Array 1 558615-563346 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN879430.1 Herbinix luporum strain SD1D chromosome I, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 558615 32 100.0 36 ................................ TAAATGCCCTCATAAAAGGCATGTTTCTATATCGTC 558683 32 100.0 34 ................................ CACAATTCAATCTTGCACTCGATACATATACCGT 558749 32 100.0 35 ................................ TAGGTCAAACCCATCTGTATCATTCCAATACCATT 558816 32 100.0 36 ................................ ATCTAGTATTGGCTCACCTTGTTTGTCTCTTGCTAC 558884 32 100.0 34 ................................ ATGTGCTGAAGCAGCTTACCTATCTCTGTCTCAT 558950 32 100.0 37 ................................ TAGATGAGATTGTTGCACTTTTACCCATTTGTATACC 559019 32 100.0 35 ................................ CAAAACATTTTATAATATAGTTTTATTGCAGGACA 559086 32 100.0 37 ................................ TGGCATTACGCAAACTATTAACAATGTTAAGGACACT 559155 32 100.0 34 ................................ TTCCATGCTATCCCTCCCAATCCATTCTCTGCCC 559221 32 100.0 35 ................................ TATGGTTAAATGAAATACCAAGAGTACTAAGCAAG 559288 32 100.0 35 ................................ CAAATATCAAAACAAGTGAAATCATTACATTTAAT 559355 32 100.0 37 ................................ CCCAGTTTTTTCATAACGTTTTATTGCGTGTAATATG 559424 32 100.0 35 ................................ CAGATATCTTCATGGACTGAAACCGACCGCAAATT 559491 32 100.0 35 ................................ TAGGTCCGCAGATAACACACAGCAGTTTGATGTTA 559558 32 100.0 36 ................................ ATACACTTGGGTTGGGTATTAAATATCAGGTTAAAG 559626 32 100.0 37 ................................ ATACACTTGGGTTGGGTATTAAATATCAGGTTAAAGC 559695 32 100.0 34 ................................ AAGATATAAAAGAAAAAACCACTGTTAATGCAAG 559761 32 100.0 37 ................................ AAGCAAGTTATATAATATAGGTGAATACCGTTTTAAT 559830 32 100.0 33 ................................ ATTATTGCTTCTTTACCCACAGCACCAAACCAG 559895 32 100.0 36 ................................ TAGCGGCACAGGCGGTTATAGAAAAAGAACTAAAAG 559963 32 100.0 34 ................................ TTTGATCAAGCCGCCTGTCGTCTCAAAGGTTTTT 560029 32 100.0 35 ................................ CTAGTCGATAGCGAAGTCTTTTTCTGTTGCTTATC 560096 32 100.0 35 ................................ TGTCATCCGCATTATCCATGTGATATAGTAAAAAC 560163 32 100.0 33 ................................ TAAGTATTCTTTCTCAGCCTGTTCTTCTTGCGT 560228 32 100.0 36 ................................ TTTTGTTTGTTGGTAGGTTTCATCTTTTCGGTCATG 560296 32 100.0 37 ................................ TGTGATTGAGAACACACGTCAACCTCAAACCCGCCAG 560365 32 100.0 33 ................................ AATCGGTGCAACACCAGATGGCGGTGTTGTCAC 560430 32 100.0 36 ................................ ATATGTTGCAGGATATTTTTGAAGGTAATCTTTATA 560498 32 100.0 34 ................................ CACAGGCGAATTAGCTATACACCCAGGAAGTATG 560564 32 100.0 35 ................................ TAGGTCCGCAGATAACACACAGCAGTTTGATGTTA 560631 32 100.0 37 ................................ AAGGTGGGGTGACAGCTTACGCCACTGGGGGACTAGG 560700 32 100.0 38 ................................ ATCATACCGCCAATAAATTGTTCCATAGAGGTTGCCCC 560770 32 100.0 34 ................................ CGCCTTGTCCACACCTGCTGTTTCAATTCCAACA 560836 32 100.0 36 ................................ AAAATCTGTCAAAATGTCACCAGGCATCATAATGCG 560904 32 100.0 36 ................................ TAATTACTCATTTAAGGTGGATGATAACCTGCATAA 560972 32 100.0 35 ................................ TGCAGTTTTTCAGCAACCAACTGAAAAAATGGGCT 561039 32 100.0 35 ................................ CAGGTTAGCAGTGATGATGTAAAAATATCTATCGA 561106 32 100.0 35 ................................ AGTGAACACGCTTTTGGTAACAGATTTTACCTAGA 561173 32 100.0 38 ................................ AAAAATTTTGTATATTTTACATTAGATTAATTGACAAC 561243 32 100.0 36 ................................ CTGACGCCTTTATAAAAACAGAATAAAAAAGAGACC 561311 32 100.0 36 ................................ ATCTCTTGGCAAAACCTATAAGAACTCAGTGTACTG 561379 32 100.0 36 ................................ TAAAGGCATTAGCTTTGTACGTGGTATTTTACAATC 561447 32 100.0 34 ................................ CTCTGCCTTGCCTGCCAGTATAAACAATTAAACC 561513 32 100.0 35 ................................ CCGGGGGTCTATTCGCCTGGGTCTAGTCAATCTCC 561580 32 100.0 35 ................................ TTTTTTAACTTAATTATAGGTTTTATTGTTTTTTT 561647 32 100.0 35 ................................ ATATTTTTAGTATTTAAGCGTGCACCTGAGATTAT 561714 32 100.0 35 ................................ AGTTAGTTGACTCCGGTAAATTTACGGATAAAGGT 561781 32 100.0 33 ................................ ATGAGTGTAAGCAGTTTTTCTTGGGATAGTCCG 561846 32 100.0 38 ................................ AAAAAAAGCTTATGCAAGCGAAAAAACAGCGTATGATG 561916 32 100.0 34 ................................ TAGTTGCTTTTGTTGTTCTTCTCTGTAAGCCTTA 561982 32 100.0 35 ................................ ATAATTTTAAAAATTATAAACACAATACCAAAACA 562049 32 100.0 36 ................................ AGAAGTTGGTATTGAAAATATTATAAATGAGATACT 562117 32 100.0 33 ................................ AGCAATACTCATAATGTCAGGCAATAGAGTCAT 562182 32 100.0 35 ................................ AGTATGAAAAAGATGAATATATCAAAATGTTGGCT 562249 32 100.0 35 ................................ TCCTAGTAGTATGGCATTTAAGCAATCAGGAAGTG 562316 32 100.0 36 ................................ AGCCTGTGTCTGTGCTAGCCTTTTAAGGTTTTCGTT 562384 32 100.0 35 ................................ CCGTCAATGCTGCCAGGCAGAGCGTCCAAAGTCGG 562451 32 100.0 35 ................................ CCAAAAATTTAAAGGACATATATAAATTGTAAATA 562518 32 100.0 33 ................................ TCCGCAGATGTCACATGTTAGCGATACGCCTAC 562583 32 100.0 34 ................................ CTGGGTAGCATTACACCGCCGAAGCGGTGCCATC 562649 32 100.0 35 ................................ TATACTGTATATATAATCTAATTAAGTACATGGAT 562716 32 100.0 34 ................................ ACCCCCTTCAATTTGTTAAGTTCCCGCCTGAGTA 562782 32 100.0 34 ................................ TAATTCTTTTTGCCACATCTTTACTTCTTTGTTA 562848 32 100.0 34 ................................ TTTTTTAATTTTAAATGTTTGTTTTGTTTCTGTA 562914 32 100.0 34 ................................ TTGAAATCCTTGTATGTAGTGAGGAGTTCGGTTA 562980 32 100.0 35 ................................ CGCCTTATCCAAAATTAAATCCTGCTCCTCACCAC 563047 32 100.0 35 ................................ CATCTTCTTTTGGTAATCTCTCTGTTACTGGTATC 563114 32 100.0 35 ................................ TCGTGATTACCGGATTGAATAGACAATATTTTATC 563181 32 100.0 35 ................................ TTAGCTATATGCAATAAGAAAAAAGCTGGCTCAGT 563248 32 100.0 35 ................................ TGATGGTGTGTTTAGGTCTAGTTCCGTTTGGAATA 563315 32 81.2 0 ........................T..TTTTA | ========== ====== ====== ====== ================================ ====================================== ================== 71 32 99.7 35 GTCGCACCCTTTACGGGTGCGTGGATTGAAAT # Left flank : AGGTGATTTAAATGAATATCCGCCTTTCTTTTGGAAATAGAGGTGAATATGTTGTATATACTTATTACATATGATATTAATACAACATCATTAAATGGCCAAGCAAGATTAAGAAAAGTTGCAAAAGTATGTATAAATTATGGTCAAAGGGTACAAAATTCAGTATTCGAATGTAAGGTTAATGAGGCTCAGTATCGCGAATTACAACATAAATTGCTAAAGATTATTGATAAAAATGTAGATAGTCTTCGATTTTATCGACTTGGCGAAAACTACGATAAAAAAGTAAAGCATATTGGTGCAAAGCAAACATATAAGGTAGATGACCCTATGATACTATAGTGCGAAGGTGAAGTGAACATAATTTTCTAAGAGGTTTCGCACTAGATATATAATAATTTTAAGCAAAAGTTATACTAGTTTGTCGAAAGATATTTTGAATATTAAAATGAAATAGAGTTATTTAGTTAGTTGTTATTAATTTAGCACAATATCTAGCT # Right flank : AAGTTAATTATATAAAGAATTAACAATAGATGATATTTGAATAACAAACAGTACTATACATTTTACAACTTCACAATCTCATACACCGAACCCCGATTTAAATCGGTCACATTTGCAGAACCATATACCCCCAAATATAATTTAGTTTGATTAATATTCGAACCAAGGCAGGTAAAAAAAGCTGCTTCGTTACCAAAATCATAATCAATATCAATCATATAATATTCATTCATTTGACATTCAGGTGTAAACCAAGTATAAGCCAAAACCCCACGGGGAGGAGATACTGTGTTTGTTCTTCTTGCAAAGTCAGTAAATACACAGCTTCCCATTAAACTTGGAATTTCATTTCCCATATATGCTTGGACTCCTGTAAGGGCTCTTCCTTGAAATTTATCCACTCTAGGGTCCTGATGATAATAGCAGCAAAGTGGATATATACGTTTGGTAGAGATTGTAATTGCTTCATTATAATAAGCTATTATCTTCTGATTCAAATT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTTACGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.80,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //