Array 1 1450-515 **** Predicted by CRISPRDetect 2.4 *** >NZ_PXKU01000044.1 Klebsiella pneumoniae strain CRE31 NODE_44_length_16602_cov_5.53411, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1449 29 93.1 32 ............TG............... TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 1388 29 93.1 32 ............TG............... TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 1327 29 100.0 32 ............................. TTACCAATGGGGAAAAATCTTCATTTGTAAAT 1266 29 100.0 25 ............................. AACATCAGTGGAAATCCACTGCGGC Deletion [1213] 1212 29 96.6 32 ......T...................... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 1151 29 93.1 32 ............TG............... CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 1090 29 100.0 32 ............................. TGTGTGTTGGCGTTCGTTAAATATTGTTAGTA 1029 29 100.0 32 ............................. CAGGTTATACTGGCAAAACGTCGATGGCTCTC 968 28 93.1 32 .....-.......T............... TAAATCAGCAAATATTGTTGTCTACCGTGTCG 908 29 93.1 32 ............TC............... AGCAAATCGAAAATCCGGCTGTTTGAAAAATG 847 29 100.0 32 ............................. TGAGGCTGCTGACGGAGAAATGGGACCTGTTC C [842] 785 29 96.6 32 ..............C.............. CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 724 29 93.1 31 .............G.A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 664 29 93.1 32 ...C......................T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 603 29 96.6 32 .............T............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 542 28 89.7 0 ..........A............-....A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 95.7 32 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : CATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGGAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAACTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAAC # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 97867-93939 **** Predicted by CRISPRDetect 2.4 *** >NZ_PXKU01000011.1 Klebsiella pneumoniae strain CRE31 NODE_11_length_168204_cov_62.8541, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 97866 29 100.0 30 ............................. CTCACGCTGATACCTCGGAAAAAGACGGGC 97807 29 96.6 32 .G........................... GCGGGCTGGGTTTTGTCGACTCTGCCGATCCG 97746 29 100.0 32 ............................. TAATATTGATAAATTCGATGAAGTAACCGGAA 97685 29 96.6 32 ............................A TCGAAGTACCAGCGCCGCACCGTGTTTTTTGC 97624 29 100.0 32 ............................. GTGGCCGGTGCTGCCAGTACGGTTACCGAAGT 97563 29 100.0 32 ............................. CATCCACGCTTCTGGCCACCAGGCAGATAATC 97502 29 100.0 32 ............................. GTGCTCCTCTTCCAGATACTGGGCCAGGAGCT 97441 29 100.0 32 ............................. TACAGGACGACAGCATCCTGGAACATTTCGAC 97380 29 100.0 32 ............................. CTCTGCGTGTGCGCCTCCGCTACGAGGTGACG 97319 29 100.0 32 ............................. TGAATATTCATTTACTAAATTAGAGACAATTC 97258 29 100.0 32 ............................. CGGATTAAACGTAAGGCCGCGCGCTGGCGTAA 97197 29 100.0 32 ............................. GTGGTTTGTTACCGTGTTGTGTGGCAAAAAGC 97136 29 96.6 32 A............................ GAACGGAGGAATATAAGAACAAAAGCCCGCAG 97075 29 100.0 32 ............................. TAAACCGCTGGCGTGGTCAGTTGCGTGGCGGT 97014 29 100.0 32 ............................. GGCGCCGGCCTGATCACTATCGGGTAACGGTG 96953 29 100.0 32 ............................. GGCCTGAACCAGAGCATGATCTACACCTGGAA 96892 29 100.0 32 ............................. ATTGGGTAGAGCAGGCGAACGGATGTCTTTTT 96831 29 100.0 32 ............................. TTTTCACGGTCGAAGTTGTGCATGCTTTCTGC 96770 29 100.0 32 ............................. TCGACGCCCCGGTGTGGGAAGACTTTGGCACC 96709 29 100.0 32 ............................. CAGCGCATACGGGTTAAACCGGATCACCTCTT 96648 29 100.0 32 ............................. ACATAGCGCCCGATACGCAGCGCCAGCGGGTA 96587 29 100.0 32 ............................. GATCGATCGTTATTGTTGAACCGCACTATGGT 96526 29 100.0 32 ............................. CTTTTAATAATATCATCGGCAATGTCCTTATC 96465 29 100.0 32 ............................. CGGGACCGGATCCGCGTGGGCGACCAGGATTA 96404 29 100.0 32 ............................. CACCGATATTCAGTGCGCCAACGCCATAGCAA 96343 29 100.0 32 ............................. CCGAGGTTTTTCATACCTTCGGCAGTCGTAGA 96282 29 100.0 32 ............................. CGGAAATTTTGATTAGTTGAATCTGTGCCATT 96221 29 100.0 32 ............................. CCGACTTGGGACGAGGATCCGGCGGAATGTCG 96160 29 100.0 32 ............................. TAATGGCAAAACCATGACCTGATCCGGGCGTC 96099 29 100.0 32 ............................. CCTGAATCTTCACTTCGTCGATCATTCTGCGC 96038 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 95977 29 100.0 32 ............................. GTAACGCAGACGGCGAACGTCGGATCCATTGG 95916 29 100.0 32 ............................. GACCAGAAAGCCTGGGCATTGTTCCGCTCATT 95855 29 100.0 32 ............................. CCCCCGGCCGCGTGGCCGATTGCCATTACCGC 95794 29 100.0 32 ............................. TATACAGTATTATCATAGCGAATTCCCATCGG 95733 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 95672 29 100.0 32 ............................. GCACCAACGTTTACGGTGCGGTGGTGAAACAA 95611 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 95550 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 95489 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 95428 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 95367 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 95306 29 100.0 32 ............................. TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 95245 29 96.6 32 ........T.................... ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 95184 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 95123 29 100.0 32 ............................. CTGCAGGTAAATGACTGGATGGGGGAAGAGGT 95062 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 95001 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 94940 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 94879 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 94818 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 94757 29 100.0 32 ............................. TCCCCTACCACCCACTGAGCAAACTGGTAGCA 94696 29 100.0 32 ............................. CAGATACCAACGGTTACTACGGCAATCAGCAC 94635 29 100.0 32 ............................. AAGGTTGACCTGTTGTCGGCAACCATCGAGCC 94574 29 96.6 32 .........A................... GAGGCGCGCGTTGTCGTCGGTGAGATGCGCGA 94513 29 96.6 32 .....A....................... GCCATTCGTGCTTCTTCGCTTTGCTGCATCCA 94452 29 100.0 32 ............................. GAATATAAAACCAGATTCCATATAGCCCTGTG 94391 29 100.0 32 ............................. CCGGTTACGGGGATGACTGCAATTCGCTCCTG 94330 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 94269 29 100.0 32 ............................. GCGGCGTCAGGTGTGTGGCAGAAAATTATTGC 94208 29 100.0 32 ............................. TCGTCTGAGTTCCGGCTTACGCCGTGCCGACA 94147 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 94086 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 94025 29 96.6 29 ............T................ GGGTTCACTTGGGTGAAACTGAACTAACT 93967 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 65 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGGTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTA # Right flank : GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGATTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //