Array 1 67080-65313 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMUQ01000004.1 Paenibacillus herberti strain R33 R33_Scf_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 67079 32 100.0 34 ................................ CTTGCACTTTGAGCAATATTTGAGACTTTCGTTG 67013 32 100.0 33 ................................ AGTATTCTGCGCCGTCAGGAACGTCTCTTACCG 66948 32 100.0 34 ................................ TTGTTCTTGGCTGCCTTGCTGGTCATGTTGCCTG 66882 32 100.0 34 ................................ ATCGTTGTGGAGATGGTAGAGTGGCCCAATCTTT 66816 32 100.0 34 ................................ TGCCCTCTATTGCGGCCAATCTGCCTTTTCTCAG 66750 32 100.0 36 ................................ AGGAAGCGTCCGGTCTGCTTGGCGAATGCCATTTCG 66682 32 100.0 35 ................................ TTCTCTACAATCGCCATCGACGGAAGCCGCGCAAC 66615 32 100.0 35 ................................ CGTCGGTCGGCCCGATACAGGGGCCACCAGTGCCG 66548 32 100.0 36 ................................ GTGTCGGCGTCCTTGAATACGTTGAGCGCGTCGAGC 66480 32 100.0 34 ................................ GATCATAGAGCGCATGACATTGTATTGAGCCTTG 66414 32 96.9 34 ...T............................ TGCCTGTCGAAACGCTGCCACTGGACGGATGGAT 66348 32 100.0 34 ................................ TTCCCCGAATAGCTGCAAGTTTGTCCTGAACCGA 66282 32 100.0 34 ................................ AGCATCTACAAGTGATTGAGCAGGATCAACAGTA 66216 32 100.0 34 ................................ TTCCTAATCCAGCTGAGCGGACGGGGTACGGCGT 66150 32 100.0 34 ................................ AAGACTATCCGCTGACCCTTAAAGCGCAAGATGT 66084 31 96.9 36 ....-........................... ACATAATTCGCCAAGGAGGTATATATGACCACTCAA 66017 32 100.0 34 ................................ CCGGCGAGCTGCTTCCACCCCCGCCAGCGTTAAC 65951 32 100.0 35 ................................ ACGGCGATACCTTGATTAGACAACGCATTCTCAAT 65884 32 100.0 35 ................................ ATAGCAAGATCGTGATTGAAATCTTGCAGTCTATG 65817 32 96.9 34 ....................T........... AGGCACAGGCGATCGGAGTACGCCAGTATATCCT 65751 32 100.0 35 ................................ ATCGGTGTCAGCTCAAGGCTGCTTGGATGCTGATC 65684 32 100.0 34 ................................ CTCAATCGCTTGTAGCCATTGATCCTCTTCCATA 65618 32 100.0 35 ................................ CTTTTATGATTGAAATGATTGAAAAGGCTATAAAA 65551 32 100.0 35 ................................ GTCGCGGTAGCGTTGGGCATAAGTGCCGTTTGGTT 65484 32 100.0 38 ................................ TACCTCGGCAGCTTTTATGCCGGGCCTGCTCCCAACAC 65414 32 96.9 34 .........T...................... ATCTCAGTATTTTGGTAGTAAGTCTGGATGCTCT 65348 32 87.5 0 .....................A..C..C..C. | AC,T,A [65319,65324,65326] ========== ====== ====== ====== ================================ ====================================== ================== 27 32 99.1 35 GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAC # Left flank : ACATATATGTTATATTTAAATGTATATAAAACGCATCTCAATTTATATCGATTTCCTGCTAATTTGGTGCTGTTTTTTAATTCTAACGTCACCACGATTCGTTATAAAACCTGATCCCGCACCCTTCTTATGTCACGCTCAGCTAAAGGTGAAAACTTGTGATTTCATGAGTTTGAATGGGAAAATCGAATCATTTCGAGGGAGCGAGGGGTTATAGCGCGAAGCGGAAATGCTCTGGTAGCTGGATGCGTCTACGACCACGCTCGGCGTCAGAGAACTGGCCTATTTATTGCGGATCGGAAGGAATTAGAAGTAGGTCATGTCGAAGTAGAGTGCGAACCCCAAGCTCACATGAAAACCCCGGGAGGTTCGCACTTCAAGCGGGATAAGGGATTTTGGGCATTTCAAGCTTTTTGATCTTGTTAATAAGAGCGGTTTTGTAGAGGTTCGCACTTTTGGGGTAAAAAACCTAGGCAGGACAAGGGCTCTCAGGGCATGCT # Right flank : GCATCGATACTATACCGTGAAGGGCAACGGCCTTTACACGGGATTTTTCATTTCTATATAAGATAAACAAAAGAAACGAACGGGAAGGCGGAGAGAGCCGATCCTTCTGTACGAGCAATACGGCATTACCGTCCTTTTGGACGGTTCGGTATGCGATGGAACTACGAGAGTTAGGCCGTTAAGGCTATCCATTCTAGTAGGAGAAGCAACACGTTCGCCTTTGTAGGCGGATTCCCCCTTATCAGGAAGAAATCAAGGAATCCCACTACAAGAGCGATCGGAAGAAGGACCGGTTCGCGCAGCGAGTATCGCTTTACATTTCTAAGCTCAACTTATATAGAGACACGCACTCGGTCTGCAGGCGGAGAACAGGATCAACCGTCAGCCCCTAGAGCAGGCATGGCGCATGCGCTATAATCAAGTCACAAGGAGAGTTCAAGGAGTGAGCATAGATGAATCAAGGCAGACTGAACCAGGTGCTTTTCGGGCTGGCAGTGGTG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 2644856-2643962 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMUQ01000001.1 Paenibacillus herberti strain R33 R33_Scf_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 2644855 32 100.0 35 ................................ GGCTTGACGTAAAAGGCGTGCTTGTAGCACTTCTT 2644788 32 100.0 34 ................................ CGTCCTCCGGGTTCCGGTAGCGCTCGTTAACCCG 2644722 32 100.0 34 ................................ CAGCTTGCAAACGCGTTACTTGACGCCTTCTAGC 2644656 32 100.0 35 ................................ AGTACTTTTTCGCGGTAGGCGCGGGTGCTGGATGC 2644589 32 100.0 33 ................................ GGCGTTGGAGCCGGAGTGGCACTAGGAGATCCG 2644524 32 100.0 34 ................................ TTCAAAAGAGTCTTGTTGAGGATGGGTTCAAAGA 2644458 32 100.0 33 ................................ TTGCAGCAGCCGTCGCGTGATGATCCTTAAACC 2644393 32 100.0 34 ................................ TTCCGAAAGATCATAGAACGCAGTCCGCCGTGCC 2644327 32 100.0 34 ................................ GTCCCCGCAGCCAGGGTGACCGTACCGCTCACAT 2644261 32 100.0 35 ................................ GCCACATGACAGGATCTCCGTTGGATCTTTGCCTG 2644194 32 100.0 34 ................................ CCCTGTTCATCCTCACCCAAAGCAGACAGTTCTT 2644128 32 100.0 34 ................................ CGGCGCGAGTTGCTTTCCATTCGCAATGGATTGA 2644062 32 90.6 37 .................A..A......A.... TTGTAGTAGGCTGCCAGTTGGTTGGCAGCCTTTTTGT 2643993 32 81.2 0 ..........A.AA...A....T..A...... | ========== ====== ====== ====== ================================ ===================================== ================== 14 32 98.0 34 GTCGCTCCCCGTGCGGGGGCGTGGATTGAAAC # Left flank : AATTCGGTACGGACAGCAAGGAGATCATGGAGATTCTGGCCGGAGATCTGAAAGTACAGCTTCCTGGTAACGAGGAATGGATCATCATTCAGGGCGAGGGCGAGTTTACTGTTCCTGCGAACGCTAAGTTTAAACTTGTTATCAATACGGTTACGGACTACTGCTGCAGTTATATCCAAAAATAATCAGCCAGCTTGGAACTAGAGCTCCTGCTGATTAAAAAGCTTGCCCGTTTTGAAAACGCGGCAGGCTTTTTTGTTGTACGGTTAGTCTGCTTAGTGGAGAGGGAGTGCAACTAAGGATAGAACTCTCAGTCAGGAAAAGGTAAACTAGGTGCGAACCCCAAGCTAACATGAATTTCCTGGGAGGTTCGCACCTCAGTAATAACAAGGGATTTCGCTATTTGAGGCGAAAATAATTTTGATTTTAAAGCTCATATAAAGAGGTTCGCACTTTAGGGGCTCCAAACCTAGGCGCAGCAAGGGTTTTTGAGGTATGCT # Right flank : GAAAAATCGCCGACTTTCAGGCGTTCGGCCTCGGGAGTTGCTACCCTTTAATAAAAGGGCTCCTTTTGGGGAAAGCTTCAAAAACAATAAATTATGAGGTTAGCCTCGCTATAGAAAGGAACTTTAAATGAAAACGTTAGTAATTGTGGTGCATCCAAATCTGGAGCAATCGAAGGTCAATAAAACTTGGGCGGAGCGTCTTAAGCAAGAAGAGGGTATGACGCTCCATCATCTATACGCTCAATACCCGGACTTCAAAATTAACGTGGAAAAAGAGCAACAACTGCTCGTTGAGCATGATCGTATCGTGTTTCAATTTCCTTTTTACTGGTACAGCTCTCCTGCTTTGCTCAAGCAATGGCTGGATGATGTTCTGTCTTACGGCTTCGCCTATGGATCCGCCAGCAGCAAGCTGCAAGGCAAGGAACTGCTGCTTGCGATATCCACGGGTGGTCCGGCGGAAGCCTACGAAAGCAGCGGTCGTAACGGCTATACGATGG # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGCGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGGGCGTGGATAGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.30,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 216644-215013 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMUQ01000002.1 Paenibacillus herberti strain R33 R33_Scf_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 216643 32 100.0 34 ................................ GCTTAGCTGAAGTCCTGGCGCAAAACTGGGGGAA 216577 32 96.9 35 .............T.................. ATGGTGTGCATTCCTCCTGTTGTAATCCCATCTTA 216510 32 100.0 34 ................................ CAGGAGTATAAGTACATCCCCGAGGGCAAACGTG 216444 32 100.0 35 ................................ CCATCTGAGCTTGGTTCTGGCGGTTACTGCTTTCC 216377 32 96.9 34 ...................T............ CGATTTATTGACCGGGAGGGGTTGGGGAAATTCC 216311 32 96.9 35 ...................T............ ACCAGCTCGCCGTCCTCGGTGACGATCTCGACCGG 216244 32 96.9 34 ...................T............ GTATTATAGCTGGCGCGCATATCATCGCTGGCCA 216178 32 96.9 35 ...................T............ TTTTGGGCCGCCGCGCTGGCTATATTCGGACGTCT 216111 32 96.9 34 ...................T............ TTGCGCCATCCAATCGGAATAAAACAAGGACGGC 216045 32 96.9 35 ...................T............ TCGACATGATCCTTCACGGCGATCGTGCCATCAAT 215978 32 96.9 35 ...................T............ TGAAATGCCGACCGAAGGCAGCGCGAATAACTGAG 215911 32 96.9 34 ...................T............ TCGTGTGATGTTTGACCTGACCGCCTAGCGTTTG 215845 32 96.9 35 ...................T............ AGCACAATCCTTGCATTAACGTGAAGGCAGTAATC 215778 32 96.9 35 ...................T............ ATGGCAATCTGTTCTTGCTGCGCTTCGATTTCCTC 215711 32 96.9 34 ..T............................. CTGCACTCTTATCGGCTTGGGTATTGCGTTCCTT 215645 32 100.0 35 ................................ TACTACCTCGGGAGACACCGAGAATAAAGAATCCA 215578 32 100.0 34 ................................ CTGGCTTCGGCTACGAGTCGCATGGTCTCTGCGA 215512 32 100.0 34 ................................ TAGCATCCTCATGCCGATGTCAACGATTTGATAA 215446 32 100.0 36 ................................ ACCGTCGTTGGATATGGATTATCTTCTGGGGACACT 215378 32 100.0 36 ................................ CCTGCTAAGGGAGTTGTGCTTCAAGGAGTTGGTACC 215310 32 100.0 34 ................................ CGCTCTCATTACCAATAAATTTTTCCCGGCTGCC 215244 32 100.0 36 ................................ CGTAAATACATCCATAACGCGCCCGGCCAGAACCAA 215176 32 100.0 33 ................................ AAGGAGTATCGATCCATGCGCAAAGCAAAAATC 215111 32 100.0 35 ................................ CGTCCGGACTGGAGTTGTGCGATCGACAGCCCAAA 215044 32 96.9 0 ...............................T | ========== ====== ====== ====== ================================ ==================================== ================== 25 32 98.4 35 GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAC # Left flank : GCGGACAAGAACGAATGTCAGATGCTGATGCTCGTGTAGCGAGCCGTTGACTGGAAGCAAGCAAATCCCTCCGTTCTCATGGATGCTCGTTTCTGAATGTATATGACAGGCCTAGCTTGGCTGATTCCGGGGTTGGGCAGCTATATGTTAAGCTACTGAAATAATCTAATTAAAGGTTAATGTGGTGAATGGATTGGGGGGCTTGGCTGGAGGGACACCAAGCGGTACCCGTCTTGTCGAGTAAAAGAAATCGCTGCGAGCAGCGCCATCTGGATAAGGATGTAGTGGCAGAAAGAAGAGTGGACAGGGGTTTAATGGAGCGATTAAACTAATTGCGAACCCCAAGCTCACATGAAATCCCTGGGAGGTTCGTACATTTGGCGTAGCAAGGATTTGAGGGGATTTTGCTTTGAAATGAGCTCGTGTGACAGGCCCTATTTAAGAGGTTCGCACTTTTGAGGCCGAAAACCCAGGCGCAGCAAGGGCTTTTCGGGTATGCT # Right flank : TGGTCCGGTGCTGCAGAACTAGAAGACCCTTTTCACCGAGCCTGACGAGCAGGATGCTCTGGCGCGGGGGGAAGTGCAGATGATTGCGCCCGCTTTCTCCAATTTGTCCAGCCGGATGCCGGAGTGGAGCGTGATGGATTTGCCGTTCACTTTTCGTAATGAAGATGCCGTTGAGGAGGCGTTCAGCGGTGAAGTGGGCAGCCTGCTGTTCAAGCGGCTTCAACAGCGCGACATGATCGGGATGGCTTTCTGGGGCAACGGTTTTAAGCAGATGACATCGAGCGAGAAGCCGCTGCTGCTGCCGCAGGATTTCCGCGGTCTCAAATTCCGTGTAATGCCGGGGCCGATCGTAGCTGCCCAGTTCCGCGAGATGGGGGCATCAACCACAGATATTCAGTTCAACAGCGTGTACAAGGCCTTCGAGAGCGGAACTGTGGACTCTGGTGAAAACACGATCACGAATATTTACAGCAAAAAATTTTACCAGGTGCAGAAGTATA # Questionable array : NO Score: 8.91 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.73, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAC # Alternate repeat : GTCGCTCCCCGTGCGGGAGTGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //