Array 1 1378-439 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJXE01000064.1 Flavobacterium columnare NBRC 100251 = ATCC 23463 strain NBRC 100251 sequence064, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1377 36 100.0 30 .................................... TTCATTTGTCTAAAAATCTCTATATTTTTA 1311 36 100.0 30 .................................... TATGAAATCAGGTTTAATATTAGACACTGT 1245 36 100.0 29 .................................... CTTCTCGTGCTTTCACTTTCACTTTCTTA 1180 36 100.0 30 .................................... TCACATTTACGGGACCAGCTGTCAGGGTCT 1114 36 100.0 30 .................................... TATTGATTGCGTCTCTTTTGTGTTCGTGTT 1048 36 100.0 29 .................................... TCACGTCGTTAGGTTGATTATTAATACAT 983 36 100.0 30 .................................... GATGTTTTTAATTTGTTTTATTGTATATTT 917 36 100.0 30 .................................... TCTTCCACCGACAATAGTCTAAATAAATCT 851 36 100.0 30 .................................... TGAAATTTCTTTTACCGCCGTATCCACTTT 785 36 100.0 30 .................................... TCAATATGAGGCATGTTAATTCCAGTAAAT 719 36 100.0 30 .................................... TATAATACCCTGACGACCAAATCTTTTACA 653 36 100.0 29 .................................... CTGTCTTACAAAGCAATCCAGTACGTGGA 588 36 100.0 29 .................................... TTGCGCAAAATCTGTGATATTGTTTTTAC 523 36 100.0 13 .................................... CACACACACACAC Deletion [475] 474 36 69.4 0 .........................AGGGACGAGCG | ========== ====== ====== ====== ==================================== ============================== ================== 15 36 98.0 29 GTTGGGAAAGCCCTTATTTTGAAGGGTATCTACAAC # Left flank : TTTACTTAAATATTATGATTATAATACTGAAGAGTTGAAGGAAAAAATAAAAAATATGGATGAGGATGAAAAAGCCAAAATAATTAATACTAAAGAGAATTATAACAAAATAACCAATGTTTTAATTAAAAAAGCACTTGTTTTAATTATCATTCGCAACAAAATGGCGCACAATCAATATCCTCCTAAATTTATTTACGATTTAGCTACTAGTTTTCAAAATGATAAAAGGAATAAAGATTGGGAAAAATTTGTACACCAAAAAGAAAGCGAATACTTTGCGACCTATTTCAACCGAGTTTTTGAAACCATAACAAAAGAATTATGGGAAAACAAAGAGAAAAAAGATAAAACACAGGTCTAAATACAATTGCTCTTTGACATTTTAAATTAGGATTAAAAAAATGACTACATTTGCAGTGATTAAAACAAAAAAAGTTCATTTTTTAGTATAAAAAATTGTAGTAATCCCTTACTATGAGAGGCTTACCAGCGTTTAG # Right flank : GTTAAAAAATAGTCCAATGGACTATTTTAGCGAAGTAGCCAGGAGGCGCGTGGGCGTTTAAAACCGAATTCAATTTTTTTGAAGGAGGGACGAGCGTTAAGGAAGCTGTCCAAAAAGTACTAATTCAACATCCAGTTTGTCACTCCTACGTAAGGAGGAGTCTCATAATCAATAGTATGTAATTTCTTCCTTTGGTCAAAATCACAAGATTGCGAACTTTTTGGACAGTCTCTAGCAAAATAGCGAGCAGGCGTTTGAAACCAAATTCAATTATTTAAAAAATAGATAAACCATAATTCTTATTCATAGAAATACCTCTTTTTTTAAAATAACAAAAACAAACCTATAACACAATCAAGTAAATATGATCTGTATACTACCTCCTAAACTTCCTTATAATTTAACCTCAACACCTAAGATATTTTTGTAAATTTGAATC # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGGAAAGCCCTTATTTTGAAGGGTATCTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 42-2116 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJXE01000027.1 Flavobacterium columnare NBRC 100251 = ATCC 23463 strain NBRC 100251 sequence027, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 42 36 97.2 30 ......A............................. CAAAGTTCGGTATTCGTAAAAAGAAGTAAC T,TATAA [43,51] 114 36 100.0 29 .................................... AAGACTTATACAGTGCAATAGGATTTAAA 179 36 100.0 30 .................................... CATATCAGTCATACTAACCGACTGCGGGGT 245 36 100.0 29 .................................... TTCAACACCTTTCTTTATTCATTTTAAAA 310 36 100.0 30 .................................... ATAGCTCCTCGCTGTTTCATTAAATACACT 376 36 100.0 30 .................................... TAAAAAAACAAAAGAAACAGTAGATGTATT 442 36 100.0 29 .................................... AAGAATTAAACAGAGATATAAAGAGACTA 507 36 100.0 29 .................................... CGAATGTTTTTTACAACTGAAGCTGAACC 572 36 100.0 30 .................................... TAATTAATGGGCAAAAACTTAAAATTCTGA 638 36 100.0 30 .................................... AAAAGAAGCTAAAGCGATGTTAAGAGCATT 704 36 100.0 30 .................................... AAAAACATTTTTATTGAAGGAGTAGCGGGA 770 36 100.0 29 .................................... GCCTGTTTTTTTAAAATAATCGTGCCAGG 835 36 100.0 30 .................................... GATATTCATAAGCATACTATCAATGAGCAT 901 36 100.0 30 .................................... CGTTTATTCCGTATTTAGCAAAAATCCTAG 967 36 100.0 30 .................................... TGTTACTAATTCTTTTAATCTACTAATAAC 1033 36 100.0 29 .................................... TAAAATAGAAAAAATGTTTAAATATGCCA 1098 36 100.0 29 .................................... AAAAATTAGTAGCAAATTCTGTCACAGTT 1163 36 100.0 30 .................................... TTCAGCGATTGAAATTACCGCTATTGATGA 1229 36 100.0 29 .................................... ATAATTTACAGATAAGTATTTATAAAGAT 1294 36 100.0 30 .................................... ACGATTAAGCCGATAGCTTTAACAAAAGAG 1360 36 100.0 30 .................................... AAATGAAAATTTATCTTTTAGATTTAACGT 1426 36 100.0 29 .................................... TTCGGAAAAAGAAAGAGGTGTTCCAGATA 1491 36 100.0 30 .................................... GAAAGAGTTATTACAATGCCTTTAAGAGTT 1557 36 100.0 30 .................................... AAGAAATGCAATTTATGTATTGATATGCTT 1623 36 100.0 29 .................................... TGCTTAACTTATTACCTGTGTATTATATA 1688 36 100.0 29 .................................... AAGAAGAAAGAGAAAAATGGGGTCTTATT 1753 36 100.0 29 .................................... GCGATAGAAAAGGCGGTAAATTAAATTGG 1818 36 100.0 30 .................................... TCCGGTTATTGGTAATATCAAAAAAACTAT 1884 36 100.0 30 .................................... CGAGCAAAATATTGATAATTACGAAACCAG 1950 36 100.0 30 .................................... TTAATTGATTACAGAAATGCTGGGCTTGAA 2016 36 100.0 29 .................................... ATAACAATATAACCTCTTGACTTTAAGTG 2081 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 32 36 99.9 30 GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Left flank : TTGTGGTTTACAAACACCAAGTCAATATTTGTTATAGGTGTG # Right flank : TAGCTAACAGCTTAGTTATTAAATATCAAAGCATTAAGCCGAAATATCGTTAAAAAAAATGCTTCTTTTTTGGCACGTTATACCAAGATTGAAGCATTTTTTTATTTCTAAAACAGTTCCAGTTGGGTGGGTTGTGGTGCTTTAGGGGTTTCTACTTTACCCCAAAAGTTTTGTATGTTCCCAAATTGCTTGTCTGTAATTCGTAACATACTTACTTTTCCTGAAGGAGGCAGGAGTTTGTGTACACGTTTTTCATGTACATCGGCACTTTCGCTACTGGCACAATGCCGTATATATACCGAGTATTGCATCATACTAAAACCATCTTTCAAAAGTTGGTTCCGAAATCCAGAAGCATTTTTTCGGTCTTTCTTAGTCTCAGTAGGCAAATCAAAAAACACAAACAACCACATAATTCGATACCCGTTTAAATCCATAATTTTGGGTATTTTATCTTTTTACGATCGCCCGAAAAACACTGTTGTAAGGAACTTGCCGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //