Array 1 21021-18749 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNUV010000007.1 Lactobacillus delbrueckii subsp. lactis strain FAM 21769 FAM21769-i1-1_scf7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 21020 33 100.0 33 ................................. ATTTTCAGTAAGCCCTCCTTGCAAGATTACATC 20954 33 100.0 35 ................................. GTCGCCCACTTGGGTCACTTGGACAAGCACCATGT 20886 33 100.0 35 ................................. AAGCGATCTTGTCCGGTTGGTCAAAGGCAAGACAG 20818 33 100.0 35 ................................. ATCTAACCCAAAAGAAGGAGCGTCAGAAGAGATAA 20750 33 100.0 36 ................................. GACCAGGCTGTCCCAACATTTATCCGGCAAAAACGT 20681 33 100.0 37 ................................. TAGTTAATAGATGGCATCAGCGTGATGATCGCTTGCC 20611 33 100.0 37 ................................. ACAGTATCAAGGTCGTGGTTGGACACACACGTTTGCA 20541 33 100.0 36 ................................. TTATTGACAGTCAAGCAAAAGGTAAGAACGTTGCAA 20472 33 100.0 35 ................................. TCAAACAGGTATTAGGTGATAAGCCAGCAGATAAG 20404 33 100.0 33 ................................. CCACTGCTAAGACATTTAACAACTGTTCTTTAG 20338 33 100.0 34 ................................. AACGGAAGCAACCCGATACTGCCAGTAACGTCTT 20271 33 100.0 36 ................................. ATGACGGGCATCGGCTTAATTTCATGGGCTTTTGAT 20202 33 100.0 37 ................................. CAAGTTTGGGTTGCCGAACCAATTTAGCGTGTACGGA 20132 33 100.0 33 ................................. TGCAATGTAGGATTAAGCACTTGATCGCACAAG 20066 33 100.0 37 ................................. TCAAGGCCTTTGAGCCAGTCTCCCCAGTCAAAGCCGC 19996 33 100.0 35 ................................. TTATTGTGCGTGTACAAAGCCGCAAAGCCAGCGGC 19928 33 100.0 34 ................................. CAGATAGCCCGGCCTTGTCGAACGTCTCAGCCTG 19861 33 100.0 36 ................................. AGCGCATCGGTCATAGCTGATGCCAGGTCAGTCAAG 19792 33 100.0 34 ................................. GGTGATAACCTCTGCGGCGTATTCCCGCTTTTGG 19725 33 100.0 37 ................................. TGGCGACTATGATATGCACGACTACCGGATGCTCTAC 19655 33 100.0 35 ................................. AACTTGATGGCAAGACTTATCCGGTCTACGCTAAC 19587 33 100.0 34 ................................. TCAATCCATGCACTGAGAGTAACCGTTTGCCCAT 19520 33 100.0 33 ................................. ACTGACTGGTGAAGACGTCAACCGCTTGCGTAG 19454 33 100.0 35 ................................. TTCTCCCAATCGCGAAAGTTTGGCTATGACATCAT 19386 33 100.0 34 ................................. GCGATCGGTGGCACTCTAGTGGCGGCTGCTTTGG 19319 33 100.0 35 ................................. CCGCATAACTGGCAGACAGGTTATTTTATTGACAC 19251 33 100.0 35 ................................. AGTCGATCACTGAAGGCGACGTATCCGTATCCTTT 19183 33 100.0 34 ................................. AACTCCATTGCTGGCGGAGCTATGGTCGGCAACT 19116 33 100.0 35 ................................. ACAGGCATGGCTACGCAGTTCAAGACCATGGGTGA 19048 33 100.0 34 ................................. TTGCCCTTGATCGTCATGACCTTGGCCGTCTTCC 18981 33 100.0 34 ................................. ACTGCCGACCGCTGCCACGTAAACTGCGTCTTGA 18914 33 93.9 33 ..............................G.G GCTGAAGGGAAAGTAGCAGCAGAAAGAAGAAGC 18848 33 100.0 34 ................................. ATTTGCTGGTACAAAAGTAACAGAGTTACAACAA 18781 33 84.8 0 ..........A...AA....T......C..... | ========== ====== ====== ====== ================================= ===================================== ================== 34 33 99.4 35 GTCGCATCCCGCATGGGATGCGTGGATTGAAAT # Left flank : CGGATACCCTCCGTTTTTATGGAAGTAAGTGATTGTAGATGATGATGGTAATTGTCAGTTATGACGTGAATACTGAAACTGCTTCGGGAAAGAAGAGACTAAGAAATGTTTCCAAAATATGTAACGACTATGGCCAAAGAGTTCAAAATTCAGTATTTGAGTGTCTTGTAGATTCTACAAAGCTTGAGGAAATGAAGGAACGCTTACTAAAGGTATATGATGAAGAGTGCGACAGCTTGTACTTCTTCAATGTAGGCAAAAAATATGAGAACAAAGTTCAGTCTTATGGGTGTAAACAAGTATTAGACTTGGGAAAGCCAGTTGTCTTCTAATTATCTAGACAGTGCGAGTGTGAAGCTAACAGAATTAGGCAGAGGATTCGCACTGTTTTTGACTATTTTTTTGTAGTCTTGAATATAAAATTGCAGTTTTTTAATGCTTTTTATATTTTGTATGCCCAATATTTAGCTGTGAAAATGCTTTTTTTACTAAATGTTGCG # Right flank : ATCGCTTAGATATGTGGATGCTTGATGGTCAAATTCCACTAAAAGCACTCCCTAGCGGGGTGCTTTTTAATATTTCGCTAAATCAAACGCTTCACCAAGCAAGCAGGAAAAGATTATAGTAAAATATACTGGTTATAAAAAAGCTGAGCCAAGCTCAGCATCCCCAAAACAAAACTTAGTTGAGGAGAACAAACACATGCAAGATATTTATATTGTTGCGGCCAAGCGAACTCCATTTGGCCGTTACCACAAGCAATTGGCTGACTTTTCCGCCATCGACCTGGGCCAAATCGCCCTGCACGGCGCATTAAAAGAAGCCGGCCTTGACGCCGAAGCCCTGGATGCCCTCTTCATGGGCAATGTCCTGTCTGCCGGCTTAGGCCAAAACATGGCCCGGCAAGTTGCCCTAAATGCCGGGATGCGGCAGGACTCAGTCGCCGTGTCCATCAACGAAGTCTGCGGCTCCAGCCTCAAGGCTGCCCGCCTGGCTGAAGCTCAAA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCGCATGGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATCCCGCATGGGATGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.60,-9.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 5340-6416 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNUV010000076.1 Lactobacillus delbrueckii subsp. lactis strain FAM 21769 FAM21769-i1-1_scf76, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 5340 35 75.0 39 .C.T.....C...G.G.-...G...T.T........ GCATAGTGCGGATTGTAAGTAGCGACAAGCTTTGTTGCA C [5353] 5415 35 80.6 35 C..-.T.C......T...................AT GTGCAAAGCAGAATGAGTCTCCGTAAGGAATAAAA C,G [5444,5447] 5487 36 94.4 36 ....C..C............................ GAAAATAAAAAAAGTTGCAAGCGAAAGCTTGCTAGA 5559 36 100.0 36 .................................... AGAAAGAGGTAATAAAAATGATTTCCGAAAAAACTA 5631 36 100.0 43 .................................... AATACGACAACACTTATAACTATTGCGGTTATCTTGATAACTA 5710 36 100.0 37 .................................... TATGATGAAGATTTTAGAAAAGAGATGGAAAATTTCA 5783 36 100.0 37 .................................... CCGAACAAACTAGAAAAGCTATGTCAATAGATATCAT 5856 36 100.0 41 .................................... TCACCTAACCGAGCAACAAAAAGAAAAATTCCTCACTCACA 5933 36 100.0 39 .................................... ATTAAAATGAATTTAAAAGAAGTTTTGCAAGAAATTACG 6008 36 100.0 36 .................................... GCAAAAGGATAGCGTGATCAGTCACATGGACGACGT 6080 36 100.0 38 .................................... TTTACTACCGTTCAGTACTCGTTAGATGTTAGTCAAGA 6154 36 100.0 37 .................................... CTGTTAGACTTGAGACAAATCAAAAAAAGGAGACTAA 6227 36 100.0 41 .................................... CAGTATCGCTCTGATTGTGAAGAATGGTTAGAGGACCTCGT 6304 36 100.0 41 .................................... GAAAATAAGGAATTGGTATTGTTGGCGGAAGAAGACCGGGA 6381 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================================== ================== 15 36 96.7 38 GTTCTCGTCTCCTTCTAGCGGAGATAAGTTGTTAGC # Left flank : TGGCAAAAATCCGCACGCTGAAGCGTTTGATCGCCCGGCAGACTTGAACTAGATAAAGTAGCGATAATTGGATTAAACGGTTGGCCAGGATCTTATGGTTCAGCAAGTCATACAAGCCTTGGACCAGCTGCCCTTGAAAGTATGGTCCAGCGCAGCGACCATGCCGATATTGTAGATCAAGCCTGAAATAGTAACGACCACAAGAATTGGCGCTTCTTACCAGAAGTAGCTGCTCATTTTCTTGGGGTCGCGGGTATTTTCTGCTTCATCTCGCTGCCTCCTCTGACTGCAATTTTGCCCGCTTCTCTGCATCCGCTATCAGCATTTCCACCTTCATCATAGCACCGATTCTTCTTCAGTCTAGTCCATTTTGGACGGAATGAAGGAGGTTTTTTATACGAAAAAACGGCCAGCAACTGGCCGTTTGGCTTATGTCTCCTTTTAACGGAGATTGTGCATTGAAAATAGATTGATTAATAATATAGCTCTTTTCTTTAAAT # Right flank : TCTTTGAGGATCAAACGCTCGTTTGTGAGGTATTCGGTAAGCACCCAATAGCAGAGTATATTAAAATCCCATCCTAGCAATGCTAAGATGGGATTAATCAGTTTATAGGACTTTATTTACAGTGGAGCTGGACATTCTCAGCCCATGGTAAATAGGCTTCCAGACGTTGAGTGTCTAATAATGACAGCTCATTGGGCAATTTGTCTAAAAGATAGTTGATATATTTGAATTGATCCAAGCCATTTTGCTTGGCGGTTTCGAGTATGCTCATTATGATTGCCATGGACTTGGCGCCGGTACTGCTCTGTGAAAAGAGCCAGTTCTTGCGTCCCATGACGATCTCTTTGA # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCGTCTCCTTCTAGCGGAGATAAGTTGTTAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [21-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 174-1475 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNUV010000013.1 Lactobacillus delbrueckii subsp. lactis strain FAM 21769 FAM21769-i1-1_scf13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 174 36 100.0 37 .................................... GACAGAAAAAAACAAAAAGTTTTAAAGTTTTGCTTTT 247 36 100.0 35 .................................... TGTGAGGACGATTGGCCGGCTATGGAATGGTTTAT 318 36 100.0 37 .................................... AATTTTTGCTATTATTAAATATGTGCTGAGGCACGAG 391 36 100.0 41 .................................... AACGGAGTGACATAGATAAGTGGGCCAAACAGTTTAAGGAG 468 36 100.0 41 .................................... TTAGCTGATGCTGCTGAAAAAATTGCAAAGGATAAACAATG 545 36 100.0 39 .................................... CAGTACTACTGGACGGTGGAAGACGGCCAGGTAGTTGAA 620 36 100.0 37 .................................... TCTTCTCTGTGATTGGCTTTATTGCCGGCCGCTTTCC 693 36 100.0 41 .................................... GGAGCTTCTGGCCGAAGACGAATTTTGGGATGAGTACTCCA 770 36 100.0 42 .................................... GAGATCAAGAAGTTTATCACCATGAAAGAGTTCACTTACAGA 848 36 100.0 38 .................................... ATCAACGCTCTTTGGAAACAAGTTTGACCAGTACTTGA 922 36 100.0 38 .................................... ATGACTAAAATTGAAAGTTATGTAACTCGTGAAATTGG 996 36 100.0 37 .................................... GAAAACCTAGAAAATGACATGCAGGAAAACGGTGTTT 1069 36 100.0 37 .................................... AATATGTGAGTTTGTTAACTTCGTTATTTCTGAATAT 1142 36 100.0 38 .................................... GCAAGCTCTGCTAGAAGCATCTAAGGAGCGTGAAGCAA 1216 36 100.0 37 .................................... TCAAGAAGTTGGCGGATTTGTACAAGATCCCGACTGA 1289 36 100.0 41 .................................... TCTATGACCAGGCATTACAACAGGATTGGAGAAAAGAAAAT 1366 36 100.0 38 .................................... CCAACTGGGTAATCCGTTTCATCTCTAAGATGTTCAGT 1440 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 18 36 100.0 39 GTTCTCGTCTCCTTCTAGCGGAGATAAGTTGTTAGC # Left flank : GTTTTTTGGAAGCTTATTCCTAGGTCTGAGTTTGTCCTTCGGCAGCTCGAGCGGTACGATTGGATGTTCAGTCATAATATCGTGTTCCTCCGTATTCAATTGTTAAGAACAGTATATGACTATTGACCAGGGGTTGATAGATACCGCGCTATTGGGTGCTTACGGTATTCGTAG # Right flank : CAGATCCTGTTTAAAACGTTATTACGTCGCGCATCCCCAAGCATTTGTCTCGTCTAAATCCTGGTCAACGCCCATCAAACAGCATCCCTCTTTGTCCTATTTTTGGACAAAAAAGGCACCTCTGCTAATTGAGAACATATAAATTATACCACACCAGATGCTACACCACGATCACCTTAGGTACTGACACTGCCTTCATTGGTGCGTCTGGACCCAAAATGTTAATCTGCTTGTTATTCACCTCATCTGGCAACAGATATAGAGTTATCATTCCATCATCTGGAACTTCTTTTTTCAAAATCCCAATCAAATGGTCTTTCGTAGTATCTGACTCCACCTCCCGTTCATACAGGCTGTACTGCTTCATGTCAAATCCCAACTCAACCAGCCGTTTCCTGTATTCCGCGGCTTTCTTTCGCTCTTCTTTGGTATTTCTAGGCAGATCAAAGCTTAAAAGAAGTACCATCATTTTCCTCCTTGAATGAAAGTCGGCAACTTCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCGTCTCCTTCTAGCGGAGATAAGTTGTTAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //