Array 1 128180-127420 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADAPM010000004.1 Escherichia coli strain UoL_17 4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 128179 29 100.0 32 ............................. TTGTGCGAACCTCAGTTATTGTGCCCTGACGA 128118 29 100.0 32 ............................. GGGATTTGCACTCCAGTTGATTGACCCGCAGC 128057 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 127996 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 127935 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 127874 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 127813 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 127752 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 127691 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 127630 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 127569 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 127509 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 127448 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 155189-153879 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADAPM010000004.1 Escherichia coli strain UoL_17 4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 155188 29 100.0 32 ............................. GCATTACGGTAAATCGCTGGGGCTGTCCCGTA 155127 29 100.0 32 ............................. CTGGGGCTGCACATTGACAATAAACCGCCGCC 155066 29 100.0 32 ............................. ACTTGATTACCGCTATTTTCTGACGATTTAAT 155005 29 100.0 32 ............................. CCTGATAATTTACGCTATTCAGCGGAGATGAT 154944 29 100.0 32 ............................. TGGCTATAGTATCATATGATTTCTATTTGTCA 154883 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 154822 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 154761 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 154700 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 154639 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 154578 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 154517 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 154456 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 154395 29 100.0 32 ............................. GCAAATTAAGCTGGCTGGCAATCTCTTTCGGG 154334 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 154273 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 154212 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 154151 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 154090 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 154029 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 153968 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 153907 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //