Array 1 53630-52611 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADRFZ010000012.1 Fusobacterium necrophorum strain DD41 JD55_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 53629 30 100.0 35 .............................. TTCGTTGCTTTTCTTTCTAATAGCAATAGAGATAG 53564 30 100.0 35 .............................. GAATGAATTGATTATTACTGTTTATCCGGAATCTC 53499 30 100.0 36 .............................. GAAATTCCAAATACAACGAAATATGGAGAAGCAATT 53433 30 100.0 37 .............................. GGTAAATCAGAATTAATTCCTGTTAACATAATTCCAG 53366 30 100.0 38 .............................. GAGAAAGTTTTCAATTCCTATTGAAGAAAGAAGTTTCC 53298 30 100.0 37 .............................. ACTTATACAAGGCAGAAGAACTTTTATCTAAGACACA 53231 30 100.0 36 .............................. TGATACTATTATAGCACTTATAACAGGGACATACAA 53165 30 100.0 35 .............................. CTATTTTTGATTTACAAGAAAAATTAGATTTGATA 53100 30 100.0 35 .............................. GCATAATAATACTTCACCATTATGCACTTTACCAG 53035 30 100.0 36 .............................. TGAGACAACTGGCATACAAAGTAAATATGTCACATA 52969 30 100.0 37 .............................. GAAGAAATTTTGGAAAGTGATTTAAGGGTATCTATCA 52902 30 100.0 35 .............................. CTATTTTTGATTTACAAGAAAAATTAGATTTGATA 52837 30 100.0 35 .............................. TATCTCAAAATGTCGGAATATGATTATTGGAATGA 52772 30 100.0 37 .............................. CATTCTAAAGTAAATAACACTTTTACCCATTCTTTGT 52705 30 100.0 35 .............................. TATCTCAAAATGTCGGAATATGATTATTGGAATGA 52640 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 16 30 100.0 36 CTTATAATAGAAACAGATTGAAATGTAAAT # Left flank : GCATTTAATTGATTTTGAATGTATTAATGAAGTAATTTTAATAAGAATATTAGGAATGACACAACAGAATATACTGTAGATAAGTATCGAATGGAGGTCTTCATAGGAAATGAATTTTAACTATAAATTTTAAAGAGCTGATTACTATGTGGACTCGTTTTAGGTGAAAGCTTCCACTAATGATAGTATGGCAATATACCTTGAGGTTAATTGATAAAAATTTATTTAAGAAGAAATGAAAAAATAGATTAAAATTGTCAGTAAAATATATGAACAAGAATAAAGAAAAGTATATTAGAGCCAAATAATATAAGTTTTTATTTGTCGACCCTCAATAATGTAAATTTTCTGAGGGTTTGACAAACTTACTTTTAGTGAGGGATTAGGGATGATTTTGACATTTTTTATCAATTGAAATTAATAAAAAATGATACCATCATAACAGGTCGACAAATTTGGGAGTGAAAACTAGCTGAAATAAAGGGCTTTATCCTAGTCGG # Right flank : TTGTAGACTAGGTTCTTTGTCAAATCGTGTTGGTGAAAAAAACAAAATAATAAAATCGCTAGGGGAGGAATCTTTTAGATTTCTCCCTCTTTTAATATGCTGTTAGAACTACAAATTAAGATTCTTCTGCGCAAGTTTTGAAAACTTTTGTAACCATATGAAATCCGTTTCATCAACTTAATCTTTTGATGGAAGCCTTCTACAACTCCATTTGAGAAAGGACTGTCAATACTGTTTAAAATTTTTCTGTATGTCTTTAAAGTACGTGCTAAATGAAGATTATCACATCCTTTGTACTTCTCTAATAGAGAGAGAAAATTTTCTTTCTTCTTATGTTGAAATAGATAAAGAAAATTTTGATATATCCCATAGGATTCATCTAATTTTTTTGGAATTTTCTTCAATAGGAAATTTACAATTTCTCCTGATGAAATATATTGTTTAAAAAAATAGTCATAGTAACGCTTTTCTGATAGAGAACTAGCTGATTTTTGAAAGAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTATAATAGAAACAGATTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 1 22764-23921 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADRFZ010000017.1 Fusobacterium necrophorum strain DD41 JD55_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 22764 30 100.0 36 .............................. AAAAGATGGAGAGCGAAATATGGAGAAAGATATTAC 22830 30 100.0 36 .............................. TAAATTCATATTCATCTTGTCTTGTAAAAATAATTC 22896 30 100.0 37 .............................. CACAAAGCCAGAATGAAAATTCGATAAAGTTTTACGA 22963 30 100.0 37 .............................. GTGTTTGAAGATACAAAATTCTCCGAAAATCCGATAA 23030 30 100.0 37 .............................. ATACGGCTTATAGGTTCGAATCCTATACTCTCCGCCA 23097 30 100.0 36 .............................. TTCTATAATCATCAAAGTATTTACTACCACTAGTAA 23163 30 100.0 36 .............................. GTGTATTGCATTAAGATAACTTGTTCATTTCCGTCT 23229 30 100.0 36 .............................. TCTTCTTTGATGTCATCTATAAACACAACTCCCTTC 23295 30 100.0 36 .............................. TTTTCAATGTTAAACCTCTGCACGTTCCGTGCGGAA 23361 30 100.0 35 .............................. GTTCATAGAAATGTCAAACCAAAAATCGCATATCA 23426 30 100.0 36 .............................. ACCTGCGTCTATATTTTCAAAAAGCCATTCATTGAA 23492 30 100.0 37 .............................. CTTGTGCACTAGATGTAGCAAGTAAAGGGTTTAATCC 23559 30 100.0 36 .............................. AACAAAAAAGCGAGGAGAGAAGCGGAGAGAGCAAGG 23625 30 100.0 37 .............................. ATAACAACTTTCCTCAAACCGTACTTCTCCAACAATG 23692 30 100.0 38 .............................. ACTTTTTTCATCATATCTCGTCGCAAATTTCATATACC 23760 30 100.0 36 .............................. TTTTAATTGCAGCTTTTTTTCATTTATTTCTAATTC 23826 30 100.0 36 .............................. GAAGCCCTGCTTGATAACGATGTTGAGTATTTGTCA 23892 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== ====================================== ================== 18 30 99.8 36 GACTAAATCCAAGTAGATTGGAATTTTAAC # Left flank : TGAGAAATTTAGATACTGTGAAGAAAAATTATTGAATATTTCATTTTATAATCATCAAGATAAAAAGAAAGAGGAAGGTATAAGAGTATTTCTTATAAGAGATAAAAATAGTGATAATTTTAAATTTGAATCAATATTAGACGATGGCAGTAATAAGATATTTATTTCTAAAAATGGAAAAGAAATTACAATACAATGTTGTGATAAAGTATTAGAAACTTTAATGATAGAAAAAAATACTTTAAAGATAAGTTCAAATGGAAAAATTATTTCTTTAATTCCTCATTATTCTTATTCTATTGATGTAAAGTATTAAAAAAATTTTTTGTCGACCTTTCATAGTGTAAAATTTATGCTAGGTCGACAAGAATAGAAAGGCTTAATATTTATGCTTTTTATAATTGAAGTTGTATTTGAGGCATTATTTTGATATAATTTTATTCATATAGACAATAAGGCTATTATAAATATTTCAAAATATTAGAGTAATAGTAATACTA # Right flank : ATTGAAAATTTTAAAAGAAATAAGGTCTTCTTCAATTAGACTAAATCCCATTTTAATTGTGTTATTCAGATATTTTACTTAGCATTTTTTCGCTATTTTAGCACTTGTTTTTTTATTTTCTAAACTTATAAATCTTCATGCTTTTTTCTTGTATTAAGAATAATGAGAGAATAAGAAGAATTTATTTAGAAGAAGTTTTTCTGGAATACATTTAAAAAATATATTATAGAAAGGATTAAATGGAAGATTTAAAATTAAAGAATATAGAAATAAAAAAGGAGTTGATGTAATTGAATAAAAAGAAGTTCCTAAGTAATGTAATAAAAAGCTTAAATAAACAACCTGTTTTATTTGTCGGGTCAGGAATTCCAAAAAGATATTTTAACTTAGAAAATTGGGAAGAACTTTTGAAAAAATTCATAGCAGAATTTTCTAAGGATGAATTTAAATATACTAAGTATTTATCAAAAGTAAAAGAGAAAGATTATTATGGAAAACAA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GACTAAATCCAAGTAGATTGGAATTTTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.50,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 11850-13663 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADRFZ010000043.1 Fusobacterium necrophorum strain DD41 JD55_42, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 11850 30 100.0 35 .............................. TGGAATGGCTTGGCCAGTACATTAGCCTGACTGGT 11915 30 100.0 35 .............................. GAGCAACTAGATACAATATGTATCTAGCAGAAAAC 11980 30 100.0 35 .............................. AAATTTTGTATAGATTCCTTTCTATTTTGAACCGT 12045 30 100.0 36 .............................. AAAATGTAGCAGTCTCCCCCTTCTGTATTCGCTCCT 12111 30 100.0 35 .............................. TTAACTCCATACTCCCTCCTTTCTTTGTTTCTTTT 12176 30 100.0 37 .............................. TTTACTATAAATATCCTCCGAAGAAAAACTATCGATT 12243 30 100.0 36 .............................. TTGTTCAATCTTAGAAACTAAATTTGCTTTCACATT 12309 30 100.0 36 .............................. AATGATTTTCCATTTTTTTCTTGTGATAGTTCTACC 12375 30 100.0 37 .............................. CTACTAATGCATAATCAAGATCCACAATTCCATTTGG 12442 30 100.0 36 .............................. TCATAATTTTCTGCTTGTGGAGAAGTTTTCCGGTTA 12508 30 100.0 36 .............................. TTTAAAAGAAAAAGACATTTCTAGAATTATTCACGC 12574 30 100.0 37 .............................. AAGAAAAAAGAAGCTTTTAGAAAAAATCTTTTAAATT 12641 30 100.0 36 .............................. TCTTGTTTTAATGTTTTTACTAATAAAGAATAATCA 12707 30 100.0 35 .............................. AGAGGAGTAAAAGAAGCAGCAAAAGGGGCATATGA 12772 30 100.0 36 .............................. TAATAGTTTTACTTCACAAACTTCAAGTAATTCTAA 12838 30 100.0 36 .............................. TAAGAAAAAATGATAAACCTAAGCCGCTTAAAAAAG 12904 30 100.0 37 .............................. TAAAATCTTCCAAAGTAATTTTTTTAGGATTGTTTTC 12971 30 100.0 36 .............................. AAAAACTACAGTTATAAAAGTTATTGACTTATGTTT 13037 30 100.0 37 .............................. GATGATGAAGCTGATAAAAAACAAGCTGTTGAATTTA 13104 30 100.0 35 .............................. AGATTTTGCTTTCAGGATCATCATTCAAATGCTCC 13169 30 100.0 36 .............................. TATTTTTTGTAATTCTAAAATATCTTCAAATGTTTT 13235 30 100.0 35 .............................. GTATTTCCTAAATGATAAAAAGCGATAGGATTTTT 13300 30 100.0 35 .............................. TTTCATCTTACCTCCTTAAATTTCAAAGGATTTTG 13365 30 100.0 37 .............................. CTAATATTTGGAAAAAAAGTATCCGGAGATGAGTATG 13432 30 100.0 38 .............................. TAATACATATTAATATCGACAATGAAGGAGGAATAAAA 13500 30 100.0 36 .............................. TTACTAACCATTTCATTACTATCTCCCTATTTTATA 13566 30 100.0 38 .............................. TATAAAAGAAAATATTAAAAGAAAAATCCTCGTTCAGT 13634 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 28 30 100.0 36 ATTTACATTTCACTCTGTTTCTATTATAAG # Left flank : CATATAGATTCCCTGATCGGTAAAAGCATGAGGATTGTACTTAATATTACTACCTCTTCCTGCACTCTTGTTCAAGGTCACATTTTGTGACCTTGAAAGTTTAGAGACTTCCTCGTCAGTTAATCGGAACATAAAATCTTCATCAAATTTTTCAATATTCCTTTTTACTTGCTGATTAAAAGCCTTTGTTTCATATCCATAGATTTCGGCTAATTCAAAGTCAAGCATGACCTTTTGTCCCCTAATAATATAAATCTTTTTCTCAAGGGATTCCTGGCTTACAATCATCATTTCATCTTTTTTATCCATTTCTTTATCCTCTTATTCAAAGTTCCAAACAGTTCATTTCATAGACTATATTGTATCCTAAATGTAATATCATTCATCATAAAACTTTTGAAAAATTAAAAACCTTATAAGTATCCCTATCAAACCACAAGACCACTCTGTTTCTATTATAAGTTTTTCTGATTCTGACAATACTTCTCAATACTAAAAAT # Right flank : GCCGCATAAGATAAAGTCTTTTATTTTAGCTGATTTTCACTCCCAAATTTGTCGACCTCTTGTAATTGTATCATTTTTTATTGATTTCAACAAATAAAAAATGTCAAAAATCATCTCTAGTCCTTTATTAGAAGTAGTTTGTCGACCTCTTAGGAAATTTACATTATTGGGGGTCGACAAGCAAAAAAATACCCTCATATTATTTCATTTCAATATACTTTTTTATCCTTAACTCTTAAAAATGTTTTTAATGTTTTTCTTTTGGTGATAACTTAAAACATTTCTAGATGCATACAAAGCCTATTACAAATGAAACTCCTTTATTTTTTGATAAGAATTTATTGTTATCTTTTTCTCTATTTTCACTCCTTTAAGTAAGGTAAGACTCTACAGTCAAAGTATATTTCATCAACTCTTCATGCTGACGAATTTTTTCCTCTTTTGAAATACTTTCTTCTCCCCTACCGTTTCCGGTCTGATATGTAAAATCAATTGCACTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTTCACTCTGTTTCTATTATAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //