Array 1 166525-167537 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_LIPU01000003.1 Tepidiphilus thermophilus strain JCM 19170 JCM_19170_03, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                  	Insertion/Deletion
==========	======	======	======	=============================	=================================	==================
    166525	    29	 100.0	    33	.............................	GCCTGAGGAAACGATCATTGAGGAAACGATCAT	
    166587	    29	 100.0	    32	.............................	TCTGGCTAGTTCATTCGCCGATGTACGGCGGC 	
    166648	    29	 100.0	    32	.............................	GAAGAAGAGGGCGAGGGCGAGGGGCTCGTTGT 	
    166709	    29	 100.0	    32	.............................	TGCAGACAATACCGATTTTATCTGAGGCTTCC 	
    166770	    29	 100.0	    33	.............................	CACTTGCAAATCCTGAAGATCCCTGCCTCTCCC	
    166832	    29	 100.0	    32	.............................	CTCACCCTGGATGGCGCGCAGCAGGCCGAGGC 	
    166893	    29	 100.0	    33	.............................	TGGGGGCCCTACAAACTCAGCATGATCGAGACC	
    166955	    29	 100.0	    33	.............................	CCGTCGTAGATCGAGCGGATCACGCCCTCGCTG	
    167017	    29	 100.0	    33	.............................	GTCGTGGACGTGGACCATGACCGGGAGCATGGG	
    167079	    29	  96.6	    33	............................A	GCTGACGGTGCAGGTGCTCTAAGGATGAACCGC	
    167141	    29	 100.0	    33	.............................	GATGGCCTGCTGCCGGACGACCGGGAGGCGACC	
    167203	    29	 100.0	    32	.............................	ATGTACGAGGCCGGCTGCACCTACGTGGACGC 	
    167264	    29	 100.0	    32	.............................	CGCCTACACGATCTTGAAGACGGCCTCGGGGA 	
    167325	    29	 100.0	    32	.............................	AGGGCGAGGGTAGGGGATAGGTGCGCCCGGCC 	
    167386	    29	  96.6	    33	..A..........................	GATTGCTCGAAACGCCGGAACAGGTAGAGCAGC	
    167448	    29	  93.1	    32	..A.........................T	CGATGGCGTGACGCGCGACGGATTCTGGGTTG 	
    167509	    29	  93.1	     0	.................A..........A	|                                	
==========	======	======	======	=============================	=================================	==================
        17	    29	  98.8	    33	GTGTTCCCCGCGTGCGCGGGGATGAACCG	                                 	       

# Left flank :   NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
# Right flank :  AGGCTTATGGGTGACGAGCTATCGGCGGCTGCATCGCAAGGACGCCGTGCGAGACTCCGAAATCCGCCGGTTGCTGAATAAAGGCGGGAAGTGAGGCCGCGCCGGATCAGCCTCGCGGGGATCGCGTGGTGGACTCCCCTCCCCACCACTAGGGCCTTATGACCCCGGCGGGTGAATGTCCCCGCCAACCTTCGGTGTCCGGCGCACCTTCAGCATCTGCCGGGAGATTTTGCCGCGATCCCTTGATACCAGTATAGCACGATGATAAAGATCGAACTCGATGACCGTGAAGTCCGCCAGGCGCTCGAGCGTCTGGCGCGCCGCGTGGCCGACCTGTCGCCGGCCATGCACGATATCGGCCAGGCGCTGATGGAGGGTAGTCGCCAGCGCATCAGTGAGGGGCGCGACTGGCAGGGGCGTCCGTTCGCACCCAACAGCCCATTCACGCTGGCGAGAAAACGCGGCACCAAGCCGCTCGTCGATACCGGCAACCTCGTCGG

# Questionable array : NO	 Score: 6.20
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGTGCGCGGGGATGAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [3,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTGTTCCCCGCGTGTGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-12.70,-12.10] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-5] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [0.0-36.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0.64   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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