Array 1 567355-566318 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNGV01000001.1 Gardnerella vaginalis strain UMB1686 .21837_8_73.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================================================== ================== 567354 28 100.0 33 ............................ TATGCTCAACGCTCTCGCCGTTCTTAGCCATTG 567293 28 100.0 33 ............................ TGTTCGCAAGCCCGGCTGTAAACGTCACTTGCA 567232 28 100.0 33 ............................ TAAGAATCGCATTAGCAGCGCTGAAAACAATAT 567171 28 100.0 33 ............................ CCTCGCCGGAAACGTTTCTATAAGCTTGTGCAG 567110 28 100.0 33 ............................ TTGGCATATTCAAACGCCGGATGAGAAGATTCC 567049 28 100.0 33 ............................ CCCTTTCTGTAAGAGTTCATCGGCAAGCTTTCG 566988 28 100.0 33 ............................ TCGTGTCTCAGACTCTTGCAAAGCCTGCTGCAC 566927 28 100.0 33 ............................ TCGTCAGCCGGACGTGCTGATTGGTGACAAAGT 566866 28 100.0 33 ............................ TTGAGCATGAAACAGAACGCGCAAAGAGTGCAG 566805 28 100.0 33 ............................ TTGCGGAATTACTGGCGTGTTCCAAGTCCATGC 566744 28 100.0 33 ............................ CTGTATCGCGGGGTGCGCGAAAACAGTATAATC 566683 28 100.0 33 ............................ TCACCCGCCATTGCTATAGCTGACGGATTTTGT 566622 28 100.0 33 ............................ ACAAGTAATTTGTGTTGAGGATTTAAAAGTCGC 566561 28 100.0 33 ............................ TAAGGGGTTAGAAAAGCGAGCCACGGAATATAA 566500 27 89.3 33 ..............T...T..-...... TTTCAATAAAGTGCCCTATCACCGGGGGCACTA 566440 28 78.6 67 .......T.TA......A.T...A.... TTGAAGCGCAATAAGTAAATAAAGAGTCCCGAACAATCCAGGTGTCCGGGACTCACTATCCACTATA 566345 28 96.4 0 ..T......................... | ========== ====== ====== ====== ============================ =================================================================== ================== 17 28 97.9 35 GTCTTTCCCGCATACGCGGGGGTGATCC # Left flank : ATAATTCCAGATGAGATTACTGAGTTAACTGGTATTACGTGCGATATGCTTGAGTCGGATGGTGTAAGTTTAGACTTAGCATTAAAAGAATTTATCGATTTTATAGGGAAATTACCACTATTAGGATATAACGTATCGTTTGATATTGGATTTTTTAATTCGGCTTTATTCTCATTAGGTGAGAAACTCAGAAGCGCTTTTTCCGTTAATAAAGTTATTGATATTTCACGTTTTGTGAAGCATGATAGGAGGTTTTTGAAAAATTATCAGTTGAAGACGGTTCTTCAGGAGTACAACATTTCTGAGTCAGTTCCTCATAGAGCTCTCATAGATGCTAGGCTAACGGCGCGTCTTGTTTTTAACTTGAAAGGATTGTTAAAATTTATTTCATAAAAATAAAGTACTATTGTAATACTCTCTGTGATAATTTGAATTTGAAAAGTAAATGAGATTTGACTGTTTCTATTATAGAAATGGCCATTTTATTAGGATTTTTAAGT # Right flank : TATAAATATTGTGATACGATATAACCAACGTGGGAACCTCGGCAACCAGCTTTCAAGACTGGAACATTAGTCTGAGGAGCACCCCACGTTTTTCAGTTTTTGCAACGATTGAGAGAGAAAAGAAAAAAGAGTGGCGCGTCAATACAGCGTTCCCAGTTGTGGAAAATAAGAAAGGAGTGAGAAGCTGATGAACATGCAGAAAATTTATTATGACATGGTCGAAAAACTCCGGCCTTATGCTGAGCCATACATGGATAAGCTTTGCAAAGAAGCCGCTAATAATGCTACATGCGCAGGAGAGCCTTATGAAGCATTAGCGGATTACTAAGCCTTGCATGGGAACATCAAAATACTCCTCGTAAGCTTATTGTTGAAGCGTACAATCTTATTGACGATGACTATCTTGATTCATATAACGAAATGGCAGATAAACTAGAGCTTCCACGTCGTCAACATTCTGCAAATTACGACGAAGATGAATAAATCTTATATTAAAAAAA # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.12, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTTCCCGCATACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 655964-656575 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNGV01000001.1 Gardnerella vaginalis strain UMB1686 .21837_8_73.1, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 655964 36 100.0 28 .................................... TTGCTTGTAAGCTATTTGACGCACGATA 656028 36 100.0 28 .................................... GCAATCGGAAGCGTAAGAATCGCAAAGG 656092 36 97.2 28 ...........T........................ GCAATCGGAAGCGTAAGAATCGCAAAGG 656156 36 97.2 28 ...........T........................ AATGCACTTGCATTTTCAGCATATAAAG 656220 36 100.0 28 .................................... TCAGGACTCAAACCAGCCTGCAAAATAA 656284 36 100.0 28 .................................... GCTTTTGCGAAGCCACTAATGTAGTCGA 656348 36 100.0 28 .................................... GATTAACATTTTGGAGAAATAATGGCAG 656412 36 100.0 28 .................................... TTTCCACGTGCCGTCCCAGTAGATGCTT 656476 36 100.0 28 .................................... GAAATCACAGACTTTGAAGAACAGTTAA 656540 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 10 36 99.4 28 GTTGAGAATTAGCTCTTACCCCTCTTGATATACTTG # Left flank : CAAGACACGTCGATTAATAGACACACTTTTTTGCCGCTTACCCTAATTTGAAAACTAATAAATAAAAACGGGGAAGCTGGAAGCTTCCCCTGCAGTGATAATCATCAAATCTGCTGAGCAATCAAACTGGATAACAAGTCCAGTCTTATTGAGAATTAGCATTTACAATATATCATCTTTAAGAAATAGAAAACAAGTGATTTTTTAAGTTTGGTCAAAAGATTTAAAAAGTTAACATATCTATATAATCAATGAATAGTACAGTTGAACATATTATTACTTTCCATATTCAGGTGTTTTTGAAAAAAATACCTTACTGAGTGCAAGTATGTAGCTTTTACGTAAACAATATCCATATATTCATAATGGGAAGATTACTAAGATAGCGTTCCCATTATATTTTTTATAATAAGCAAATTATTTATGCGTTATATGCACACAATCATTCTCGTTATTTCAACTTACCAAATGTGTACGCAATAAAACTGTTACGCAAACAT # Right flank : GTTATAAGCTCAAGAGGGGCAAGATTTCAATCTTTTTAGGCATTTTTTCATTCAAAAAAGTGTAGCAATTTCAGGAGTTTCAGACGAAATATCCTGATGCAAGTTAGTATATCTAAGCGCAGAAGACCATTGATGGTCACTAATATGCAGTATTCTAACTTGACCAAATGGTGGTAAATTCTCTTTTATTGCTTTTACGGTCGAGCGATTACCAGATTGAGTTGGAGTGTAACGAACATACACAGAAAACTGCACCATTGCATATCCCATGTCTAACAACAAATTTCTAAAATCAGTAGCAGCTTTCCTTTGAATTTTTGTAGCTACAGGTAAATCAAACATTACTAGACACCACATTCCGCCACTATCCTTATCAATTTTCATAATCCTCCCTTGTATTCTGGAACCAAGAAATCTTTTGACTGCTTTTCCACATACATTCCATAAGCCTGTGCAATATCATTAAGAGCACTAGGCATAGTTGGCCCAACTCCGTTAAA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAGAATTAGCTCTTACCCCTCTTGATATACTTG # Alternate repeat : GTTGAGAATTATCTCTTACCCCTCTTGATATACTTG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //