Array 1 104218-105244 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JRPB02000001.1 Helicobacter sp. MIT 11-5569 NODE_1_length_433360_cov_85.5712, whole genome shotgun sequence		Array_Orientation: Unconfirmed

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                	Insertion/Deletion
==========	======	======	======	====================================	===============================	==================
    104218	    36	 100.0	    30	....................................	TTATTCTAAGAGAAAAGAAAAACATTTTTG 	
    104284	    36	 100.0	    30	....................................	GCGCAAAAAATGAGTATGTGGGATAAAGTA 	
    104350	    36	 100.0	    29	....................................	CTTTATATAGGCATAAATTGCTATCAGAT  	
    104415	    36	 100.0	    31	....................................	TTTTTGATGTGCGCAATTTCAAACAATACAG	
    104482	    36	 100.0	    30	....................................	TAAGGAGTTAAAACAAACCTATCATACACT 	
    104548	    36	 100.0	    31	....................................	TCAAGGGCAAGGCAAAGTGCTTATTTTGCGT	
    104615	    36	 100.0	    30	....................................	AAATATTATATTAGTAAATCTCCTTTGGTA 	
    104681	    36	 100.0	    30	....................................	TCATCAGAGATATAGACTTCCACTTCAACA 	
    104747	    36	 100.0	    30	....................................	TTAAAGCAAAAGTTGCGGGAACACAAGAAA 	
    104813	    36	 100.0	    30	....................................	ATAAAGTTTTGGTAAATAAAACTTATGAGT 	
    104879	    36	 100.0	    30	....................................	TGAAATGAAAGCATTATGGGTTTAATAGAA 	
    104945	    36	 100.0	    30	....................................	ATAAAGTTTTGGTAAATAAAACTTATGAGT 	
    105011	    36	 100.0	    30	....................................	TGAAATGAAAGCATTATGGGTTTAATAGAA 	
    105077	    36	 100.0	    30	....................................	ATTTAGGAAAAAATAATAATATCCTAAATG 	
    105143	    36	 100.0	    30	....................................	AAATCAGCAATCTTGGATATTGATTCTACT 	
    105209	    36	 100.0	     0	....................................	|                              	
==========	======	======	======	====================================	===============================	==================
        16	    36	 100.0	    30	GTTTTAGCCACTTTTTAAATTCTTTTATGATAAAAT	                               	       

# Left flank :   TAATCACTTTTGCGCAACTTCCCATAAATGGAATCACACCATTTTTAGTATTTTGCTCCATGAGAGTTTTTAGCGTTTTAATCACTTCTTCTTCTAAAAATGGCTCATCAGCTTGCAGGTTAATCACAATTTCAGAATCTTTAAGGCGCAAGATTCTAGCGCATTCTGCGATTCTATCTGTTCCGCTTTCGTGCGTGTTGCTTGTTAGGATGGAATTTATCTTATAGTGTGCGCAAACATCTGCGATTATGGGTTCATCACACGCCACGACAACATCATCGATTTTTTTTGCGAGATTTGCAGTGCGTATTACCATAGGGATTCCATCAATTTGCTCTAAAACTTTATTTGGAAAACGGGTTGATTTAAGTCTTGCTGGAATTATAATCATTGTTTCTCCTTTAAAGTTTATAGGTATGATTATAGCACAAGCATTTTAAAGTTGTAGAGTTTATTAAAAAGCTAAGAACATTTTTTCTAATATTATCTTCGTTTGTTTT
# Right flank :  TACACCTCATTAAAATGGTGTATTTACGAATTTTGAGAGGTTTTAAAAAGGCTTAAATATCCTAAATAGGTATTTAAGGAAAATGAATTTATAATTCCAATCAAAGAATTTAATAAGTGGCTAAAATAAGGAGTTTTCGGTCTCTGCAGGGTTACAATCCCTTAAAACCGATTTTATAATTTCCTTTTCTACAAAATACAATAACCTTGATAAGATAATTTAACAACAAATTTCTTGCAAATTTTTTATCATAACAAAATTTAGAATCTAAAAAAGTGTGAGTTGTCTTGGTTTATTTACCTTTTCATTTTTACTTGGCTTTCCAAGCAATAATCGCATATTATCAAACTGCTTTTCTGTCAAGATTAACCCTCTAATATGCCCTTTAGGTGGTATCATCAAACCCACTTTATCTAAATGATTATTTGCACTTGCTATGCCTTTGCAGATTCGCATATAAACACTATATTGCAACATCATAAAGCCTGCTTTAATGAGCC

# Questionable array : NO	 Score: 3.26
# 	Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGCCACTTTTTAAATTCTTTTATGATAAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:80.56%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  NA [0.00,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [78.3-71.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         NA [0,0   Confidence: NA] 

# Array family : NA
//