Array 1 3037-3386 **** Predicted by CRISPRDetect 2.4 *** >NZ_JROF01000059.1 Halopiger salifodinae strain KCY07-B2 Scaffold59, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 3037 30 100.0 37 .............................. TCCTACGACCCGTACCACGAATACTACACTGAGTTCC 3104 29 93.3 33 ..............-......A........ CGCCACGTCCCTCGAGAACCGTCCGATCAGGCT 3166 30 100.0 33 .............................. GTCTGGTTCGCGCCGGTCGCGTACTACAGCGTG 3229 30 96.7 35 ...................T.......... TACCTTTGCCTCCGGGAGCCACGCGACACGCGCCG 3294 30 90.0 31 ...................A.....CG... AATACCGTGACGTTCGAGGGAACGGTAGAGT CC [3318] 3357 30 80.0 0 ........T...T.T....A....C...A. | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 93.3 34 GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Left flank : AGTCAGCGAGGTTCAGGACATGATTGATAGTGGTGGCCACATGCACGAGCATGATCTTGGAACGCTTCAGTTTGGTCCAGATTACGATGGTGAAGTCACTCCAATGGCATGTCTCTATACTGGCGGTGAAGGGAGTGAGGTCTGGGAGAAGTACAACGAAGGCCGGGACGTGACCTATCATGTTGAGCACGGTCAGTGCAGTGTTGATCGTGACTACTGGAATGGCGAATACACCGTAATTCCATCTGAGTGTACGATTGACGCAGTGAAGTATACCCGAGACGCACTCTACAGCCTGTAACGCGTCCGTCCGGCGGCTATTTTTCGTATTGATCTTGAGTGAGTGGTGTGATACTGACCAAGACATCGCTCTTCATGGCAACTTCTCTGGAGAAGGACTCAATCGTCGACCCCCTTGGGTACACAGATTACTCGGGGCCGACGGAAATCGATTTGTGTGAGTAGACTATATTAGCCTTCAGAGCCGGAATTTCGGCATG # Right flank : CATGCTTGATCTGCAGTGCGAGCGCACGTCTCAATTTTGATTCACAAAGGCCATCAAAATTAGCCCCAATTACAGCACCTACATTCTCAGCTAATGTTGGCCGGATCCGGGAGTCTCGATCAGTCGTCTGTGGACTTCCAACTGACCGATAGAACAGTTGTATTCACAGGTCCTCTTTCGCGGCGGCTTCATATGGTAACCGCAGTCACTGAATACCGAAGACTGGATGATAGGGCTGTTCGCGGGCATCCAGAATCAGATAAGTCGAGGCTCCCGCTGTAACCTTGTGTTCCCATGTGCTTGGATCAGTATTGACCTGCGCACCCGGATGCGAAAAAATTTCGTTCACATCAACATCGTCAGTAAGCAAGTTGTCCTGTTCTCGATCAGTGAGGCATGCAACAACATCCTCGTAGCCCTCGATTTCGTTGATCATATGTTCGTTCTCCAACGCGGACATCGAAGCTTTGTCGATGGCAACAGCGAGCTGCTCATCGCCA # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.10,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 11319-13035 **** Predicted by CRISPRDetect 2.4 *** >NZ_JROF01000059.1 Halopiger salifodinae strain KCY07-B2 Scaffold59, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 11319 30 93.3 33 ...................A....C..... AACAGACAAGAGACGATGGGCGACAACCACAGC 11382 30 93.3 35 ...................A....C..... AATGAGCCGACCCCGGTGCGGGCGATCACCAGACC 11447 30 93.3 35 ...................A....C..... TGGACGACGTCGATCCCGTCGTCGAACGTCAGCGT 11512 30 93.3 34 ...................A....C..... CTCGGGCTCGGCATCTTCGGGTCGGACGAATCGG 11576 30 93.3 35 ...................A....C..... ACTTCGTCGCCGCCGTCGGTGACCGAGAGCGAACC 11641 30 93.3 33 ...................A....C..... AGCTGCATGATCGTCGTGACCAGCCAGTGCAGG 11704 30 100.0 37 .............................. ACCCACCGCTCGGTCGAGAAATACACCGAAGGCGTCA 11771 30 96.7 34 .................A............ CTAGAAGCTTTAAGACCTGTCGGGAAGATACCCG 11835 30 100.0 35 .............................. CGGTAGGCGAGGACGTTGGCCTTCGAGAACTCTGA 11900 30 100.0 32 .............................. AGTCGTGATGTCGTCCAGATCGTCGTTGAAGC 11962 30 100.0 34 .............................. GTCTGGTATCACAATGGGCTACGTAGCAAACGTG 12026 30 100.0 36 .............................. CCATGAACACGACCGAAACCAAACTCGAAGACGTCG 12092 30 96.7 35 ..............A............... CCCGCGTGGGTATCGTCCGTTTTCTTGGTGATATG 12157 30 100.0 36 .............................. GCTGCGTACGCCAGGTACGCGCCGACCGTCACCAGC 12223 30 93.3 34 .................A..........T. CGAATCGACGAAATGCGTGAGTTCCGCTTGTCCG 12287 30 100.0 37 .............................. AACGTCGACGCGCTGACGTCGGGCGCGGTCGTGTCGA 12354 30 100.0 35 .............................. TACAACCCGAAGGGTCTCGGCTACGTCAATCGCGG 12419 30 100.0 32 .............................. CAGTTGGTGAGCAGCGACGACCTGTGAGACGA 12481 30 100.0 36 .............................. GGCACTGAGGGAGTCACTGCCGATCTGCAGCAAGAC 12547 30 100.0 35 .............................. CGTCGAACCCGGAACTCGCCGAGCGCATGGCGCGA 12612 30 100.0 36 .............................. AGATTACGGCGACGGGGGTCGAGGAGGCGGGTCTGC 12678 30 100.0 32 .............................. TACCCCAACGGACTCCCTGGCGATCAGGACGG 12740 30 100.0 36 .............................. GGCCGGATGGTGTTGTCTGTCCCGTCTAAGTCCCAC 12806 30 100.0 35 .............................. GCTCGACGCACCGAGACACCCACGACTGATCCCGA 12871 30 100.0 38 .............................. GACGCGAATGAGATCCCCGAAGGCGTGATCTCGCTCGT 12939 30 100.0 37 .............................. ACTGATGGCCTGCCTCGTCAACGGGCTACTGATCTTG 13006 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 27 30 98.0 35 GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Left flank : CAGCGGTGATGGTCGCTAGCTGATCTTCCCGCGGTGAGGAGACGAGCAACTGTCGTTCGTCGCCTTCATCGAGGTCGCCCCAGGGGAACGGATTAGAGAATGTGAATCCGGGCGTTTCCGCTCCATGTTCGTCGTACTCTGTATCACGGAGCGCATCCCAGATCCGTGCTCGAAGACGGCCGTGGTATTCTGGATCGTAGGCAGCATCCATCTCGGCCGTCAAATCGATGATCACTCGCATTTTGTGGCGGATGTTGATAACCTAACGCAGGAAATAAAAATGTAGTGAAACAAGCAAACATCCGAACAGACCTCTCGGCCAGTAGCGTAATTTCATCCACAGGTTCTGTTAGACCACGGATTTCGAATCTATACTGTTCACGCGATCGGCGGTCTTAGTTGTCCGTCAACCCCCCAAGGTTAGCAGGCTATTGAAGGTCGACGGAAATCGATTTGTATGAGTGGACTCTAGGACTGCTCACAGCCGACATTCCGGCATG # Right flank : | # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Alternate repeat : GTTTCAGACGAACCCTTGTAGGGTCGAAGC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.10,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 22-974 **** Predicted by CRISPRDetect 2.4 *** >NZ_JROF01000007.1 Halopiger salifodinae strain KCY07-B2 Scaffold7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 22 30 100.0 36 .............................. GTCGGAATCCCGAGTATCGCCGCCTGCGCCGATCGA 88 30 100.0 37 .............................. CATCGGGGATGGAACGCGCGAACGCGCGGGCGATCGC 155 30 100.0 35 .............................. TCCCACTCGAAGGAGATTTCGCCGTGGATCTGCTC 220 30 100.0 34 .............................. CTGACCGGCGCCGAGATCGACGCGATCGAGGCCG 284 30 100.0 36 .............................. TCCGAGAGAACCGGGTTGTGTTCGGCGTAATCGACG 350 30 96.7 36 .....G........................ GCCCGTCGATCCGTCGGGTTTAACCGGGATCGACGT 416 30 100.0 35 .............................. GAACGACGCACCACCACAACGGACGCCAACGGCCA 481 30 100.0 34 .............................. ATGCTCGGCGCGATGTCGCCCCGCCTGAACGGCC 545 30 100.0 35 .............................. TCGTGGTTCTCGCGGACGAGTTGGTATCGTCCACG 610 30 100.0 36 .............................. CTTGCAGGAGCAGCAGGCACAGCAGCAGCAACGACT 676 30 96.7 37 .................C............ GAACGACGGCCAGGTACTCCGCGATCTCGAGACGGTC 743 30 100.0 36 .............................. GCTCGGCTGCGAGACGACCGCGGGCACCTGCTCCGT 809 30 100.0 40 .............................. AATTCCGAGGGGCTCGGACCCACGTATCGAACGTCGACGC 879 30 100.0 36 .............................. AAGTACATGGAGTGTGTGACTGACACCGTGATCACG 945 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 15 30 99.6 36 GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Left flank : GTCAACGGGCTACTGATCTTGG # Right flank : CGAGAAGGTGACAGACTACGAGATCCGCAACGCGACCGAGGACGGGCAGCCACGCATTAAGCCTCTCGCAGATGGGACGCTTTCGGACGGTCAGACAGTTTCTGTCGACGTGGAAGTCAAACCGCGCGGTGAATACACGGCTGGCGACGCCGGCGAGAACCCGGACACGATCATCGAGGACATTCCCTCACTTGCCCCGAAGCAGATATGCGACCAGGTCGCCCTCTACGCCGTCGAGGAGACGAGAGACGCGATCAGCGACGCCGAGATTAGGTTCCGACCGAATCGGTTCGGTGGTCGCACCCCTCCGCGATCAGTCCAGACCGGCTGCCTGGCGAGGGCCCGTGGCAGGTCCAGAGCATCAACTACAGCGACAGGAAGACGACGGTCGAGTTCGGTAACGGACAGCCCGCAGAGAACCTCATCCAGCAGATCAGCGACCACACAAAGCAGAACAGTGAATGGGTATGAGAACGAGGTTCGGGGTAGTTGGTTAGCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.10,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [16.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //