Array 1 110100-107081 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP079862.1 Frankia sp. ArI3 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 110099 29 100.0 32 ............................. ATCAACGCCGTTGATTTACCCCGCTGGGCGAG 110038 29 96.6 32 ............................T GTCCGCCAGTTCCCGGGGCGCCGCGAAAACGT 109977 29 96.6 32 ............................G GACCTGCGGCAGGGTGATCGGATCGTCGTTAA 109916 29 100.0 32 ............................. ATCTGTTCGCATGGGGTATCAGCCTCGAACGT 109855 29 100.0 32 ............................. AGCGCCCGGTCGCGGATGCCGAGCGGCCCGTC 109794 29 100.0 32 ............................. GACGTCCACCAGCGGCGCGATGGTGCAGATCA 109733 29 100.0 32 ............................. TCTCCTGTGGATCATCCAGTGGAGAGTGGAGA 109672 29 100.0 32 ............................. GTCTACGCCGACCACGGCCACGACATCGCCGC 109611 29 100.0 32 ............................. TGTCCCACCTGCCTTTGAGGCCGAGGAGATGC 109550 29 100.0 32 ............................. ACGATTTCGGTGGCGGGGATGGTGCGCCGGCC 109489 29 96.6 32 ............................G GGAGGGTTATCGGGCGCTAGACTTCCGGAATG 109428 29 96.6 32 ............................G GCATGGAAGCTCGAATACCGCAGATAGGACAG 109367 29 96.6 33 ............................A CCGCATGGACCCGCTCGCCTATCTGGACGCCGG 109305 29 100.0 32 ............................. CGGCCCGAGGCGGGTGGGAGTTCCTGGCGATC 109244 29 96.6 32 ............................A GCCTCCACGCCGATGGCGTCCTCAAGCTGGCC 109183 29 100.0 32 ............................. TCCTGCGCCTCCGCGGAGGTGTCGTAGGAGCC 109122 29 96.6 32 ............................G GAATGGAAGCGGCTATCAGCCGGATCACGGCG 109061 29 100.0 32 ............................. CACACGGACCTACGCACCCTCCACTCGGCGCT 109000 29 100.0 32 ............................. TGCCGGACCCGACACGACCTCGGCGACGACCT 108939 29 100.0 32 ............................. GTCCCATACAAGCTGGGCGGCGACACTGTCGG 108878 29 100.0 32 ............................. TCGGGTGTTCCGAGAGACGACGCGGCGATCAG 108817 29 96.6 32 ............................G GCCGCTGCCCCGACCTCCTCGACGGCGGCCCG 108756 29 100.0 32 ............................. ACCCGTTCTTCGAGCAACACCAGGCGGCTATC 108695 29 100.0 32 ............................. GTCTGCCCGTCGCGGGCGCGCGCCTCCCAGCC 108634 29 96.6 32 ............................G CCCCGGATGGTCGTCTCCTCCCCCGAGTCCGT 108573 29 100.0 32 ............................. GACCTTGGCTGCCCCCCGTGACGGCGGGCCGG 108512 29 100.0 32 ............................. TACTGGTGACCGATGGACAGCCCGCGATGGAC 108451 29 100.0 32 ............................. CGCACCTCGGTGCTGTGGGCCTGCCAGGCGAA 108390 29 100.0 32 ............................. GCCGAGCTTCATGTTCTTGTAGACACCGGTGA 108329 29 100.0 32 ............................. GCATGCTGGTAGCCGGAGCACAGCCCGGCCGT 108268 29 100.0 32 ............................. CCGTGGGCGAACGCGATCGAGGCGGCGGGTCG 108207 29 100.0 32 ............................. AGCGCCGTGTGCCAGGAACACGAGGCTGAGGC 108146 29 100.0 32 ............................. AGCCCTGCTTGAGCCCAGCGAGGACCGAGGGC 108085 29 96.6 32 ............................T CATGTCCTGTCGACGCCTCCCGTCCCGGAGGA 108024 29 100.0 32 ............................. GGCTACCCGGCGCGGCGGCCGACTGGCATCCA 107963 29 100.0 32 ............................. CCGTGCCACGCGGGAGGCACCGTGATCGTGAT 107902 29 100.0 32 ............................. CCGTGGGACTACGCGGATGGCTTCCGGGGGCG 107841 29 100.0 32 ............................. GACGCGCCGTGGGCAGAAAAAACCCACGTCCA 107780 29 100.0 32 ............................. ACCGCGCGGGCACCCTGGCAGGGCGGACCCGG 107719 29 96.6 32 ............................T GGGATTTGGCGGACCGCGCAGGCCGGCGCGGT 107658 29 100.0 32 ............................. CCAGTGCACGGCGGTGCCCAGTACGTCCAACG 107597 29 100.0 33 ............................. CCTGCGGGACACGATCCGAACCCGAATCGCCTA 107535 29 96.6 32 ............................G GACATGGGCTATATGGGAGCCGCACCGTCGGG 107474 29 100.0 32 ............................. GGCGTCGACGACCTCCGCCCACGTGGCGTCGT 107413 29 96.6 32 ............T................ ACGGGCGCCGCGACCTGGTCGCGCCAGAGCGA 107352 29 93.1 32 ..........T.................G GGCCTGCACTCCGGCAAGCGGGTCACCCTTCA 107291 29 89.7 32 ..........T.....T..........T. TGGACATCACCACCCTCCCCGGCGACGATCTG 107230 28 93.1 32 ........-..................T. CGCTCCACAGAGTCATCGCGGTGCACCGGGCC 107170 29 86.2 32 .....AT.....G....A........... TCGTCCAGGAATGCGGGAAGATTGCCGAGCGT 107109 29 89.7 0 ............T.......A.......G | ========== ====== ====== ====== ============================= ================================= ================== 50 29 98.2 32 GTCGTCCCCGCACGCGCGGGGATCTTCCC # Left flank : CGCATCATCCACGACATCAAGGACCTTCTCCTCGACGACGCGGACGCGGACATCGACGACGCCGACGCCCTGCACCTGTGGGACGACGTCGATGGCCATGTCCCCGGCGGGGTCAACTGGGCGATCGACCTCGCCGACGGGACCGACGACACCACGATCGTCGGTGTCACCGGCCCCGACACCGACCAGCCACCCCCGCCCTGGTGACCGTCGTCGTCCTCATCGCCGTCGCTGAGGGCCTCCGCGGCCACCTCACCCGATGGATGATCGAGATCGCTCCCGGCGTCTTCGTCGGCAACCCCAGCGCCCGCGTCCGCGACCGCCTCTGGACCGTCCTCGCTGACCGCGTCGGTGACGGCCACGCAATCATGATCGAGCCAGCCGCCAACGAGCAGGGCTGGTCCGCCCGCACCGCCGGCCGCGACCGCACCCACCCCGTCGACTACGACGGACTGATGCTTTTCGCCCGCCAACGCCGCTAAACCCCCAGGTCAGCAAGC # Right flank : GCGAACACTCGGCGGCCGGATCCGTCAGAGCGACGGGATACTCAGTGGTCCCGACGTCGGTGAGGTCCCGGTGCGTGGTGATGGCGGTGGTGCGCCTTGCCGGCGATCATCCCGACGATGATGAGGGGCCAGGGGAACCACATCGCGCCGTGCGTCAGGACCGGCAGAACGAGGAAAAGGGCGAGGATCGCGACCGGGATCACGGCATGCGGCGGACCGGCCAGGTCGAGCCCGTGCAGTCGATCGCGCAGGCCGGGACGCTGTGCCGGCGGCGCGGCGGGTTGCGGCCTGGGCTGCAGGTCCGCCGTGAGCGAGGCGAGCTCGTCGAGGGTGCGGGCCGCGTAGGCGTGGGCCAGCCGCTCATCCGCCTCGTCCAGGGTGAGCTGCCCGGTTCCCGCAGCCCAGGCAAGCCAGTCGGCGGTGCGCGTCCGGTCCGCGTCGCTGGCCCGTACAGCGCCGTCCGGTCCGTTCTTCGAGGTGCCGAGATCCCGTGCGTCGTC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCACGCGCGGGGATCTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCATGCGCGGGGATCCTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 124007-120200 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP079862.1 Frankia sp. ArI3 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 124006 29 100.0 32 ............................. CGGGTGAGCGCGGAGGCCGGTACGGCGCTGCT 123945 29 100.0 31 ............................. CGGGGGCGTCGGCTGATCTGATTCAGGTTTA 123885 29 100.0 32 ............................. GCTTGACCGGATCCGACTTTCATTCACTGTTA 123824 29 96.6 32 ............................G TGAATAAATGCGAACTGCATGAGGGAGGGGCG 123763 29 100.0 32 ............................. CCCCGGGGCGCCCCCCTCATCCTCGGTACCGA 123702 29 100.0 32 ............................. GATGGTTGGGATATTGCTTCTAGTCAATTTCA 123641 29 100.0 32 ............................. GACTCGTTCTCCGGCGCCGTTGTCCTGCTCGA 123580 29 100.0 32 ............................. TGCTGCGACCGGCCGCGGGCCGAGGTGACGAC 123519 29 100.0 32 ............................. GTCGACGGGGAGCCGTCCCAGACCGAGGACTC 123458 29 100.0 32 ............................. CGCCCGGCGGTGTGCTGGAGCTGGGCGAGACG 123397 29 100.0 32 ............................. CTGGCCTTCACCGGGGAGGACTCACCCATGGC 123336 29 100.0 32 ............................. TGATCGGGATCGGGATCGGGGCCGGGGGCTGG 123275 29 100.0 32 ............................. TCGGTGGCCTCACGGGCCTTGACCAGCGGTGA 123214 29 96.6 32 ............................T TTGTCTGCGCATCCGGACGTTACCCAGAAACA 123153 29 100.0 32 ............................. CCAGCTGGCCGCGCATCATGCCGAACAAGTGT 123092 29 100.0 32 ............................. TCATCGGTCATTGGCGACCTCATACGCACGCC 123031 29 96.6 32 ............................T CAGTGCGGGGGGTGCGCACCACCTACCCCTAA 122970 29 96.6 32 ............................G TCGATGGTGGGACGGGATGAGGCAGCGATGCG 122909 29 100.0 32 ............................. ACGTCCTCACCGCCTGGAACGCCGCGGAGAAG 122848 29 96.6 31 ............................A CCCCGGCCGAAATGCCCACCGACCCCGACGG 122788 29 100.0 32 ............................. GCCGAGCAGATCCGGCAGGCCCAGACGCTGCT 122727 29 96.6 32 ............................A CCTGGTCGCCGCAGCGCTCGACGGCACGCTGG 122666 29 96.6 32 ............................T AGATTCCTGTTGCTGCGGCGTGCTAGATCGGC 122605 29 100.0 32 ............................. TCCCGGATCGCCCGCGCGGCCGCCCCAGCCCC 122544 29 100.0 32 ............................. GGCTGTCTACGAAGTGGATCACTGCGGACGTT 122483 29 100.0 32 ............................. CTGATCACCGCGGCGGCGGGCATCGTGGCGGA 122422 29 100.0 31 ............................. CCGGCGGGCCGGTCGGCGCCGACCCGCCACA 122362 29 100.0 32 ............................. CATTCGAGAGGACGCGGGATGCGGGAGCAGGG 122301 29 100.0 32 ............................. TGCGGGATGTCGTCGGGGGTCCGGGAGTTGTT 122240 29 100.0 32 ............................. CCGACCCGTTCCCGTTGCCGCCGCGGCCACCA 122179 29 100.0 32 ............................. CGGGCGGGGTCCTCGCCTTCTGGCCCCGCGGC 122118 29 100.0 32 ............................. CGTCCCGCCGACGCCGGGCCGGTGATGGGCCG 122057 29 100.0 32 ............................. GCGGCAGCCTGCACTCCCGTGGGCGTGCCCGC 121996 29 96.6 32 ............................G ATCCACCATGCGGGTTTGGAACTCCTGGGTGT 121935 29 100.0 32 ............................. ACCGTCCGGCATCTCGTGTGGGTCGACGAGGA 121874 29 96.6 32 ............................T GGAGGGCATCGACGGCGGTAGCGCAGACCTAG 121813 29 100.0 32 ............................. GCCCGGCTCTCCGGCCACGAACCGGGCCCGGA 121752 29 100.0 31 ............................. CCGGCGCCTGCGGTTTCCACCCCGGCCTCTG 121692 29 100.0 32 ............................. GCGGGTGGTGCCGGCGGGTCGCCCACAACGGT 121631 29 96.6 32 ............................T CGCGCGGTCGTCGCTCGGGCTCCAGTGCAGCG 121570 29 96.6 32 ............................T GTCGAACAGGCCGCGGTGTCCGAGATGATCGC 121509 29 100.0 32 ............................. GCCGGCTCCACGCGGCGGATCTGCGGTACGGG 121448 29 100.0 32 ............................. GCCGGATGCCCCCGACCCACCGACCCGGTGAT 121387 29 100.0 32 ............................. GATCCGGTCTACATAGCTTTTGTAGTACATCC 121326 29 96.6 32 ............................G AAAAACAGTGACAGCGCTACACCGGTCATCGG 121265 29 96.6 32 ............................T CGGACGCGCCAGGGGGGAGGGCTGGAGTCGTC 121204 29 96.6 32 ............................G CAGGCCACGCGAGAGCAGAGCCTTCATGGTGC 121143 29 100.0 32 ............................. CGTAGCCCACGTCAGGGTTACGGTGTTCGTGG 121082 29 93.1 32 ..........................T.T ACCGGTAGTTCCGGCCCCGGCCGGTGGCGAGC 121021 29 96.6 32 ............................G CAGGGACTACAGCCGGAACGGGATACCGGGTC 120960 29 100.0 32 ............................. GCGGCGAAGACAAACCGATCAAAGTCGCCGAC 120899 29 96.6 32 ............................T GGCACCGTGGTGCCCAATGGCGCGTCTACGTC 120838 29 96.6 32 ............................G TTGGACAGCGGATATCCGCCTGTGTTGAGGAG 120777 29 100.0 32 ............................. TACGCCACGGTTGACGCGGACATCCTCGCAGG 120716 29 100.0 33 ............................. AGGCTCTCCCCGCGGCAGGCAGGGCAGCGGCCA 120654 29 100.0 32 ............................. CGGCGTACAGATCCCGGTAAAGCTCCGAGTCG 120593 29 100.0 32 ............................. CGATATGACCATGAGCCGTGGCCGCGCTGCTC 120532 29 93.1 32 ......T.....................T CGCACCAGCGCCTGATAGTCGTCCGCATGCTG 120471 29 100.0 32 ............................. GTCACGGAGGCTGGGTATCGCCACCCGGCTCG 120410 29 93.1 32 .......T....................G GAACGGCCCACGGAGTGACCCGGTCCCGACCC 120349 28 93.1 32 ...........-................G GGCGGGGACATATCCCAGTGGTCGACCTCGGT 120289 29 89.7 32 ...........CT...............A TGGGTCGTGCTTCACGCCCTCCACCCCGCGTC 120228 29 93.1 0 ......T.....T................ | ========== ====== ====== ====== ============================= ================================= ================== 63 29 98.4 32 GTCGTCCCCGCACGCGCGGGGATCTTCCC # Left flank : CTGCGCTCGTTCCTGCTCCGGATGCACGAGGTGGTTGGAAGCTGCCGGGGCCTCGCGGCCCACCTCGCGGCGCACGCCGACGACCCCATCACCGCCCGCCTCTACCACCCGTTGCACGCGGCGCTCACCCAGACCGGCTTCACCCCCGACGGCGCCGACCGGGTGCTGCGCGTGCTGTTCTTCTACACCTCCGGCGCGCTGCTGACGCCCGCGTCCGAGCCGGCCCGCGAGCGCGCCGCCGCCGACTTCGCCGCCGGCCTCGACATGGTGCTCGACGGCGTCGCCCACGCTCTCGCCGCCGAGCACGACCCCACGCCCTGATCCACCAGCCAGCGTCGCTCCGGCGCCGGCACGGCAGCCAGACGCATCCCCTCGGTCGGCCTACTCGCCCCCTCCAAATCCGCGCTACTCGTACGGGACGCGGCAAGGCTGGCGAACGTCCCGCGTCCCTACCGATGCAAATTGCGCCGCTCTGTTGCTAAAGTCCCAGCTCAGCAAGT # Right flank : GTCATCTCCGTGCTCGACACCATCGGCCGGTAATTGTTCCCGCAAGTGCGGGAGTTCTGTATGTCGCAGGTTTCGTGCCTTGTCATTTTTGACTACACGGAAATATATCCTGTGGATGATGGGTCTTGGGGCGTTTTCTGCTTGTCTCTGGAATGCGATTGAGTGGAATCTTTGAGAGGGGTGTGTGTGGAGAGTTTGGCGCTGGGAGTGGTGTGGGGGAAGTCGGCGGAGAAGGGGGGTGGTTCGATGCATCTTCTGCTCGGGCATCTGCTGGATACGGCCGCAGTGGGGGAGCTGGTCTGGGATCGGTATCTGGCGCCGGTGATCCGGGAACGGCTCGACGCGGTCAGCGACGGGCAGGGGCGGGCATTGTTCGCGTTGGTGTGCGGGCTGCATGACGTCGGGAAGGCGACGCCGGCCTTTCAGATGAAGGACGACGGCCTGGCGGCACGGGTCCGAGCGGCGGGTTTCGACTGGAAGAGCGTGAGCCCGCAGCAGGG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCACGCGCGGGGATCTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCATGCGCGGGGATCCTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2347613-2344769 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP079862.1 Frankia sp. ArI3 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================================================================================================================================================== ================== 2347612 29 65.5 163 CG.....GA.A.....T.T...C.C...T GGCCCAACGCATCGGCGACGGCCAAGCCGTCATGATCGAACCGGCCGACAACGAACAGGGTTGGGCCGTCCGCACCGCCGGCCGCGACCGCGGCTACCCCATCGACTACGACGGACTAATCCTTTTCGCCCGCCCTCACCGATAAACCCCCAGGTCAGCAAGG 2347420 29 100.0 32 ............................. ACCGGCCCGCCGGGTCGTTCGCCGGTCGAGGG 2347359 29 100.0 32 ............................. GGCGACCAGACGGACCACACCGACGTCCCCGC 2347298 29 96.6 32 ............................A GCTGCGGACCATGGAGAGTCTCGGCCTGCAGG 2347237 29 100.0 32 ............................. ACCGACCCCGCCTATCGCCGATCCCCTACCAA 2347176 29 96.6 32 ............................G CACCCGGCGTCATTCCCGCCCACCTGGAAATC 2347115 29 96.6 32 ............................G CACGGCCGGGTCGGCCTGACCGAGCGTCGCCG 2347054 29 96.6 32 ............................G TACATGGCGTCGGGTTGCGCACGCGACGTGGT 2346993 29 100.0 32 ............................. GGCGATGTGCGGAGTCTCAGTTTCCGTCCGCA 2346932 29 100.0 32 ............................. CCGCCCGGCGACTGGTGCCCATCCGCCACTCC 2346871 29 100.0 32 ............................. TCGGTGGCCGCCTGCTCCACTTCGAGCGTCGA 2346810 29 100.0 32 ............................. GTCGCGCCCGCCTCGAGGTCGAGTGCGGGCCG 2346749 29 100.0 32 ............................. CGACCGAGGATCGTGGTGGACACGAGTAGATA 2346688 29 100.0 32 ............................. GCGCCCGCACCGGCGGCACGTTCATGGCCGAC 2346627 29 96.6 32 ............................T TCTTCGGCCCGGAACCGATCAGCCTGCGGCTC 2346566 29 96.6 32 ............................G CTGCCCGCGCACAAGGAGCTGCTGATGGAGGA 2346505 29 100.0 32 ............................. TGGGCCGTCGGACCGGTCGGCAGGTCCGCGTC 2346444 29 96.6 32 ............................A CAGCTACAACGGGATGCCGAGAGCCGCATTCG 2346383 29 96.6 32 ............................T CCGGCGTTGGCCGAGGGCGACGTCATCCGCGT 2346322 29 96.6 32 ............................T TGCACGGTCCTCGTCTCGCTGGTGGTGATCTT 2346261 29 96.6 32 ............................G GCCATTCGGACGTTGCGTCACCACCGCCAGGA 2346200 29 100.0 32 ............................. TGGTACGGGTCGCCGGGGACCTCGCAGAACGG 2346139 29 100.0 32 ............................. CGGGCACCGCACCGATCCGCAGGTCGAGGGGG 2346078 29 100.0 32 ............................. CCATGATCGGGGGATGTGACCGACGTCACGTC 2346017 29 96.6 32 ............................G GGACACCCACATGGTCGACGCCGACCACCTGC 2345956 29 100.0 32 ............................. ACCGTGATGTGCGTGGTGCCCGTGCACGTGCT 2345895 29 96.6 32 ............................T CACCCGAAAGGCTGCGATACCGACCGCGTCCT 2345834 29 93.1 32 ........................C...T CGGACGCCCGCGACCGGCTGCGCCAGGCCGCC 2345773 29 100.0 32 ............................. CTCGGGGCGATGTCGCTGGTCGGCGGCTGGAC 2345712 29 100.0 32 ............................. CGCAGCCCAGCGCGCGCGCCGTCGCGGTCGTC 2345651 29 96.6 32 ............................G CGGGTTGGCCAGCTCGTGGGCACGGCGATGAC 2345590 29 100.0 32 ............................. ACGTGCTGGACGTGGGTGAACGACACGGCGAA 2345529 29 100.0 32 ............................. CCCGCGTCGATGTAGTCCTTGATCGCGGCCTC 2345468 29 100.0 32 ............................. CCGGAGAACGTCGGGCACGTGGCGTTCGGGTC 2345407 29 100.0 32 ............................. TTCGGTGACGGCTGGGTGATGCCGGCGCTCCA 2345346 29 96.6 32 ............................G CGAACCGCGGCGGGGATGTTGAGCAGGATCGG 2345285 29 96.6 32 ............................T GTCGTTCTGGATCTGGTTGCGCTTGATCCCGC 2345224 29 100.0 32 ............................. CCCGGGTAGCCCTCGGTGTCCGAGACATCCAT 2345163 29 96.6 32 ............................G CTGCTGGGTCCGTGGACCGTCACCGCGGACGA 2345102 29 96.6 32 ..................A.......... CACAACGGGATGCACTACTGGGGCGGGCCGAA 2345041 29 100.0 32 ............................. ACCGGCGCCGCCAGCATCCCGTTCACGCTGGC 2344980 29 100.0 32 ............................. ACGCCATCGTCCACGTCGCGTCGGCCCTGGAG 2344919 29 93.1 32 .............A..............A CTCACCCGCTGTGACGTCGGCACGGAGCGCGC 2344858 29 100.0 32 ............................. CGGAGCGTTGCAGCGACTGGCCGCGTCTGGGT 2344797 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =================================================================================================================================================================== ================== 45 29 97.6 35 GTCGTCCCCGCCCGCGCGGGGATCGTCCC # Left flank : ATCGGCGCCAGCCCGGCACTCGGTTTCGTTCACACCGGGTCCGCGATCTCCTTTGTTCTGGACATCGCGGACCTCTACAAGGCGGAATACACCATTCCGCTCGCCTTCGATCTGGCCGCGGCCGGAACCGTCGAGGAACGCGACATCCGCACCGCCTTCCGCGACAAGGTCGCCGACGGTCATCTCATGGGACGGATCGTCCGCGACCTCAAGGACCTGCTTCTCGACGGCGAACAGGCCGAGACCGGTGATCAGGACGCCCTGCACCTGTGGGACGAACTCGACGGTCAGGTCCCCGGAGGCGTCAACTGGGCCGCCGACTACGCCAACGGATGGGACGACGCCATCAGCCTCGGCATCGTCGGACCCGACGTCGACGGCCAGACCGACCCCTGATGACCGTCGTCGTGCTTATTGCGGCCGCCGAAGGGCTCCGCGGCCATCTCACCCGCTGGATGATCGAGATCGCCGCCGGGGTGTTCGTCGGCAACCCCAGCGCC # Right flank : ACGATGCCGTCAACGGTCAGCGGGATCAGGTGGTCGTCCCCGCCCGCGGGGTCTGTTGCATTGGTGAAGTCCGTGGTCTCGGCGACTCCTACCCAGGGTGATCGATTCATGTGTCGGCGTGCCGTCCAGCCATCGGTTCCGGTCTCGGAGTTCGTCGGGTTCCGGTTCCCACCCGAGGTGATCGTCTTGGCTGTCCGCTGGTACCTGCGGTACAGCCTGTCCTACCGCGACGTCGAGGAGCTGCTCGCGGAACGCGGCATCACCGTCGATCACGTCACGATCTACCGCTGGGTCCAGCGGTTCACTCCGCTGCTCGTCGAGGCTGCCCGGCCGTGCCGACACAGCCCTGGAGACAGGTGGTTCGTCGACGAGACCCACGTCAAGGTCGCCGGCCGGTGGACCTCCCTGTACCGGGCGATCGACCAGATCGGGCAGGTCATCGACGTCCTCGCCGCCGAACGGCGTGACCTGGCCCCGACCCGACGGTTCTTCACCCGAGC # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.26, 8:1, 9:0.86, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCCCGCGCGGGGATCGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,4.5 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 4 2357468-2362569 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP079862.1 Frankia sp. ArI3 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =========================================== ================== 2357468 28 89.3 34 ...T............A..A........ ATGTGATGCTCCGAGACGAGCCGGGCGAGCCCAG 2357530 28 85.7 32 C...C..T..............A..... GACGCCGATGGTGAAAGGATGATGAAGAGGAC 2357590 28 96.4 33 ...............A............ AGCCCCTCGACCTTGGAGAGGTCCACCCCGTCC 2357651 28 96.4 33 ...............A............ GTGACCTCGTTATCCAGCGCGGTGTCAATGTGC 2357712 28 96.4 33 ...............A............ CCCGGTGCAGGACGGCGGTGAGACGGATCCCGG 2357773 28 92.9 32 ...............A.A.......... CCGCCTCGCGGCTGCCCCGAGTGCCCTGAGGC 2357833 28 96.4 33 ...............A............ ATTTCTGCTCGTTCCCCGGCCGGTCCGGGCGAG 2357894 28 96.4 34 ...............A............ GACGGAAGCGCTGCCGTTCCGGGAAGCACCGCGG 2357956 28 96.4 33 ...............A............ GCATCGCGGGCGATGCACTCGTTGACGTCACAC 2358017 28 92.9 33 ...............A......T..... ACCAGCACAGCGGCGCGTGCGGCCCAGAACAGG 2358078 28 100.0 33 ............................ TGGCCGTTGCGAACACAGACCGCCTGGTTGGGG 2358139 28 100.0 33 ............................ TCGAGATCGTCGGCGCCCATGTTGATGCTGATG 2358200 28 100.0 34 ............................ TGTCATCGTGCCGACCGCGGCGAGCGCGTACGAC 2358262 28 100.0 33 ............................ ATCAGCGGCAGCAGGCCGTACGACGCCAGCGCG 2358323 28 100.0 33 ............................ GCGGGGGTTCGTTCACGACCGCCGAAGGGGTGA 2358384 28 100.0 33 ............................ GTCCCACCTACTGGTCCTCAAGCTAGATACTGA 2358445 28 100.0 33 ............................ CACCCCCACGCGACGGAGGTAGACCCGTGACCA 2358506 28 100.0 33 ............................ GAACTGGACGCGGGTGGGGATGCCGTACACGTA 2358567 28 100.0 33 ............................ GCGACGATCACGGCCGCGGCGTCGGCGTCTTGC 2358628 28 100.0 33 ............................ GATATGCGCCGCTACGACGATCCGCAGGGCGCG 2358689 28 100.0 33 ............................ GTAGGGCGGTCGGATGCCTCGCCGATCGCCCAG 2358750 28 100.0 33 ............................ CTACCCGAGCAGACCGCGACGATCGATGAGCTG 2358811 28 100.0 33 ............................ GCCCTGGGGGCTGCAGTTCAGGAGCTGCGAGGG 2358872 28 100.0 33 ............................ GCACCCATGCCACCAGCAAGGAAACCCAGCCGG 2358933 28 96.4 33 ................T........... TCGGTGGAGCGTGCGTCGTCCAGGGCCGTCCGG 2358994 28 100.0 33 ............................ GGGGTGCCGGCCGAGCTCGTGCCGCTCGGGGTG 2359055 28 100.0 33 ............................ CCGTGCCCGGTGTGCCGTACCTGGATCCCTACG 2359116 28 100.0 33 ............................ GGCTTCTTCGCCGTGCTGCTCGTTCCGGCGGGC 2359177 28 100.0 33 ............................ CGCCTTCGCGCCGGAGGCGATGTCGAGGTGGAT 2359238 28 96.4 33 ..............T............. AGCCGAGAGATCATTCCCGCCTGCCCTGTAGCC 2359299 28 100.0 33 ............................ ATCGTCTCGACCGCCGCGGTGACCGCAGCCAGC 2359360 28 100.0 33 ............................ CTCCGGAGCCAGGTACTACGGTGTCCACGTCGG 2359421 28 96.4 33 ...............A............ AGGTATTGACTTTTGCTGGAACAACATGGAACA 2359482 28 100.0 33 ............................ ACACTCGCCGACTGGTCGGCGTGGGATCCCAGG 2359543 28 100.0 33 ............................ CCCGTGGGACTTGTCGTGCTCGTCGCAGGTGGA 2359604 28 100.0 33 ............................ CCGGCGATCCTCGCGGCGAAGGCTCCGCTGGAG 2359665 28 100.0 33 ............................ CTTCCAGAAGGCGGCGCCCGGCAGCGTCAACGC 2359726 28 100.0 33 ............................ ACCTTAGGCGGCTTCGGTGGCTTCAGGCCCGGG 2359787 28 100.0 33 ............................ GGCACATATGAAGGTCCTGCCGAGGGCAGGACC 2359848 28 100.0 33 ............................ GATGCGCCGCATCGTGAGCCGTAGCCGGGACGC 2359909 28 100.0 33 ............................ TCGCCGCCCTCCCCTGTGTGGGTGGCGAGGAGG 2359970 28 100.0 33 ............................ CCGCGCGCCGGCGGCACCCAAAGCCGATCGGAC 2360031 28 100.0 33 ............................ GGTCTCCCAGCAGTAGTTGTAAGCGTAGAGCAG 2360092 28 100.0 33 ............................ CAGATGCGCAGCCTGCCGACGGTGCACCAGTAC 2360153 28 100.0 33 ............................ CGAGCCACCCGCTCCAATGATTCCCTACCGATA 2360214 28 100.0 33 ............................ CCTCACCGAGCAGCTCGGATAGTCCGACGACGC 2360275 28 100.0 33 ............................ GCCTCCGCGTACCTCTCCGAGCTGACCTCAAGA 2360336 28 100.0 33 ............................ GCCCAGCTCGGCGCTGAGCGCGTCGGCGAGCGC 2360397 28 100.0 33 ............................ CATCGGGCACCGCTCCGCGGCGGGAACGGGTGG 2360458 28 100.0 33 ............................ CCGGACGCGAAGTAGCGGACAACCGGCCACGTC 2360519 28 100.0 33 ............................ CGGGTCAGAGGTGTGATCGGCGTTCGGTGACAG 2360580 28 100.0 33 ............................ GATCGGTAGGGCGGCGGCGGCGGAACCCGGGTC 2360641 28 100.0 33 ............................ TGCGTTGCTGCGATTGCTGCCTATCGGGCGGAG 2360702 28 100.0 33 ............................ GAGAAGGCGGCCGGTGTGAAACCGGGCACGTTG 2360763 28 100.0 33 ............................ TCGCCGCCCACCGCGAGAAATGGACCGGAGCCG 2360824 28 100.0 33 ............................ CTGAGCCTTCACCATGCGACCACCTGCAGAAAG 2360885 28 100.0 33 ............................ ACGGCACAGATCGGTATGGCCGACAGTCTGATG 2360946 28 100.0 33 ............................ ACGCCTCGACGCCGGCCGGAGCGACCAGCGCGG 2361007 28 100.0 33 ............................ CCGGCTCGGCGGCTGGTGCTGCACCGCGCGCCA 2361068 28 100.0 33 ............................ ACCTCGACGAACCAGCCGAACGCCGGATACGTG 2361129 28 100.0 33 ............................ CCGGTGGTGCGGGGGCGTAGCGCGCCGATCCGG 2361190 28 100.0 33 ............................ GTTGACCCCGATTCCTGACCATTCCCGTTCTGT 2361251 28 100.0 33 ............................ GCAACGGCTCGCGCAGGCCCTCCACCAACAGGA 2361312 28 100.0 33 ............................ TTTGGGCACCGGTGCCTATGCGCTGGACCAGAG 2361373 28 100.0 33 ............................ GACCCACTCGGGGTCGTTCGCCTCGCACCAGGC 2361434 28 100.0 33 ............................ GCGTTCATCGCCGAGAGCAGCACAATGGTGCTC 2361495 28 100.0 33 ............................ CGCCGCCGAGGACACCCTCGCCGCCCCCCTCGG 2361556 28 100.0 33 ............................ CGCCAGCGTCATCGGCGGCCTCTTCGGGACCGC 2361617 28 100.0 33 ............................ GCCCGGCGGTCGGCTGGGTCCGCCGGGCATAAG 2361678 28 100.0 33 ............................ TCCGGGGTATCCGCGGCATACGGGGTACCCGGG 2361739 28 100.0 33 ............................ TTCCCCATCGCCGGGATCGGCGAGCTGGTTGTC 2361800 28 100.0 33 ............................ TCCGCCCGGCCCTCCCCGAACCGACAACCACGG 2361861 28 100.0 33 ............................ TACGTGAACCTCGAGGCTCGCATCGGCCACCGG 2361922 28 100.0 33 ............................ CAGCGACCGGAAACCGATCCCGCGCCGGCGGAG 2361983 28 100.0 43 ............................ TTCGTCGAGCACGATCGCCTGCGGCTTTATCCGGCGGACGAAC 2362054 28 100.0 33 ............................ CTGGGTACGGACGCGGCCGAGATGGGGGAGGCG 2362115 28 100.0 33 ............................ GATGGCGTCGGTGCCGTCCCGGCGTAGGAGCCG 2362176 28 100.0 33 ............................ ACCGTCTCGTTGTCGCCGATCTCGCGGGCGAGC 2362237 28 100.0 33 ............................ GTTGAGGTTCACACGGTCCCTCCGGGACGCGGA 2362298 28 100.0 33 ............................ CGTCGGTGATCAGAATGCGGTGCGGGATATGGC 2362359 28 100.0 33 ............................ TGCCACCGACCGCCTCTCTGCGCACGAAATGCA 2362420 28 100.0 33 ............................ GGCTCATGGCTCATCATCGACGGGTACGAAAAG 2362481 28 100.0 33 ............................ GCAACCGCGCCCCGTCGCGTACACGTCTGCGGG 2362542 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ =========================================== ================== 84 28 99.1 33 GGAAGATCCCCGCGCGGGCGGGGACGAC # Left flank : ACCTGCTCGCGCGTGATGCCATCGCCGACCCTGATCGACGGTAAGAGTCCCCCAGTCCAAACCGGCGGCTCGGACCTGGTCGGCCAGCGCGGCTTCCTTCATCTGGAACGCCGGGGTCGCCTTACCCACATCATGCAGTCCGCACAGAAGAGCGAACAGCGACCGCCCTCGGCCCTGGCTACAGTCATCGAGAAAACGCCGTACTACGGGCGAGAGGAAATTATCCCAGACAAGCTCCGCAACAGCCGCAGTGTCGAGCAGATGCCCGAGCAACAGGTGCATCGACTCTGGCGCCTTCGACTTCCCCCACACCACTGCCAACGCGTCATCCATGGACCACATCCCCCGAGTAGGGCCATCGAGCTCACTATCCAACCATGCGATTCGCAGCCCACCATCAACACCCCTCGACCGATCAGATGCCACGTCTACCCGAGGCCGACCCGCACTCCCAGGTGCCCGCCGTCCCTCATCCGGAACCGCAGGTCAGCTGTCCGCAA # Right flank : CACTTGCTGACCTGCACTTTCTCACAGGTAGGCCATCCAAATTTATCAGTGCGGGCGGGACGCGAAGGCATCTTGACAGGCAGCCAATAATGATCAACTATTGGTCGCGGCCTCTCGCTTGCCGGTGGTACAGATTTTGAATGGTCAGGGTCTGGTTACGGGGGTTGCGGATCCAGGGTCAGGTCGGTCTGGCCGAGGAAACCGGTGATGAGGTCGGGTCGGTACTGGATGCGTTTGAGCAGGGTCTTGATCGTGATGGTGAGCTGGTCGACGGTGACGCGGGTGTGGTTGCCCAGGTCGCGTTTGACATGCGCCCAGACCCCTTCAGTCGGTTTGCCGCGGTGCAGGTCGAGTTGGACAGGGCGGCGCTGACGCGCCGATTATCAGTGGGGAGGGGTTGCTGCGGCTGGTCGAGCTGGTTGATCAGCTACGGGCCCGTGAGCGGTGTGAAGGCGGTGCGTTGTGGACGGCACCGGAACAGACGATCTCCCCGGATCCCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAAGATCCCCGCGCGGGCGGGGACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.68 Confidence: LOW] # Array family : NA // Array 5 3598172-3598322 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP079862.1 Frankia sp. ArI3 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================ ================== 3598172 32 100.0 32 ................................ TAGTTGCCGGGTGCCGCGCCGGCGTAGTCGCC 3598236 32 100.0 23 ................................ CAACACCGCGACGAGGCACGTAC 3598291 32 68.8 0 .................G..T.CAGC..TTCG | ========== ====== ====== ====== ================================ ================================ ================== 3 32 89.6 28 GGGTCGCTGATCATCCCTAGAGGGATCGCAAC # Left flank : TGCGTCTGGGCTCGCCACCGGGCCGAGGCCGGCACCCGGACGTCGCCCATGCTGTCGTGCTCGATGCGGTATTCCTGCTCGCTCATGCGCCCGTTCTCCCGATGTTCCGTCGCCGTTGACCTGCATCTGACCAGCACCACACGCCGGTGCCCACCACCCGGCGAGAGGCCGTCTGGACAGCGGCCCCATCGCCCGACCCTAGGACATGTCGGGCGACTGGTGCCCGCGCCGCACGGGCGCATGGGAGCTCTCACACCGTCCCCCGCAAAGCGCCTCCGGCGCTTTGCGGGGACCCCTGGTATTGGGCGCCGTGCGGGTTTCGGTCAGATCGCCTTCGGCGAGCTTCCCTGGATGTGGGTGTCGGCGTGATCGGGCGAGTCTGGTGCGCTCATGGTTCGGCGGGTGGCGCGCGCCAGGCCCGGCACCCGTCCGCAACATCTCGGAACGGCCGACGGGATCGCAACCAGCCTGTCCCGCCCCGGCCGCGGCGACCGCCTCGA # Right flank : GCTAGTTCTTCTCCGGTGTTCGGTGACGGGGTGTGATGTCAGCCGACGCCCGCCTCGCCGCCGGGTGGCCCACCGGCACCGCCAGGCCGCCCCGCGAGGTAGGGGTGTGCATGGGAGCGGGGCTACCTGTTCCTTCTGGGGGGGACGAATCGGGCGCCGAACCCCCCCAGAAGGAACAGGCAGGCGCTTTCCCACGCATCCGCTGCCAACGCACGAGCCGTCGCCCGGTCTGCGACCCGACTTAGCCACACCGCCTGCTGTCACGGAACGTGATAGGAGGACGGGAAGCGGGCTGCTGAGGCGCTGCACTATGTGGGGAACCCGGGGGAGTGGCAGGTCGGGCCGGCTGGCACGGACGGGGAGCGGGGCGCCAATGAGAGACGCCCACTACCCTGCCGCGTGGCGTCGGTGCCACGGGGCGGGGCAGTGGGCGTCGTTGTTTGGGTGGTGCCGCTAGGAGACGGCGGTCTCGCGCTCGCGGGCGCGGATGTCGCGGCGCA # Questionable array : NO Score: 4.33 # Score Detail : 1:0, 2:3, 3:0, 4:0.48, 5:0, 6:0.25, 7:-0.49, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGTCGCTGATCATCCCTAGAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.60,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA //