Array 1 62492-60809 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIOA01000011.1 Klebsiella pneumoniae strain K7118 Scaffold11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================= ================== 62491 28 100.0 33 ............................ TGACGACGACGGCGCGATCGGCCCGGGCTCGAT 62430 28 100.0 33 ............................ TGGACGAGAACACGCTCACCGGATTCTCAAAAA 62369 28 100.0 33 ............................ CAACATGCGTTTTTGCTTCCGCCCGGTAGGCGA 62308 28 100.0 33 ............................ CATGTAAGCCTCTTTCGCATCCTCGATCAGGTC 62247 28 100.0 33 ............................ TGGTCTATATCCGTGAGCTCGCCGTCGAGCGCC 62186 28 100.0 33 ............................ TAAAAAGCCCGTTCCCGCTCCGACAAATAGGGG 62125 28 100.0 33 ............................ TGGTGCCGCCGCCGGTGGTCAGAGTTCGACTTA 62064 28 100.0 34 ............................ TTGATCGTTAACCCACTGCTCCGCGTTTTTATAG 62002 28 100.0 33 ............................ TCGCTGCGCGACGCGCGGCACTACCGGGCGGAG 61941 28 100.0 33 ............................ TCGCCGAGCGGATTTACGATACGGAGTGCCTCT 61880 28 100.0 33 ............................ TGTCGTCGTTCGCCGACGCAAAGCTTTGTCTGG 61819 28 100.0 33 ............................ TCGTGGTTACCAGGATGGTGCGCTGCAGATGAG 61758 28 100.0 33 ............................ CTGGTCGCTCCCATAGTGTGACGCGGGGAACGC 61697 28 100.0 33 ............................ CGAGTCCGGGACGCCTACGACGTGCGAGAAGTC 61636 28 100.0 33 ............................ TAAAAGGGTATTTGAGGCGTATAAACGCGCGGC 61575 28 100.0 33 ............................ CGTCGAGTACCAGCGCGGTGATCTGATGCGCCA 61514 28 100.0 33 ............................ TATGGGCTGAATGACTTCAAAGCCGGGGTTATT 61453 28 100.0 33 ............................ TAAAATCCGCGTCATCATGCCGTTCTGCTGCCG 61392 28 100.0 33 ............................ TAGTTCGCGAGGAGACGCCCCAAGGTTCACCGC 61331 28 100.0 33 ............................ CAATAGTCCGCCCGGAGGCGGCTCATTGTGTCG 61270 28 100.0 33 ............................ TAACGACACCAGGCGGCATGATCACCTATGACA 61209 28 100.0 33 ............................ CCATGGCGGAGATAGAGACACTATTGAGTGAGT 61148 28 100.0 33 ............................ TCGCAAAAGGCGTGTATATCAATATCGGCAAGA 61087 28 100.0 33 ............................ CTTCACGCCGATGGAGCGGTCTTTCTGCGTCGA 61026 28 100.0 33 ............................ TATTTCGGAGTGGCCCAACGACGCCGCCGTGTG 60965 28 100.0 33 ............................ TCCGCCGTTTAATCGCGGTGATGATATCCGGCA 60904 28 100.0 41 ............................ TGGAATCCACGACGCGCCGTACCAGCGCGGGCATTCGTTCT 60835 27 85.7 0 ......A...T.T........-...... | ========== ====== ====== ====== ============================ ========================================= ================== 28 28 99.5 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTCCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCACAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : TTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGTAGAGGTAGGAATATTTTATTGCGATAGAGAAGGGAACTGTTTAAAGCAATAGCGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATACATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCCTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGCTACAAATTGGCTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 72190-71245 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIOA01000011.1 Klebsiella pneumoniae strain K7118 Scaffold11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 72189 28 100.0 33 ............................ TCAAATGTGACTCTTTTATGAGGTGATTTTGTG 72128 28 100.0 33 ............................ TGACCCCGGCTGATTGGGCTATATGCAAAAGGC 72067 28 100.0 33 ............................ TGGCCGAGCTCTGCCTGACGATTACGATATCAG 72006 28 100.0 33 ............................ CAGCGTGACATTGAAGATATCAGTTTCGTCATG 71945 28 100.0 34 ............................ CACACAAAAATGTTACTCGTGACCGTTTTGTTCG 71883 28 100.0 34 ............................ CGAGGTTCGAAGGCTGGATAACCTGCCGCCGCTG 71821 28 100.0 33 ............................ TATGGAGTTGGTTTATACTGGCTGGGTCGATAA 71760 28 100.0 34 ............................ CTCTGTTGAATCCCTGATATCTGCAAATGCCTGG 71698 28 96.4 33 ..............T............. TTGTCGAAGGGCATATTGACAGAAACCCTGCTG 71637 28 96.4 33 ........T................... TCGGTGTTCGTCCGGGTAAACGTGCCGGTGAGC 71576 28 100.0 33 ............................ TTTGATGAGGAATATGTAGTTTTCCCTGGCGTG 71515 28 100.0 33 ............................ TGATCAGCGAGCTGCTGATTGATATCGAAATCG 71454 28 100.0 33 ............................ TTCCATCATCTGCGGCGGGATAGCGCTGCGGGT 71393 28 89.3 32 ............C.........G...C. CTGCAGCTGGCCGTCGAGCTGACGGATGCCGG 71333 28 96.4 33 ..............T............. TTCATCACGTGTGAGCGGATTTGGCTCTATCCT 71272 28 92.9 0 ...................A.......T | ========== ====== ====== ====== ============================ ================================== ================== 16 28 98.2 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTTGACGGCGCCGCGCAGGATAATAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGTGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCGGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTTATATGGTGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : CGCCTTTCAAGTGTCGACAAGTAACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGATATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGAATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGATGTTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATGT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //