Array 1 1234592-1234007 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CAAGZX010000001.1 Klebsiella pneumoniae strain 5012STDY7626365, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                          	Insertion/Deletion
==========	======	======	======	============================	=========================================	==================
   1234591	    28	 100.0	    33	............................	TATTTTTTCGCCAGCTTGTCGTAGGTGCCGTCC        	
   1234530	    28	 100.0	    33	............................	GAGTAAAGTTGTTTTTTTGCTTAATCAGATTTC        	
   1234469	    28	 100.0	    33	............................	CACCTGCGGGACTACTTCATGGAGCGCGTCCGC        	
   1234408	    28	 100.0	    33	............................	CAAACGGGGGTGATCCATGATACTAAGCAAATC        	
   1234347	    28	 100.0	    33	............................	CGAGGAAATGATCGCCATTGACCGTAAGGCGAT        	
   1234286	    28	 100.0	    33	............................	CGATGCGCAGTTTTTGGAGACGCGAAAATTCCA        	
   1234225	    28	 100.0	    33	............................	TTTACTCGAAGGTTAAGCGGGCGTAATATCCTC        	
   1234164	    28	 100.0	    33	............................	CGGTCAGCACTTCCAGAAAGGCGGATATTCCAC        	
   1234103	    28	 100.0	    41	............................	TGGAATCCACGACGCGCCGTACCAGCGCGGGCATTCGTTCT	
   1234034	    28	  89.3	     0	......A...T.T...............	|                                        	
==========	======	======	======	============================	=========================================	==================
        10	    28	  98.9	    34	GTCTTCCCCACGCACGTGGGGGTGTTTC	                                         	       

# Left flank :   TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTCCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCACAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT
# Right flank :  TTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGGAGAGGTAGGAATATTTTATTGCGAAAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTAACACCAGCAGGTTCGCTAAGAGAAGCGTGTATACATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCCTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCCTATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGCTACAAATTGGCTG

# Questionable array : NO	 Score: 6.21
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCTTCCCCACGCACGTGGGGGTGTTTC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [8,2] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-10.80,-11.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [3-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,5.55   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
//


Array 2 1243922-1243345 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CAAGZX010000001.1 Klebsiella pneumoniae strain 5012STDY7626365, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                  	Insertion/Deletion
==========	======	======	======	============================	=================================	==================
   1243921	    28	 100.0	    33	............................	CAATTTTATGTGTATATAATTATTTTTTGTTCT	
   1243860	    28	 100.0	    33	............................	TTTACCATAGATACCGTTAGTAACTTCACTTTG	
   1243799	    28	 100.0	    33	............................	CGACTGGATCACGTACCTGATCAGCGTAGTGGT	
   1243738	    28	 100.0	    33	............................	TTACCAGAAAAAAGCCCTCGGACAAAAAATATC	
   1243677	    28	 100.0	    33	............................	CGATCCCGGTTCCTGATGCCGTCGTTGTGCCGG	
   1243616	    28	 100.0	    33	............................	TAAATTCCATACCCGGTGGACTGATGCACCTCG	
   1243555	    28	 100.0	    33	............................	TGCAGGACGAGCAGGCAGTAAAGCGCCAGGCGG	
   1243494	    28	 100.0	    33	............................	CGAGTTAACGCTTGAACAAGCGATTCAGCATAC	
   1243433	    28	 100.0	    33	............................	TTCATCACGTGTGAGCGGATTTGGCTCTATCCT	
   1243372	    28	  89.3	     0	.............A.....A.......T	|                                	
==========	======	======	======	============================	=================================	==================
        10	    28	  98.9	    33	GTCTTCCCCACATGCGTGGGGGTGTTTC	                                 	       

# Left flank :   TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTTGACGGCGCCGCGCAGGATAATAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTGATATGGGGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAACTATCGTAAATCTGGTATTTTAATACGCCGCTAGACACAATATGCTGGT
# Right flank :  CGCCTTTCAAGTGTCGACAAGTAACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGATATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTCAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGGTATTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATGT

# Questionable array : NO	 Score: 6.21
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCTTCCCCACATGCGTGGGGGTGTTTC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [9,2] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-10.80,-11.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [3-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,5.28   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
//