Array 1 242441-243150 **** Predicted by CRISPRDetect 2.4 *** >NZ_WXEX01000001.1 Heliomicrobium gestii strain DSM 11169 Helio_gestii_assembly_contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 242441 37 100.0 35 ..................................... GTGAAGGGGATGATCGTCAACAATACGGTGCAGGA 242513 37 100.0 41 ..................................... ATGATTCAAAGCATCACACCTTCCCTGAAGACGCTGGGCTA 242591 37 100.0 38 ..................................... AAGAAGACCTCCAGAAGGGCTGCAAAGGGGTGATGGTA 242666 37 100.0 37 ..................................... TCGAGATCGAAATGTTTATCCAACGCGTCGACACCAA 242740 37 100.0 39 ..................................... CTGCCGAAGGCAAAGAGGAAGGCAGGGGAGGCGCGGAGC 242816 37 100.0 36 ..................................... GATGAGAGTGATACGGGCACATTTGGACCGGCATTT 242889 37 100.0 38 ..................................... CATTCTCTTCCTTCAGACGAGGTTCAAAATAGGCTTTT 242964 37 100.0 38 ..................................... ATGTCCGACGCCAGTGGACGCAGGAGATAGAGCGCTTT 243039 37 97.3 37 .........G........................... ACACCGGAAACGCCGGAAACTGGACATTTGCACTTGC 243113 37 97.3 0 .........G........................... | G [243138] ========== ====== ====== ====== ===================================== ========================================= ================== 10 37 99.5 38 GTTTCACTGAATGACCCGATATGTAGGGGACTGAAAC # Left flank : CATGTCGACGGTGATTGAGGGGGAACTGGACCTTGTGGTCGATGTCATCCGGAAGATGCACGAGGTTCCCTTTGCCGCCGGCGCATTGCGGGTGTCGACAACCATTCGTATCGACGATCGCCGCGATAAACCGCTGTCCATGGAGGGGAAAGTGCGGTCGGTGGAGCAGAAGTTGGCTGAGTAACATATAAAGTGTTTTCTGTATAATGCAGGATTGATGGTAGAATGGATACGGTGGTGCGTTTTGTTTTTTTCGTAGCGCCGATAGCCGTTGTAATAGGAGCATACAGGAGCCGGAATTTCGTTGCTTTTTCGTTATAACGGTTTGATTCGCCCCAGCAGGGCACAATAAGAGTAAAGTTTCCAAACTATGGTGTTTTCGCAAGGGGTGGGGGTTTTCGTGCAGAAGTCCGCCCTTCGAAAAAATCGGTGGCTTGGGTGGAGGTGAAGAGGCTCAGAGGGCTTGATTTAGCTGGGCTTCTTCGACTATACCCCGTGCG # Right flank : CAAAAAATCATGTATAACTCATGACGATTGGCGGATCACAATCAAAAAAGGACATTTTTGGGCGTGACAGAAAATGACTATTACCGACATACCGGGGGTAAACCAGCTACTGCAACAGCTAGTAAAAAAATCCGAAATTGAACAGATAATTCTCTTTGGCTCACGAGCCCGAGGCGATAACGAGGAACGCTCTGACATCGACTTGGCTATTGCGGCTCCGAATGTCACGCTACATCAATGGTTCGATATAATGGATCTGGTTGAAGAGGCAGACACCCTGTACTCGTTCGATATTATCCGTTATGAAGAGGTATCTTCCACGTTAAAAGATAGAATTGCCATTGAGGGGAAAGTCTTATTTCGGCGGGGAGCAAAAAGCGATAATAAGCCGATAAGGTAAACGATAGTCAGAAGGGAAATGTAAAAAAATAGCGTTATTCTCAATAGAATGTAGCTTCGCTTGTGAGGTTAATATGGTGTTATCGTTTTTTCGGGTCGCT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCACTGAATGACCCGATATGTAGGGGACTGAAAC # Alternate repeat : GTTTCACTGGATGACCCGATATGTAGGGGACTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 261310-262613 **** Predicted by CRISPRDetect 2.4 *** >NZ_WXEX01000001.1 Heliomicrobium gestii strain DSM 11169 Helio_gestii_assembly_contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 261310 37 100.0 38 ..................................... TAGACAAAACCCTTATCGCGCCAGCCGAACCGGTCAGT 261385 37 100.0 38 ..................................... AGCCTGGAACAAGTAAAAAGGTGGCTGCAACTCCCAAG 261460 37 100.0 37 ..................................... GGGAGATAGGTATAGCGCCCATCTCCCACAGGTGCGT 261534 37 100.0 36 ..................................... GCGGCTGCACGGCCAGCGTGAAGCGGATGGTCGTCT 261607 37 100.0 38 ..................................... GAGGCAAAGGACGAAACCAGCACGGCCGCCGTGATGGC 261682 37 100.0 37 ..................................... CTTTACTAAGCACGGTGTAGGTTTCTCCGTGAATCGT 261756 37 100.0 37 ..................................... ATGAAAGCCTCAACCGCTACCGGACTATCGCCGCAGA 261830 37 100.0 38 ..................................... AACGCCGATATTCATTTCTCGCGCCGCCTGCTCCTGGG 261905 37 100.0 38 ..................................... TGATGCGGTCGAGGATAGCGAGGTTGGCTTCCCGCAGT 261980 37 100.0 38 ..................................... TCCCAGAGAATCTAGGAGCTATTATAGACGCCTGGGAA 262055 37 100.0 37 ..................................... GATTTTATGTCAGCGTGACCAATATGATTTGATGCTT 262129 37 100.0 39 ..................................... AGCGTTTCGCAAAGTTCTCTGTTCGTCGGCGGCTGTCGA 262205 37 100.0 38 ..................................... GGAACACGGATTTCGTCAGGCGGACAATTTCCGTACCG 262280 37 100.0 36 ..................................... ACTGTTTACCTTGTGCAGCTTTACCGTGCCTTTGCC 262353 37 100.0 38 ..................................... GTTCTGTCCCCGGAAGCATCCACCTGGCCGAGATAGTC 262428 37 100.0 37 ..................................... GTAACTTGGCAAACATGGCCCTTCGCCAGCAGCGGTA 262502 37 100.0 38 ..................................... GAGCCGCAGTAAACTGCGCCGCCTGCTCGCCGGTCACG 262577 37 94.6 0 ...................................CA | ========== ====== ====== ====== ===================================== ======================================= ================== 18 37 99.7 38 GTTTCACCGAATGACCCGATATGTAGGGGACTGAAAC # Left flank : TCAACCGATGATTGTGGAGGTGAAGTTTGGCGAGCCCCGCGATTTTCACCGGTTGGCTACGGCTGGGTATGCCCTCGTGATGGAGGCGGTCTATGAGCATCCCGTCGATGTGGGCTGTCTCGTCTATGCAACTTTTAAGGGGGACCGGGTAATCATCCGGCGGGATATCCACTTGATCGACGACGAACTCCGCCAATGGTTTGTTGAGGCGCGGGATGAGAAGGCCCGGATGATTTATGAGGAGATCGATCCAGGGCTCGCCAAGGATTGTCCGCAAGCCTGTCCTTTTGCCAGTCGTTGTTCGTAACAGAAATCGGCGATTGTTGCCGGGCGCGCGCTGGGGTACAATAGAATTGATGGTTTCCAAACTATGGTGTTTTCGCAAAGGGTAGGGGGTTTCGTGCAGAAGTCGACCTTTCGAAAAAATGGGTGGTTTTTATGGAGGTGATGAGGCTGGGAAGGCCTGATTTTAGAGGCTTTTTTCGGCCTAACCCCGTGCG # Right flank : AGGGGCGAGCCCCTTGTGCCCAAAGACACATAAATTCCTGCCAGTAAAAAGGGAATCCCCCCAACGCCGTCGAACCCTTCAACCAATATGGTTGTAGGAAGGTGATTGGGGTGCTGAAAAGAGGGATTCTGCTCGCTCTTGCGTTTTTGCTCTCCCTTTCCCTTGTCGGTTGCGGCGGTCCGTCGAGCGGTGGATCGAAGTCTCTGATCGTGCAGGACAATGGCGCTGGTCAGCAGGCCGAGACCCAGAAGGCGACGCCGAAGAAAAAAATTGCCCTCGTCATGAAGACCCTGACCAATCCCTTCTTTATAGAGATGGAAAAAGGAGCGCGTCGCGCCGAAAATGAGCTGGGCGTCAACCTGATCGTCAAGGTGGGGGCCAAGGAAACCTCCATCGCGCAGCAGATCGCCATCGTCGATGAACTCATCGGCGACAAGGTCGACGCCATCGTCATCGCTCCCGGCAGTTCCACTGAACTCATCCCGGTCCTCAAAAAGGCC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCACCGAATGACCCGATATGTAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 84039-82855 **** Predicted by CRISPRDetect 2.4 *** >NZ_WXEX01000008.1 Heliomicrobium gestii strain DSM 11169 Helio_gestii_assembly_contig_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 84038 37 100.0 34 ..................................... ACGGCGTTGTAGCGGATTGTTTCGTCATAAATCC 83967 37 100.0 35 ..................................... CTCATCGATCCAGCAGTCGAACCAGTCTCTTGCGT 83895 37 100.0 34 ..................................... CTGGGTGAGCTGGAAAAGGACTTTCAGCGTGAAT 83824 37 100.0 34 ..................................... CGGGTAGCGACGGTATATTTTCCTGTCATTTTGG 83753 37 100.0 34 ..................................... ATCAATGACAACTAAGCATTGACTTTCCTTCTTT 83682 37 100.0 34 ..................................... ACCGCCTCCGCGACAACCTTCTCCTTCCGCCGCT 83611 37 100.0 35 ..................................... TTTGTGGAGAAAGATGCACTATCAAACGCCAGAAG 83539 37 97.3 38 ...........................C......... AGTTGGGTGTCGGGCTCTTTGTCGGTGCCAGCGATGAC 83464 37 94.6 34 A...............G.................... AAGGTTCACCAGGTGTATGCCCGGCAGAACGCGG 83393 37 91.9 36 .T............A.G.................... GAGACGGCCACAGGATGTCGCGTGGACCTGGAGCGC 83320 37 89.2 37 .T............A.G........T........... TTGATGCAGGAGCGCCTGTACATGGGGAGTGAAGAAC 83246 37 89.2 34 .T..........C...G...............C.... GTGACCTGCTGGGCGAATATCTCTGCACCCTAGC 83175 37 94.6 34 ..................A.........A........ TTTGAGTGGACGATACTGCATGATGGTCTGCATG 83104 37 89.2 35 A........A.....TG.................... ATGACATGGGGGTACATGGAGTTAACGTCTACATA 83032 37 89.2 35 .T..............G........T..T........ TTTTTTGACGGGCGCGGACTGCGGCAAGTAAATGT 82960 37 86.5 33 .T.C............G...........T.....G.. ATGGCCAGGGCGTCGGTCAGGTGGGTTTTCCGA 82890 36 83.8 0 .T....G..........T..-.......A.....G.. | ========== ====== ====== ====== ===================================== ====================================== ================== 17 37 94.4 35 GATGCAACCGCATCGAAAGATGCGGCATCATTGAAGC # Left flank : AGACATACGAACTGAGATAGGCGCGAATCGATTAGCCATCGAAGCATTACCGTTATTTCCAGTAATACCGGGAATGCGCTATTGTCTCACTACAGGTTTCTCGCGCCGAAAAAATGAGATTTGGTTTACCTGGCCAGTTTGGGAGGTGCCTATCAACATCCCCGTATGCAGAACACTACTGGCTATGAAGCATCTCCAAAATGAAGAGCCTTTACTAGAAAACCTTCAGGAGATAGGAGTTGTGGAAGTCTTTCGTAGTCAGCGGATTTCTGTTGGCCTATTTAAGTACACGAACTTTACTCCTGCTTGTTCAATGTAAGAAGCGAACCAAAAGTGATCATAAAAACCCTAGGAGGTTCGCGAAAGATGAAAAAGGCAGTAAATACTAGGGTTTCGGAACTTGGGAACTATGAACCAGTACTCTTAAATGAAGGAATTCTGTGGGGTTCGCGCAAATGGGGGCTGAATTCCTTGAATCATAAGGGTTTATCAGCCATAGC # Right flank : ATGATGATTTTGTCAACGTAAAAGTGGTCCACAGTGATCACGAAAAAAGTGATCCACTATGCCTTTCTTGGTTTACATTAATGTTTATTTATGGAAATATTGTGGCCTACGTTTCCTTGTGTGTCTATATGTAAACTCTGACATCCCATGGGTGTCGGCCCTGTCAGAGGATGCTTTTGGCGTTGCTTTGGAGCAAGGCCGACCCGGAGGCCCGGTAGGGCCGCAGGGTCGGAACCGTCTCTTCACTTATGCATTGGGTAGGCTTTCGAGTCGCTTCATACTCTGCCGGAAACGGTACGACTCGCCGTTCATGAGCAGGATGTGGGCGTGGTGGGTCAGGCGATCCAGAAAGGCCGCGGTTAACTTGTCATTGCCAAAGATCTGGGTCCATTCGGCAAACTCCAGGTTGCTGGTCACCAGGAGACTGGCTCGCTCGTAGAAGGCGGAACAGAACTGAAAGAGCAGTTCCGCCCCTGTCTTGCTGAAGGGAATGTATCCCA # Questionable array : NO Score: 2.62 # Score Detail : 1:0, 2:0, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.64, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGCAACCGCATCGAAAGATGCGGCATCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.00,-12.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [25-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 1 5226-5413 **** Predicted by CRISPRDetect 2.4 *** >NZ_WXEX01000009.1 Heliomicrobium gestii strain DSM 11169 Helio_gestii_assembly_contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 5226 37 100.0 41 ..................................... AGAATTCAGTCAGTACGCCATTCCACTCTTCGCCTTTATAC 5304 37 100.0 36 ..................................... GCGGATGCGCGGCACGTTCTCGATCATAATCACGCT 5377 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 3 37 100.0 44 GTCTCAGAAGAGGTTAATTCCCGTAGGGAATTGAAAT # Left flank : GCGATGCTGATCGACATCGTCGTCGCCGAGCATTACCGAAAAAACGGATTGGGTCGTGAGATGATGGAGCGGATCGTCCACCATCCCGAACTGGAATCGGTGTCTATCTTTGAACTCTTCTGTGCGCCGGAACTGACGCCCTTTTATGAGAAGTGGGGATTTGTTGAGCGGTTGGGGAAGGTTACCTGTATGCGGAGGAGATTGGAGCAAAAAATATAAATATCGTCTTTGATTTACCCTTTTGTTCTATCTTAGGGATGGACTGGAAAGTAGAATTATGCTAGCTTAAGTGTGAGAGCCATAAAGAGGACCGCTATTTTTTGGGTTTTGCTGCGCGAGCGACGATGGTCGGCAGAAAACCCGGGGGTCGCTCGATCCGATAAAATCAAGGGTTTGCGGGTGATCGAGTGGTTACGTGCGGGTTCGTTTGGGAGCAATAGTGGCCTCGCTCGCAAACGGCGGCGCGAGGCCTTGTGGGACAAGGGGGAGAGAGGGGCGCA # Right flank : TACTAGACGATACCCGCGTCGAAACCCACCAAATCGACCCTTCGCGAATTTAATTTGCTCCGAGCGGGAAGGGACACGTAGTGGGCGTAATATAAAAATCAAGCCACCTGAAAAAAACAGTATTTCAAAAGAAAGATGCATAAATTTATTTTTTGGAAAAGGGGGCTGTATTATGGGAGCCACGGGCAAATTATTGGGAACGATGATAAGTATGGTTTTATTATTAACGTCAACAAATCCGGTTTCCGCTGAGACAATCAACGACATTAAAATAGTTTTATATGGAGAAGAATTAAAAACAAACGATTTTTCTATAAATAAAGATACGAATACTATTTATATCAAAAAGAAAAAAACAGTATTAGGAGAGACTGCTGATAAAAAAATATTATTGTACTCAGAAACACAGGGGAACGGAAATTTTTACGGAATAACATTAGAAGATAGTACCAATAAGAACAGAAAATATTTTGAGTGGAGTAATATTTGCAATGCTACTT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGAAGAGGTTAATTCCCGTAGGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.50,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA // Array 1 261336-260718 **** Predicted by CRISPRDetect 2.4 *** >NZ_WXEX01000002.1 Heliomicrobium gestii strain DSM 11169 Helio_gestii_assembly_contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 261335 37 100.0 36 ..................................... GGGCCGCTGGGACACGGATCGGCGCTCATCCGCCCG 261262 37 100.0 33 ..................................... GCTCCTCGTCGACCTTTGCGTACTCGGCAATCA 261192 37 100.0 34 ..................................... GGCTGAAGCCCGTTTCATGACAACGCCATTGTGT 261121 37 100.0 37 ..................................... GCATTTTCAGTGTTACCCGAAAATGCCTTGCCATTCC 261047 37 100.0 34 ..................................... GGTTTGACAGGCAAGGTTACGAATTCCCCATAAG 260976 37 100.0 38 ..................................... AACGGTGCAGGAGTCGAAAAATGCGCCAGGGTCATCGG 260901 37 100.0 37 ..................................... TTTTCGTTTGCCATGGTGACGTTTTCACCTGACCCTT 260827 37 97.3 37 ...........T......................... AAAGAGAGTGGAAATTTTTATCCAATATCTCAGTGCG 260753 36 73.0 0 ...-......C.............T.A.G..GTT.CG | ========== ====== ====== ====== ===================================== ====================================== ================== 9 37 96.7 36 GTAACAGGAAACGATAATTCCCGTAGGGAATTGAAAT # Left flank : AAGGTGTTCAAAACATTGAAAGATTATGGGACCCATGTGCAAGAGAGCGTCTTCGAGGTGGTGCTGATGACGGAGGATTATGTGGAACTGCGGCACAAATTGCTCCGGCGCATCCACCGCGATGAGGACAGCGTGATCTTTTACCGCCAATGCCGCGCCTGTGAACACGATGTGGAGCGGTTGGGGCGGAAGGTGGAATTGGTCGGGATCGGGGATATCGTGTTGTAAAGGGGGATGGACTGGAAGGGGTTGGTGTGGTAGTTTTATTATGGGGATAGCTGTTCAGCGTCAATGGTGACGCGAGGTCATGGTGCCGCTACTTGGATTTTCCCGCGCGAGCGACGCAGGTCGGCAGAAATGCCGGGAGTGTCTCGATCCGATGAGATCAAGGGTTGGATGGGTTTTGAGAGGGGAGAAGGCGATGAAAAGGGGGACGTTTTTGGCGTCGCTCGCAAAGGGGGGCTGGAGGGCTTGTGGGAGAAGGGCTGAAAGGGGGCGCA # Right flank : GGACGCACCCGAAGCAAAGGTAAAGAACAATCAACCCTCGTCAAAAATTCGACGAGGGTTGTAAATTTTAGAAGGAAATGTATGCATTTTGTAGAATAATCAGAAACATAATCTGGTTTCCCCATAAAGACAACAAACTGAAACGAATCCCCTGTCTTGCATTAATCAAGGAAGGAGGATTTTATTATGGACAAAAAAACATATCAGACGATTCTCCTTGCTGGTCTCTTACACGACATCGGTAAGTTTTTGCAGAGAAGTGGATATCCAAAACCGAGTAACGGTGGGAGACACCCTCATTATTCTGCCGATTTTATTAAAAAACACTCGGAACGGCTCACTCCCTATGCCGACCCTAAGTTATTGACAGAGCTCGTCCAACGCCATCATGAATCAGACAAATACCCTGCCGACTTACAGGTGAAAAATGCTACTGAGGCGATACAGCCATTGGCCCAATTGATCAGCCGTGCAGACAATTATTCGTCTTACGAGCGGGG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:0, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAACAGGAAACGATAATTCCCGTAGGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 2 269353-267910 **** Predicted by CRISPRDetect 2.4 *** >NZ_WXEX01000002.1 Heliomicrobium gestii strain DSM 11169 Helio_gestii_assembly_contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 269352 37 100.0 34 ..................................... TTGTAAAGCGTAAACATTTCGGCGGCGTGGTCTA 269281 37 100.0 39 ..................................... TCGGTGGTGAAACGCGCGCGAATTTGAGACAATTTCTCC 269205 37 100.0 37 ..................................... ACGATCACGTGCCACCAGCCGGAGAGGAAAACGCTGC 269131 37 100.0 38 ..................................... GATAGCAGTAACCTTCTGCTAAACAAAAGGGCACTAAC 269056 37 100.0 38 ..................................... TTCATCCTCTTGAGGTCGGCGGCGAACATCATCAGGCT 268981 37 100.0 34 ..................................... ACTACTTTGGCGGCGTCTCCGTAGACATCCGAAA 268910 37 100.0 40 ..................................... GCCTTGATAAGGTGCTGTCAGATCAGGTTTTGAAGAACAG 268833 37 100.0 34 ..................................... GCCACCCCCGGAAACTCCGACCACTCCCGTCCAT 268762 37 100.0 35 ..................................... CTCGTACTTGGGCAATATCTCCCGCAGCCCTTCTT 268690 37 100.0 38 ..................................... GCAATTTAAGACCATGCTGAAGGATATTATGGCTAAAA 268615 37 100.0 36 ..................................... TGGCACGTGAAAAAGATCTTGCCTTCGTTGCTGCCG 268542 37 100.0 39 ..................................... TAAGGCACAATATCCGCGCACCCATGCACCCGGCACAGG 268466 37 100.0 39 ..................................... AACACTGCCCGCCCGGTCGACTGCACCGCACCGCTTCGA 268390 37 97.3 38 .....................T............... GTGGCCACAAAGATTTTGTTGAACAGTTGAGCGACGTA 268315 37 100.0 38 ..................................... GTACCGAACGAATAGTTAGGTGGAGAAGGAGGAGCAGG 268240 37 100.0 35 ..................................... CCCGCGCCTTGCAGGCCTCCTCCCACTGCTTCACC 268168 37 100.0 38 ..................................... TCAACAAACTGAATAATGTCATTAAACGCAAAGTGTCT 268093 37 91.9 35 ...C...A..A.......................... ACGAGGTTGGAATTGCGGGCTTCGTTGATGATTGA 268021 37 83.8 37 ...C..AA..A...................A.A.... TTGTTAAGTGTAAATTGATAAGCGATGTCGTTGTTTC 267947 37 89.2 0 ..........A...C..............T..A.... | T [267936] ========== ====== ====== ====== ===================================== ======================================== ================== 20 37 98.1 37 GTATCAGGAACCGATAATTCCCGTAGGGAATTGAAAT # Left flank : GGGGTTAGGCTGGAGAGGTTGTACTCAAATAGCTAGATAAACCTCGGCATAAGTTTTTGTAGGAGCGCACAGTTTTTTCTATAGCTGGTTCCGGAATTTAGAGTTTTTGAATGGATGTAGGCAGGAATTATGGAAGAAATTACAGAATGGATGAAAAGCATGATCAGCGATACTGTTCATCCTCGGCACATGGATCATCTGCACATTCGTGCGATAGCTCGGACGGTGACCGCTGTAAATTTGCGTGAGTGGAGCGAATCGATAGGGACGCATATTCAGCGGGAATGCTATGGCAACGAAGTCTTCCCGTTAGAGGTCCATTAGAGATCTCCTCGCGAGCGACGCAGGTCGGCAGAAAACCCCGGTGTCGCTCGATCCGATAAAATCAAGGGTTAGCTGGGGTTAGTCAGGTGGAAAAGCAGTGAATGAAGAGAGAAAAACGGACTCGCTCGCGAAGGGGGTTGGGAAGGCTTGCGGGATAAGGGCTAGAAAGCCCCGCA # Right flank : CGCAAGATATTTAACCCCAAAGTGTGCACCCTATACATTGACAACATAAAGGACATATCTAAACTTCCATGAAACACTTAAATACAAGAAGGAAGATGTAACCCCTGCAATGTTGCTCAGCATAACAGAAAAGCCATTTGCTTTAATAGCGAATACTTTCAATTCAGCGCGACATATTAAGGTGTATAAAAATCAATAAATAGTATCTTTTAGTAAATTGCAAGTTTAGGAGGCAAAATTCATGCCACAAGTTAACATAGGAAACATAGTTACTTTAGATGTAGCAAAAAAAGAGGAACTACCAAAATTTAAAAGAGACTTACAGGAAGCGTTTGCGGTATCAGTGGTTGAAACATTTGGTTCTGACTTAGATGAACCCATTCCTTCTGATAAAGATATAGAAGAATCGTTCAATGCCGCTGGAGCTGTTATCTATCATATACTCTCAAATGGAAAAAAGGCAGGCGGTGCTGTACTTATTATCGATGAAATGACACAGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATCAGGAACCGATAATTCCCGTAGGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 3 271685-270451 **** Predicted by CRISPRDetect 2.4 *** >NZ_WXEX01000002.1 Heliomicrobium gestii strain DSM 11169 Helio_gestii_assembly_contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 271684 37 100.0 40 ..................................... AGATCGTAGTAACTTCCAGAAGGGATAGATAACCACGTAG 271607 37 100.0 36 ..................................... TATCGAAGAGGCAGGGCGCAGAATCGCTCTAGCCGT 271534 37 100.0 36 ..................................... GCCCACTGTGTCCCATGACAGTCGCCTCCTCTTTCT 271461 37 100.0 40 ..................................... CATTCGGTGTGCGCAGTCAGAATAACGAGATTAAGTTTGC 271384 37 100.0 37 ..................................... TCGCTGTCACGATGGCCCGAAGTAGCTGATGCGCTTC 271310 37 100.0 37 ..................................... AGGAATTGGGAGGTGTTCCGATTGACGAACTAGTCAA 271236 37 100.0 41 ..................................... GATACCGGCAGTCACACCCCAACACAGCCCGGTTCACCAAG 271158 37 100.0 37 ..................................... ACGTAGGAAATTGCCCCTGCGTTGCAGTACCGGTGGT 271084 37 100.0 37 ..................................... TTTTTAAACGTTGATTTGCCATGTTGCGGCCGAGTTT 271010 37 100.0 37 ..................................... GCTGTCTTGCGAAGGGCCAGGGCGACAGCTTGATCCT 270936 37 100.0 39 ..................................... CCATGCCGGGTCTAGCACCAGCCACCCAGTAATCACCGA 270860 37 97.3 36 ..........................T.......... CCTGTGGCGCCCGTCCCGGATGTGACGCCGGTGAAC 270787 37 100.0 41 ..................................... TTTTTGTTGTATTCACCATCCCAATTTACAAAGTCTTCTCC 270709 37 100.0 38 ..................................... GCCCTTGGCTTATAATCAGCAGCCCGCCGCATCAATGG 270634 37 100.0 37 ..................................... GTCGGCGCTGGCCAACCCATGAAAGACATGGTGGATT 270560 37 94.6 36 ................................A..T. CCACTCAAGACAATCCCGACATTCTTCACAAACCGT 270487 37 94.6 0 .....................T.T............. | ========== ====== ====== ====== ===================================== ========================================= ================== 17 37 99.2 38 GTCTCAGAAGACGATAATTCCCGCAGGGAATTGAAAT # Left flank : TTATTCGCAACGGGATAAGAACGGGTAGTTTTGTAAATCACGTATGTTTATAATAAAAACAGGCTAGGGAATCTCTCCTTAGCCTGTTTTTCTATCGTTAGCTCTGGCAATTACGGTTTTGCTTAGGCATAAGCAGGAATTGTGGAAGAATCTATAGAAGGGATAAAAAACTTAGTCGGGGTTCCATTTCGTCGTTTAGATATCATAGGAATGGCCCGGCTTATCGATAACCTATGTAATTTTGAGTGAATCGGTCAAACGATAGAGAAGCATGTACAGCGGGAACACTACGCCAGCAAGGTCTTCCTAATAGCGGCGAATCGGCGATCTTCTCGCGAGCGACGCAGGTCGGTAGAAAACCCTGGTGTCGCTCGATCCGATGAAATCAAGGGTTTGCGAGGGTCAAGGCGGTGAAAAGACAATGAATTGTGGGCTAAAATCGGACTCGCTCGCGAAAGTGGCCCGGAAGGCTTGTGGGATAAGGGCTAGAAGGGCGCGCA # Right flank : GCGGACTCATGTTTACCGCAGGGATTCGAAATGAATAAGGATGGATGGGATTCGTCAGGTGTGCCTAACGGTGACAGGAAGCAATAATTCCTGCGGGTACATGCTATCTTTAACAGGCTTAGTGTAAGGGTAAGTTAGATTTAACTAAACATGATATACTTGAAACAGCCGAACAGTTTAAATGCCTTAAGGGGGGCTTTCCATGAACGATAACAAGTTCCAAAGCCTCGTGCTTCAGGCGCTACGGGATTTAAAAGATGGGCAGCAGCGTCTTAAAAGCGAAATACGCGGTGAAATAAATTCACTCAAGCAAGAAATGAGTCGTCGATTTGATCGCCTGGAACGGAGCCAGGAAAATAATATAAAGGGGATGCTCAAAACGATAAATCGTAAGATAGACGATGTGCAGGAAGACCAACGGTCTACTACTGCCATTATTGGGACATGAAGTAAAATTACGCTCCCTTTCCCGACGGCGTGTGTGAAGTGTGGAGAAGGTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGAAGACGATAATTCCCGCAGGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA //