Array 1 70365-72281 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIBNZ010000003.1 Klebsiella pneumoniae strain Ke33 contig3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 70365 29 100.0 32 ............................. CGCGGTCGGTATCCTGTCCGCGCCTCTGCAGA 70426 29 100.0 32 ............................. CCAGACAGAGCCGCCATGAATAGCGCCAAGAT 70487 29 100.0 32 ............................. GGGATTGGCCCCGACCAATAATCCAAAAGGGA 70548 29 100.0 32 ............................. ATACGTCTGTTACTTTGCTATTATTAGAAAGC 70609 29 100.0 32 ............................. CGTTTAACGCAGTGCGAAAAATTACGACACCA 70670 29 100.0 32 ............................. AACTGAATGTTCCAAATCCGGTTGGACGACCA 70731 29 100.0 32 ............................. CCGACTTGGGACGAGGATCCGGCGGAATGTCG 70792 29 100.0 32 ............................. TAATGGCAAAACCATGACCTGATCCGGGCGTC 70853 29 96.6 32 .........A................... CCTGAATCTTCACTTCGTCGATCATTCTGCGC 70914 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGTA 70975 29 100.0 32 ............................. GTAACGCAGACGGCGAACGTCGGATCCATTGG 71036 29 100.0 32 ............................. GACCAGAAAGCCTGGGCATTGTTCCGCTCATT 71097 29 100.0 32 ............................. CCCCCGGCCGCGTGGCCGATTGCCATTACCGC 71158 29 100.0 32 ............................. TATACAGTATTATCATAGCGAATTCCCATCGG 71219 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 71280 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 71341 29 100.0 32 ............................. AACGTAATTGGCTTACGGGGCGGTCGGCACAA 71402 29 100.0 32 ............................. TCGCCGCCTGTTTTTGTCTCTTTCCGGGTGAG 71463 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 71524 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 71585 29 100.0 32 ............................. TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 71646 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 71707 29 100.0 32 ............................. CTGCAGGTAAATGACTGGATGGGGGAAGAGGT 71768 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 71829 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 71890 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 71951 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 72012 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 72073 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 72134 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 72195 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 72253 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : CGTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 57787-58907 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIBNZ010000043.1 Klebsiella pneumoniae strain Ke33 contig43, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 57787 29 100.0 32 ............................. ATATCAATCTACCTACGATGGTGGTGGCTATC 57848 29 100.0 32 ............................. ATTCTGGAGCTCTCTTTCGTGTCCAGGCTGAT 57909 29 100.0 32 ............................. TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 57970 29 93.1 32 ............CA............... AGGTATTTGACCTCATCCAGAAAGGCACAGAC 58031 29 93.1 32 ............CA............... GCACCCTCACGGATACCTTTTGCACAGTGTTA 58092 29 100.0 32 ............................. TTACCAATGGGGAAAAATCTTCATTTGTAAAT 58153 29 89.7 25 .....T......CA............... AACATCAGTGGAAATCCACTGCGGC Deletion [58207] 58207 29 89.7 32 ......T.....CA............... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 58268 29 100.0 32 ............................. CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 58329 29 93.1 32 ............CA............... AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG 58390 29 100.0 32 ............................. TTAATGTTTTGTTAATTTATGAGTGTGGTGAT 58451 29 93.1 32 ............AC............... AGCAAATCGAAAATCCGGCTGTTTGAAAAATG C [58456] 58513 29 86.2 32 ............CT.A............C CATGAGCCTGCGCACTCTGACGCGCACCTGCT C [58518] 58575 29 93.1 32 ............CA............... TGAGGCTGCTGACGGAGAATTGGGACCTGTTC C [58580] 58637 29 89.7 32 ............CAC.............. CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 58698 29 93.1 31 ............C..A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 58758 29 86.2 32 ...C........CA............T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 58819 29 93.1 32 ............CT............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 58880 28 79.3 0 ..........A.CA..T.....-.....A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 93.3 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : CATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGGAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGA # Questionable array : NO Score: 5.36 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.46, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-28] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //