAGGGAACGCGAGCGCGGGT
51292 28 100.0 32 ............................ GAATCTCGGCGCGACGGCACCCGCCACCGGGG
51232 28 96.4 32 .G.......................... AGTTCGCGGCAGACATACACGCCGGGAGTTTT
51172 28 100.0 32 ............................ CAGCGGGGTGATTGAATATTTTGGCATCAGAC
51112 28 100.0 32 ............................ TTTCTGCTGTTATCGCCGGGTTGCACGAGTGC
51052 27 92.9 0 .......................C-... | T [51033]
========== ====== ====== ====== ============================ ================================= ==================
18 28 99.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA
# Left flank : TTTTTATGCGCGCCATGCCCACCGCATACAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTATATAGATTGATTCGTTTGGTTACGCAATGAACACACTGTTGGTGGGACGGAGATTATGACTGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAATCGTCCCTTTTTTTAGGGCGAAATGTAACTCATTGATTTTGTTTACTGCTATTTTGAAGTCTGGAAAAAGGGGGTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA
# Right flank : CTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCATAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAG
# Questionable array : NO Score: 6.23
# Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37
# Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37
# Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41
# AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: R [0,5.92 Confidence: HIGH]
# Array family : I-F [Matched known repeat from this family],
//
Array 2 62055-61135 **** Predicted by CRISPRDetect 2.4 ***
>NZ_CAJSKB010000031.1 Escherichia coli isolate Fecal samples, whole genome shotgun sequence Array_Orientation: Reverse
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================ ================================= ==================
62054 28 100.0 32 ............................ GCCTCAAAATCCCTTGCGTGTTTTTGCTCCCC
61994 28 100.0 32 ............................ ATAAAGATAATAACACAATCGTGTCTGGATTT
61934 28 100.0 32 ............................ AGGAACCGCGTCAGCCCCCTGCAAAGCTCATT
61874 28 100.0 33 ............................ TGGCGCGCCTGGAGGACATCCCGGAAGACCAGC
61813 28 100.0 32 ............................ GGTAACGGGTCAGGCCGACCGTGGAATACCGC
61753 28 100.0 32 ............................ ATAAAGCGATCGACGCGGTTCCAGCCATAGAA
61693 28 100.0 33 ............................ TGATGCATCACAAACGGGAAGGGTAACGGGCGA
61632 28 100.0 32 ............................ AGACATCTGCTCAATAGAACGGGTGATCTCAA
61572 28 100.0 32 ............................ AGATCCAGTTCATCATCCAGCGCAGACTCTTG
61512 28 100.0 32 ............................ CGTCACCCGCGCAGCAGTCACACGGGCGCACG
61452 28 100.0 32 ............................ ACCGCCGGGGCGGTTTCCCCGATGAAAAGGAA
61392 28 100.0 32 ............................ GTGGCGCTAGCAATGAGATTTGCGGAAAAAAG
61332 28 100.0 32 ............................ GTGCTGCCCGCCAGCGTGGCGTAATTGTCACA
61272 28 100.0 32 ............................ AAAAAGTTGCGCCGCGTGACCGGCACTATAGA
61212 28 100.0 20 ............................ CTGAACGTTGAAGAGTGCGA Deletion [61165]
61164 28 78.6 0 CC..................T...C.CT | C,A [61138,61141]
========== ====== ====== ====== ============================ ================================= ==================
16 28 98.7 31 GTTCACTGCCGTACAGGCAGCTTAGAAA
# Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCTGGTAGGTTGGTTAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA
# Right flank : ACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAGT
# Questionable array : NO Score: 6.26
# Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37
# Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37
# Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41
# AT richness analysis in flanks prediction: R [50.0-60.0]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: R [0,5.51 Confidence: HIGH]
# Array family : I-F [Matched known repeat from this family],
//