Array 1 125484-125780 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOLK01000011.1 Haloferax elongans ATCC BAA-1513 contig_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 125484 30 100.0 37 .............................. AATCTTTGAGTTAGACGGCATTGCCGGTGACTTGATT 125551 30 100.0 39 .............................. CCACTGGTGCGTGGGTGACCGATGGCATCGTTACCGACA 125620 30 100.0 34 .............................. TGCGATGACCCCCCAATCCAGGAGCGAGCACCTT 125684 30 100.0 37 .............................. ATCGGTACGTCGATGCCCATAACGAGGTCTCGTGCGA 125751 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 5 30 100.0 37 GTTACAGACGAACCCTAGTTGGGTTGAAGC # Left flank : CAGTCCCGAAAACCCGAGTGTCTACATGCTTTTGCTCGGCGTGTTTCTCTTCGCACAGGGTGCCGCGATGCTCCTCGCTGTCATCGTGTTAGGGGCGCTCGTCTTGGATATCCACGAGTTGCAGAAGACCGACGACTCGTGGCACCCCCACTGGGCGTGGGTCGTCCCCGGGGTCGTCAATATCGCAGGGCCGCTTTTCTCCCCGGCCTTCGCCGTGTCCCTGCCGCTGTTGACGTTCTATCTCTACCGGCGCGGGAAGCGAGTCGGTGCGCCGAGTTTCTGACCGGGTGCTTTCGACTGATGACACTCTGACGAACTGTACTCGGTGATACGACAGCGACTCGGCCGTGGTGGGCGTTTGCGGACACCCGTCTTGGACCTGTTCGGGTGCTCTCCAAACTACAGTCGACCCCCCGGGGCTGAGAGGTGTACTGAGGGTCGACGGAAACTGATGAGTGAGAGCGGTGGATATAGGACTCTACGCCTACGAATTGGATATG # Right flank : CTACAACGGCTCCAATGCAGTCGTTGACGTGTCGTCGTTACAGACGACCTGCATCGATTGAAATCTAGTCTGCTCGATGCAACAGATGCACGTACCGCACTAGCGACCGGTGCACCCGCCGTTCGAACACCTGTTCGACCTCCCAGCCAGCGTCTTCGGCTTCATCGACCCACGACCTATCGGCGACCATCACGCACTGCGGCGCGACCCGGTGAACCTCCGCGAGTGCTCCACCGACCAAATCCGCGAGCGAGTGCTGAGCAATCTTCGACTGCCGACCATACGGGGCGTCGAAGACGACGCCGTCCATCGAATCGTCGCAGAGTGGGAGTGCCGTCGCATCGCCGCGAATGACCGCACCGGAGCCGACGTAGTGGTCCACGTTCACCTGCGCACCGCGGGCCATCTTCGCCTGTGCGTCGACGCCGACCACGTCGGCACCGACTAACCCGGCTTCGAGGAGGACGCCGCCGGTGCCGCACATCGGGTCCAAAATCCGA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCCTAGTTGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 25654-24083 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOLK01000019.1 Haloferax elongans ATCC BAA-1513 contig_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 25653 30 96.7 37 .............................A CCGTCGAACTCGTCCATGACGACGATGAATTTGAGGT 25586 30 96.7 40 .............................A CCGCCAGATACCTATTACGACGAAGCAATAGACATCTATC 25516 30 96.7 39 .............................A AAAGCCCAACAGCCCGTTGCAGACGGGATGCAACTCGCC 25447 30 96.7 35 .............................A ACAGTGTGTCCGGCTCAGCAAACGAGCGCATCACT 25382 30 100.0 34 .............................. CCAATCGACAGCGCCGCTGCCGACGGACCAATCA 25318 30 100.0 38 .............................. GCTGAGAACGTGGTGTCGATAAAGAACGTCGAAATGCA 25250 30 100.0 40 .............................. AGGCCGCAGACGAGGACGATGACGGCGGGGCACTCCTCGG 25180 30 100.0 38 .............................. GTCATGTGCCCCGGCCGACCGGGCGGCCTCCAGGTGGC 25112 30 100.0 36 .............................. TGGATGACGTCGACCTCACGCACATCGGCCCCGTTG 25046 30 100.0 36 .............................. AACTGTATAGCCGGTGAACCGCTTCGACAACTCGAC 24980 30 100.0 36 .............................. CAACAACAGAGAGATTGGTCAGTGAATCCCCAGTAA 24914 30 100.0 37 .............................. AGTCACCGTCGCACCTGCAAACCCGTCGACGACAGAC 24847 30 100.0 33 .............................. CGTAGTCGTATTCCGAAGCCACCTCGTCGAGCA 24784 30 100.0 40 .............................. CACCGAGTGGGGTCGAGAGCGCGCCACCGATAGGCGTCCC 24714 30 100.0 38 .............................. CTCCAGGGCGGTGGCCCCACCGTCAACGGGATGTCCGC 24646 30 100.0 41 .............................. TTCCATGAGGTGTTTCGTGGATATCTCGCGTGTCGCTGCTA 24575 30 100.0 37 .............................. CAGACGACGAAAGAAGGCATGCACGAAGGCTTCTTCC 24508 30 100.0 36 .............................. GTCGAGTAGTATTGCCATGTTTTAGTCCCTCGTGCG 24442 30 100.0 37 .............................. CAACTCTTCGATGGTCTCGGTCGCCTCGGCGAGCGTC 24375 30 100.0 35 .............................. TTGCTCGATACGCCCGATATCGGGGACATTCCCCC 24310 30 100.0 34 .............................. CACTTCACGGGCTCGACCGAGGAGTTCGGGTACG 24246 30 100.0 39 .............................. CTGCGGTACATCCGCCGTGACGAGCACACGATTCGGCTG 24177 30 100.0 35 .............................. ATGCCGATAAACAACGCAGTGAACAGGGCCAACAG 24112 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================= ================== 24 30 99.5 37 GTTACAGACGAACCCTAGTTGGGTTGAAGC # Left flank : CGCTAGAGCAGACAGTTAACCACCCGCAATTGAACCGGAAGGTGAGCTACCAGTATCTCCTTCGAATCGAGGCCTACAAACTGAAAAAGCATCTCCTCACTGGAGAGGAGTATGTCCCATTCAAGCGGTGGTGGTGACTGTGGTGTATCTCATCGTTGTGTACGACATGCGAGCAGACCGAACACGATTGATGCTGAATTTTCTCCGGAAGTATCTCACTCATGTGCAAAACTCGGTCTTCGAGGGCGAGGTTACCGAAGGTGATTTAGAAACGATTCGGAATCATACTGAATCCCTGCTGAACCCAGAGGAGTCGGTGATTATCTATCGCGTTGGGTCTGCTCAGTATGTCGACCGAACTGTTATCGGAGACGACCCAACTGACGACGCGCGGTTTCTGTAACTTCGACCCCCCGGGGGTTTGGGGGGTATTGGGGGTCGACGGAAACACTTGAGTGGGAACAGGACGTAGAAGGGCTGTGGTGGCCAAATCGGCCATG # Right flank : AACACTCACGCACCGACCAACACGAGTTCCTTCGATAGAGACAGCCGAACCCGCTACACCCGGTCAGAGAAGAACGCAGCCAGCTCTCGTGTCGCACGCTGCTCGCGTTCGCGGCGTTCGTCGTGCGTGATTTCTTCGACACCCTCGGGAACGGCCCTGTCGAACTGGTCGTAGTAGCCCGCTGGAACGACCCAGTCGTTGTAGTAGTTCGGTCGCTGGCGCTCGATAATCGACCGCGCGACGCGTGCTCCGTCACCGGCGTTCACGAGCGCCTGATGATATGTTTCGGTGATTCGACCTGCGGCGTAGACCCCGTCGACGGTGGTCTCGCCGTCGTCGTCGGTCACGACCACCTCGACATCGCCCGGGTGTTCCTCTTGTACAGTCTCGACACCCAGTGGGGAGAGGTAGTCAGTCTCGGCCCACGATGTCGCGAGAACGTAGCGAACGTCGAACACCGCATCTCGGCTGTGAACGCGAAATCCGTTACCTGAGGGGTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCCTAGTTGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.50,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 38911-37227 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOLK01000019.1 Haloferax elongans ATCC BAA-1513 contig_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 38910 30 100.0 38 .............................. TACCGTGGAAAACGCCGGGACGATTTCGAATCAGGGCA 38842 30 100.0 33 .............................. TGTCCGAACTGCGGCTCTCCGGCGACGCCCGCT 38779 30 100.0 36 .............................. CTCGACGAAGGAGTCAAAGTCGACATCGCCCTGGAA 38713 30 100.0 38 .............................. CCGGTCACGTCCGAACTCGGGGCCGACGCCTTCGAGCG 38645 30 100.0 35 .............................. AACGGGGCGCGCTATCTCCCGGCAGTCCACATCGA 38580 30 100.0 34 .............................. AGTTTGACAGACCGCCACTGTGGGAATGGACCGT 38516 30 100.0 36 .............................. CAAATCGTCAGCGCGCAGTCCCCCACGTCCACCACG 38450 30 100.0 38 .............................. AAAAGACGAGAACGTATTCGTCCGCGTTTCTGTTGACG 38382 30 100.0 38 .............................. GCGCCGAAGTGACTTTTCGGCGTGCTTCACCGTTACTT 38314 30 100.0 35 .............................. TGGCTTAAACCGGCGTCTTCGTCGGGATATCACAA 38249 30 100.0 38 .............................. CACAGGTCCGGGTCGTCTTCGACGACGACCATGGGCTC 38181 30 100.0 37 .............................. CTTTGAGGCTAACCTGTTGAGCATCGCCATCCAATTC 38114 30 100.0 38 .............................. GCCAGTGCGGCTGTGACTACGCGATTCGGAAGGGCGCG 38046 30 100.0 34 .............................. GTCTACAAGGCGCTCGCCGAGGTCGACATCGTCG 37982 30 100.0 36 .............................. CGCATTTGTTTTCGCCCGGTTGTGGAACTACTAATT 37916 30 100.0 35 .............................. TCGGACCTCACCGACAACATCCCCGAGACGGTGAC 37851 30 100.0 37 .............................. AGGATGCTGGGCATTTGAGTTCTTGACCACCGACCAC 37784 30 100.0 36 .............................. CCGAAGTTCGCCCCGCTCACGCGGTTGAGAACCTTC 37718 30 100.0 37 .............................. CGCAAGGACGTCGACTTCGTCGCGAAGGACGACGCCG 37651 30 100.0 35 .............................. GAGAATCAAGTCTGCCGCTTGTTCGGCCAGTTCGT 37586 30 100.0 37 .............................. GTCCACCTTCTCGCGAGCGGCCCCGCCGTCGCCGCCC 37519 30 100.0 36 .............................. CGCACCCGATGCCGAGGTGGAAGAATGACTGAAGCT 37453 30 100.0 37 .............................. CAGGAACCACTCGGGTGGGGGTCGCTGACGCTCGACT 37386 30 100.0 35 .............................. GACTTCGACATCGAGATCGACGACCGAATCAACGA 37321 30 100.0 35 .............................. ACGGTATCGGACTCTCGCGGCACCCACAGACAGTT 37256 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 26 30 100.0 36 GTTACAGACGAACCCTAGTTGGGTTGAAGC # Left flank : ATCGACAGCGGCAGGCCGGGGATGGGGATGCTCCCGCGTTTCTCGGAGAGCGCACCGGTCACCAACCACGAGAATCCGTTTGCGTCATACTCGGGTTTTCGCTCCGCAAACAGGGCTTCGAGTCCAGCAAACGTCAGCCGAACCCCGAGTTCGATCCAGTAGACAGTCAGGAGCGCGACGAGCGACCAGTCAAGGGCGACGACACCAACCAGTGGGACCGCATTGAGCGCCGCCAACGCGATGAGGCGGGCCCGTCGCTTCTCGCCGTCGGTGAACTGCATTGGAGGTTGGGTTGGCTTCTGGCTCAGGGCAGTTAGGTTGACGGATTTTTGTCGTGTGTGATCGACTGCGTTCCTGCTGGGGTTAGCAGGGACCGACGCCCGTGAAAAACGTCTGCGCTCTCTGTCGACCCCCCGGGGGTTTGGGGGTGATTGGGGGTCGACGGAAACACTTGAGTGGGAACGGGGTGTAGGAAGGCTGTGGTGGCCATATTGGCCATG # Right flank : TCAGTCACCGACGACGGGTCGGGCCTGAGCGGTTGCTACAGACGAACCCTTGTAAATGAGCCAAGTTATCTGGATTGCGTAGAATATCCCCATATTGCGTCACTGGATTCGACGGAGACGACCACTCCGTTGGCGGTGTCCAGTCGAGTGCATCGAGTTTGACGACAACTGACAGTACGGGCGGCTCAAAGAACTAAAGAAGCACTGTAGGCTGACGTGGGAGTTCCCCTCGAAGGTGAGACGAAAATTAGGGTAGGCCCCGAAGTAAGCGCCGAGCGTGGGTGATGTCGTAGAATGTCAGATTCACACCCACCCTAACGGAGGAACCTTCTCCCTTGATTCAAACGGGGTGGCTTGCAGAGTCGGTCCTACAACTTTGACTGAACGTTGCAGGATTGACCCTACAACAGTAACCAATAGTTGTAGATCCCACCAAACAACTTTGATGAAAAGTTGTAGGGGCAATCCTACAAGTTATACTGCTTGGTGAGAGAGTACGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCCTAGTTGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.50,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 25161-24421 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOLK01000026.1 Haloferax elongans ATCC BAA-1513 contig_26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 25160 30 100.0 33 .............................. GAACTGGTCCACAGTCGGACCCCGGTCACCGTC 25097 30 100.0 35 .............................. TTGGCTGCGTCTGGTTTCTCCCGTATCATCCAGAC 25032 30 100.0 33 .............................. CATCGGGCAGGGTGACGGAGGTGGTTCCGAATC 24969 30 100.0 37 .............................. AATCTCATTGACCGACTCGTTCCACGACTTGAGGAGG 24902 30 100.0 33 .............................. AACGGTGTGTTTGGACTCGGTGAGTTCGACGCA 24839 30 100.0 36 .............................. CGTATGACCGCGTCGAACTGCGCGGGCGCGAGCGTG 24773 30 100.0 35 .............................. CTCAAACGTCTCCTGCGTCCTGTCGTGGCTTTCTA 24708 30 100.0 35 .............................. GTCCACGGGGCGAGCGAGCGCGACCGGTATCAGTA 24643 30 100.0 34 .............................. GCATGACTGCCGAGAGAGCGTATCCCGCAGCGAC 24579 30 100.0 37 .............................. AAGAGATTCGAGTCGGTCGATAACGTCGTCTGAGGTC 24512 30 100.0 32 .............................. ACGCTGCTCGCGACGGTCGGCTGCTTCGCCGT 24450 30 73.3 0 .............T..T..G.A..A.TT.A | ========== ====== ====== ====== ============================== ===================================== ================== 12 30 97.8 35 GTTACAGACGAACCCTAGTTGGGTTGAAGC # Left flank : AAATTCATCGACCAGATGCTTGCGGAGTACACGTTGCGTACGACCCCGGTCTCTGCGTCTGAGGTTGATGATGACACAGAGCGGGTCGATTTCGACGCGTTGTCGACAGACGCGAAAGCTGCGTTCAAAGACGCACTCACTGACGGACAGCACACGGTTCGCGGAGAGACGCTTCCGCCACAACTCGTGGGACACCGATACGTGCGTTACGAGGGGACGACTCACCATCTCGAAATCGCGTTGTTCGAGATTCCCATCAGGAAATTGTCGGTTGAGAAGGTATCCACGTAGCGGCGTGTCATTTGGGGGCGCATTCGCCGAGCAGTAGGGCCAGTGGCGTGATTCCGAACGTTGTCTGCCTGCCCAACGATTAGTGCTTGTGTGGGTCGCGGATGCAGCGTTCTTTCGACCCCCCGGGGGTTTGGGGGTGATTGGGGGTCGACGGAAACACTTGAGTTCGAACGGTGCGTAGGAGGGCTGTGGTGGCCAAACCGGCCATG # Right flank : CCACCTCGATTGCGCAGCGTATGTGTCAAACCTTATTGGATGCGTACGAAACGTACAACCCAGATGGGTGGGGACACGCTTCGAATCACGGACTTGTCCGCATTGCGTCCGGAGAATTTCAAGCTCCGAAATACGAAATTCCTGATGGACGACAGTCTCCACTACGACGTGCAAACACACGAGTCACGACAGCAACTTCGGCACAGCATCTGGGTCGTGAGAAACGGGGATATCAGACGTGTCTTGAAAGACTTCCCTCGGAATGAGCCAGTACACGACCAGTGCGCATTTTGGATGCACGCAGTTGTCGGCAAGCACTTTTTCCCAGACGCGAATCACCGAACTGCAATTGCACTTCTTCGCCAACTCCTCGTCGAAAACGGCATCAATCCTGGCAAGTGGTCTCCCGAGCGGACGAGGCAGGCACGCGATGAGTCCCACCGAGTCAGAAGGGAAATTGACCCGATTCGACTAGATACACTCTACGTACATGATGAACT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCCTAGTTGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.50,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 51945-51785 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOLK01000005.1 Haloferax elongans ATCC BAA-1513 contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 51944 30 100.0 34 .............................. GTCGAGAACGACGCGATCGAGTTCTCGCCGTCGC 51880 30 100.0 36 .............................. GTGACGTGGCTTACGTTGTGGGCAAGCTGCGGAACA 51814 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 3 30 100.0 36 GTTTCAGACGAACCCTTGTGGGTTTGAAGC # Left flank : GTCTATGGCGCCACGAAACAATTGAGGTAGCTGCAGCAGACCCTGAGGAGCTGCAGAACATTATTCATGAAGATGCCTTCCCTTTCGTGCAGGAGTTAGACCAGGACGAGTTGACCCGGCAAAAAGTTCTTGAATAATATCGGTATCCTCCCCCATCGATACTCTCAATTACCTGTTTAGATTTTTTGCGAAAACTTCCTGTCTAACTCCCAAGCACGCCCACCCGACCCCGAGCGGGGTCGGATAGCCGTGGGTGCGGCTGCTCGCTCGGCTGTCGTCGGCGATTGCGGACACCCTCCCAGAGAAGGTACACCGACCACCGTGTCTGTGGTCGGAATCGATGGTCTGGGCGTGGACGACTGATTGGTGGCAGGGACTGGTGGGCGGAGAGTCTGGGAAGTTCCCGTCGACCTCCGGGGGTTGAGGGGTAATTGGGGGTCGACGGAAACATTGATCAGAATTCAGCGTGTACAAGCCTCCAGCCCCGTGTTTTGACACGT # Right flank : TTCGACCTCCAAGTGATGTCAGCACCATCGACCAAGTATAGACGAACAAGCAATACAGAGATAGTGTGGTGAATCTGGGTACTCGCAGTTTGAATTAGCTGGCCGACAAAACACGAGTATGAAACTGGCTACGTGGAACTGCAATCAGGCATTCCGAAAGAAACAGCAGCAACTCCTCAAGCTTGAGCCGGATCTCGCAGTCGTACCTGAGTGCGAGAACCCAGCGAAGAAAGGTAACTGGGCTGAATTCACGGATTGGCGGTGGACGGGTGACGATCCGCACAAGGGCCTCGGCGTGTTCACCCGAAATGGTATCACAATCTCCAGCACCACGGAGATCACCGAGGCCGACCACGTTCTCCACATTGAAACCAGTGTCGTGGATGTGCTCGCGGTGTGGGCAATGAACGACAAGGACAACCCGCGGCAACGCTACATCGGGCAAGTTCACACCGTCCTCGAAAACCATCCCGAACTGGTCGGTGCGGACACGGTCGTCG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGTTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGTTTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.80,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //