Array 1 4864-3736 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZKU01000050.1 Salmonella enterica subsp. enterica serovar Bovismorbificans str. Sal680 sal680_contig_50, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4863 29 100.0 32 ............................. TTTAAATAGTGGGGTGATCCCGGTGAAAATCC 4802 29 100.0 32 ............................. CGGGAAGCGCAGCAAAACGCCCGGTCGCAGCG 4741 29 100.0 32 ............................. GTGTCCGCCTGCCTTGATTCATGGATGGAAAA 4680 29 100.0 32 ............................. GGCCGGTTTCCAGAGAATCAGAAGAGTATTTC 4619 29 96.6 32 ............................A TTAACGGAGGTCGCCCCATAAGGGGCGATAAC 4558 29 100.0 32 ............................. GGGCACGCGGAGGTCTACGGCGAATATATTTA 4497 29 100.0 32 ............................. TTATCAGTTGAACCCGATGACGACAGCAGCTA 4436 29 100.0 32 ............................. GCGGCTATGTCGTAACATTCCCGGACATCCCC 4375 29 100.0 32 ............................. GTCTTTTAACGTAGCCTCCAACTGACTGCTTG 4314 29 96.6 32 ............................A AACTGCTGAACAAACGCAGCCGTAATTCTGTC 4253 29 100.0 32 ............................. GCCCGTATATGGATTTAACTTTATCAGCGGCT 4192 29 100.0 32 ............................. TCACTCTTAAATTCCTGAATACGATAGGCTGT 4131 29 100.0 32 ............................. TATGGTCGCTGGGTGTGGTTCATCTTGCCTGT 4070 29 100.0 32 ............................. GTGTTCGTCATCTTAATTGTCAACGTCCCACC 4009 29 100.0 32 ............................. TCTTGGTTTTGGCGCGTCGTTTGTGCACAGTG 3948 29 100.0 32 ............................. ATGATGATGCGATGAGTTTCACCATTAACAGC 3887 29 100.0 32 ............................. GGAACATATCCGGGATTAACCGGAAACCTACG 3826 29 100.0 32 ............................. TTAGACGGTCGGATCGTGGGCAATTATCCGTT 3765 29 100.0 0 ............................. | A [3738] ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CATCTGGACATTGGAATGTACCAGAATTTTTTTGCCACCATGATTTTCGGACGGATAAGCGACTTTTTTCCCAGCAGAAATCTATTTCATCAACTAAAGGGCGTAGCTGTCCATCAATGTCTTTTCTCGCGAGATAAACATCAACACTCTCTTCACCCAGACGGGTAGAAAATTCTCTATCTTTATCCCATAAAAAGTCGCTGGCTTCTCGATCGTAACCGAGATCGTAACGTAATAAATTTTGCGCAGCCACTGAACGTTGGCTAAGGACTTTGCCAAAGGCAACGTCAGAGATCGTCTGCAAGCCTGCTGGCGCAGCAATTTTCTGCTCGTATACGCCGTCAACGAGTGCTCTGGCATTATCCGGCATACGGATCTCACCATGTTGACGCAGCAGCGCCTGTGTACGCCACAGGCAGGCATGATCGGCGTAAACAAAGCCGGTACCTTTTAGCTCTTGCCCCAACCAGCCCTCTTCTGCCTGCTCCTGCCAGTGAGGG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 14549-12996 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZKU01000050.1 Salmonella enterica subsp. enterica serovar Bovismorbificans str. Sal680 sal680_contig_50, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 14548 29 100.0 32 ............................. GCGATCGGTCCCCGTACTGGCGGGTAAATCAG 14487 29 100.0 32 ............................. CGTAATTGGTAGTTCATTAGCTCATTTCATAT 14426 29 100.0 32 ............................. GCATTGATGTAACACTCCTTAACTGCGGCGGC 14365 29 100.0 32 ............................. GAACAGATCGCGCTCGGCGACGCGGCGGTTAT 14304 29 100.0 32 ............................. TGATTTTTTATTACCACGGTGTGCCTTTTGGA 14243 29 100.0 32 ............................. ATCGACGTGTACAAAAATGATGCAATTCGTTT 14182 29 96.6 32 ............................C GTAGAAGACGACGTAACAAACCGCATTTACAA 14121 29 100.0 32 ............................. CTCCGGCGCAACCACTTGCTTAACGTCACTTG 14060 29 100.0 32 ............................. CTATCAATGTGATTGCGTTGTCCTTACCGGCG 13999 29 100.0 32 ............................. ACCGCAGGCGAATTCTGGAACAGGCTGCGGAA 13938 29 100.0 32 ............................. TTTGTTTAAATAACGGAGACATGACCAATGAA 13877 29 100.0 32 ............................. CGCTCTCAATATACGACGCGCCTTTAATTGTT 13816 29 100.0 32 ............................. GAGTGAGCATGGCTAAGACACAAATGCAGTTA 13755 29 100.0 32 ............................. CGAAATGTCGCGGTCGCTGGCTTTAATCCAGC 13694 29 100.0 32 ............................. CGGCGCGAACGAGATGATCCAGCGCGAATCGC 13633 29 100.0 32 ............................. CCGGCAATCTCCGCGCCCTGATAGTCAGCGAA 13572 29 100.0 32 ............................. CCGGATGGACCTTCCTTTTCAGGTCCATATAA 13511 29 100.0 32 ............................. GGAATCGTCTTTTCAATGGGCGCGGGAAATGG 13450 29 100.0 32 ............................. CGAAGGGAAGCTAACGGCTGAAAAAGTCGTAA 13389 29 100.0 32 ............................. CAAGACCGCAAAGAGGCGCTGAATCATGAAAA 13328 29 100.0 32 ............................. GTGAAATTGAGCCGCTTCAAGGGCTTCGCATC 13267 29 100.0 32 ............................. ACGTCGAGATATATCAGTCTAAAAGAAATGTG 13206 29 100.0 32 ............................. GCGAAATTCCCCAGATACCGCGCATCGGCACT 13145 29 96.6 32 ............T................ GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 13084 29 96.6 32 .............T............... CCGGATGAAAACGCCTACCCGGAAGACTACGA 13023 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTTCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTACGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //