Array 1 3392-3158 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACEMU010000013.1 Paracoccus sp. S1E-3 71_81296_16115902, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 3391 36 100.0 30 .................................... TATGCCTCCGCCGTTCGCGCGGTTCAGGAA 3325 36 100.0 30 .................................... GATCAACTGCCGCGCTGGAACAAGGCGGGC 3259 36 100.0 30 .................................... GCGGTATCGGCACGGCCATCGGTGACAGTC 3193 36 75.0 0 ..........................GTAAGCTC.C | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 93.8 30 GTTGCCGCTGGACCGCGATTTCTGAATGGCTACACT # Left flank : CATCATCGCCGGGCTTGGCATGGCGCGGGACGTGGACAGCCTCGTCGCGCTGTATATCGCCGGCCTCTGCGGTGTAGGCTACGGTCTGCGCCAGATCATCGAGACGCAGGACCAGGCGGGTGCTTCGGTCGATCGCATCGTGATCTCGGGCGGGGCGGGGCAATTGCCGCTGATCCGGCAGCTGCTGGCCGATGCCGCCGGCCGCCCGGTCGTCGCGGTCAGCGCCGACGAGCCGGTATTGCTCGGCTCGGCCATGCTCGGCGCGCTCGCGGCGGGGGCATTCGCCTCTATGCCCGAGGCGATGGCGCAGATGACGCATAAATCCTCGGTCTACCAGCCGGAACCGGGGGCCGAGACGGTGCATCAACGCCGCTATGACGCCTTCGTCCGCCTGCAACAGCTCGGCCGCAGCCTGCGCGACTGAATTATGCAGGATCCGGGTGCGTCGCCCCTCCGCATGAGGGCGACGCATCCGCACCTGAGCGCGGCGTGGAGCAGGC # Right flank : GGTGAGGACCGTCTGACGCTGAAGGCGGGATGGATGTAGGAGGCTGAAGCTATGGACACCCATAGCTTCAGTTCCCAAGTCGAGGTTCTCTCGGTGACCGATAGTGGTCGGCAGCGTCGCTGGTCGGCTGCCGAGAAGATCCGTATCGTCGAGGAAAGCCTGTCGCGCCCGCGCAGCGTGGCGCTGACGGCGCGGCGTCACGATATCTCTCGCGCGTTGCTGACGCGCTGGCGGAAGGACTATCGCGAGGGCCTTCTCGGAAATGAGCCTGCCCTGACCTTTGCGCCGGTGATGATTGCTGCCGAACCTGTGCCTGTATCGGTATCACCTGCGGCAGAGCTGGAGATCTCCGATGCCGTCACAGTCGCGATCACACTGGTGAATGGCCGGCACCTCGTGGTTCCTGCGGGAATTGACCCGGTCATTCTGGCGCGGCTGCTTCCGGTGCTGGACAGCGCATGATCGCCTTTCCGGCGGGGGCGCGCGTGTGGATTGCAGGC # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCCGCTGGACCGCGATTTCTGAATGGCTACACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTGCCGCTGGACCGCGATCTCTGAACAGCTATGGT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.20,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [38.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,4.5 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 1 4131-3172 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACEMU010000015.1 Paracoccus sp. S1E-3 73_217958_40869292, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 4130 36 100.0 30 .................................... TGCCGCCCGCTCGTCCATGAGCGCCAGCGT 4064 36 100.0 30 .................................... TTGGCTGGCGGCGGCACGGAAATGCGCTAT 3998 36 100.0 31 .................................... TGCACGTCGCGGCGCACGGTCTCGAACGCCC 3931 36 100.0 29 .................................... GCATTCTTCCGTGGGCTTCCAGTCCGGGC 3866 36 100.0 30 .................................... TGCTGGACGCGCGTCAGGTGCCGTTCGATC 3800 36 100.0 29 .................................... TCGCTGCGGTCGCTGAATGAAAAGACATG 3735 36 100.0 30 .................................... TAATCTCGTCGATCCCCGGTTGGATAGCGT 3669 36 100.0 30 .................................... TGGATGCAGCTAGGCATCAATCCGGTCTTG 3603 36 100.0 30 .................................... TGCTGGCTGCGACGAGTGCTGCGCTTGGTA 3537 36 100.0 30 .................................... TTGATTGGGAAGCAACCGCCTGCGCCGTGC 3471 36 100.0 30 .................................... AATATATATAATAAAATGCGCGCAGCGTGA 3405 36 100.0 30 .................................... AGAATGATCGCGCGGGCGTTAGCTGCGCTG 3339 36 100.0 30 .................................... CGGTCGCGTTCGATTTCCATAGTCTTGACC 3273 36 100.0 30 .................................... TATTCTGATCGCTCGGCCGCGGCGTTTCGC 3207 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 15 36 100.0 30 AGTGTAGCCATTCAGAAATCGCGGTCCAGCGGCAAC # Left flank : TGGCCCAAAGCTTCGAGACCCGGCGGCTGGCGCTTGCCCTGCCGGAATCCCCCGCGCCGCTTGTGCTGGCGGGGCTTGGTCGATGAACGCCCCCGCCACCTTTCTCAGCGGATATCGCCTCATGTGGATCCTCGTCATGTTCGACCTGCCGACCGACACCAAACCGCAGCGCAAGGCGGCGGGGGATTTCCGCAACTTCCTGCTGGACGAAGGTTTCGAGCGCAGCCAGTTCTCGATCTACGCGCGTTTCGTGAACGGCAAGGAAGCCTTTGAGGCCCGCATCCGCCGAATCGAGCGGTGCCTGCCCTCACAAGGCGACGTCCAGATCCTGAGCATGACCGACCGTCAGTATCGGGATATCGTCCATTTTTCGGACCAGGGCCGACGACGAGCCCGGGAAAATCCATCGCAACTGGTGCTTTTCTGATGCGATTCGATGATTTTCACCACACCCGCCCTTCTGCTTTCCATAAGTATTTCAATGGATTGTAGAAGGACGA # Right flank : TATGGTAACCATCCGGCGTAGGCCGCGGACGGGTGTCCGTGCTCAGGGAGTGGGCTTGGGTGCTTTGGGCTTGCCGGGCCGCGGGGACCATTTCTTCGCGAGTTGGTCAAAGCGTTCGACGATCCTGTCGATCCTGGCATCTTCGGGATCGAAGGTTGCACCTGACCAGCCGACCATGTCGTCGTGCTGCTCGTGGTCCGGATCTGCGAGGGCTTCGAGGAATTCCTCGTAGCCCGGAGCACCGCCGACATCCTCGGGCGGGCAGGCCCCGCTGGCCTTCAGAAGCCTTGGATAGGTCACGCCCGGGGTGGCCTCGGTGACCCGCTCGATCCGGATGCTGTGGTCCCAGTCATCGCCGAAGTCGTAGACATACTGGATCGTCCTGACGCCGGTATCCTCGAGCACCTTCTGCAGCGTCGCCTTCTTCGCGGGCATCGGGCCGTCGTAGAATCCGTCCGGACCGGGCACGCCCCAGCCCGCCCCCCCGGCCCTGAATTCGT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTGTAGCCATTCAGAAATCGCGGTCCAGCGGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.90,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA //