Array 1 79479-78716 **** Predicted by CRISPRDetect 2.4 *** >NZ_MVOX01000032.1 Escherichia coli strain Tc-RA453.16 contig_22_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 79478 29 100.0 32 ............................. CTTTCGCAGACGCGCGGCGATACGCTCACGCA 79417 29 100.0 32 ............................. CAGCCGAAGCCAAAGGTGATGCCGAACACGCT 79356 29 100.0 32 ............................. GGCTCCCTGTCGGTTGTAATTGATAATGTTGA 79295 29 100.0 33 ............................. TTTGGATCGGGTCTGGAATTTCTGAGCGGTCGC 79233 29 100.0 33 ............................. CGAATCGCGCATACCCTGCGCGTCGCCGCCTGC 79171 29 100.0 32 ............................. TCAGCTTTATAAATCCGGAGATACGGAAACTA 79110 29 100.0 32 ............................. GACTCACCCCGAAAGAGATTGCCAGCCAGCTT 79049 29 100.0 32 ............................. CTGCTGGAGCTGGCTGCAAGGCAAGCCGCCCA 78988 29 100.0 32 ............................. GGGGGCGCATGACCGTAAACATTATCCCCCGG 78927 29 100.0 32 ............................. GGAGTTCAGACATAGGTGGAATGATGGACTAC 78866 29 93.1 32 ............TT............... CCCGGTAGCCAGGTTTGCAACGCCTGAACCGA 78805 29 96.6 32 .................A........... GCAACGACGGTGAGATTTCACGCCTGACGCTG 78744 29 89.7 0 .T.........AT................ | ========== ====== ====== ====== ============================= ================================= ================== 13 29 98.4 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCCGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAAACGGGATTTGAGTTCCAGACATTTGGGTTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTGTCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCTCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGAGCCTTATCAATATGTTGGTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCCTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8406-7283 **** Predicted by CRISPRDetect 2.4 *** >NZ_MVOX01000132.1 Escherichia coli strain Tc-RA453.16 contig_112_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8405 29 100.0 32 ............................. GGAATGTCCTTGATTATATAAAGGCTGTCAGT 8344 29 100.0 32 ............................. AGCAACGTTTCCGGATTATATGGCTGGAACGT 8283 29 100.0 32 ............................. TGGTGCTCTCAACCGTTACCCGCTGGCTGGAA 8222 29 100.0 32 ............................. TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 8161 29 93.1 32 ............CA............... AGGTATTTGACCTCATCCAGAAAGGCACAGAC 8100 29 93.1 32 ............CA............... GCACCCTCACGGATACCTTTTGCACAGTGTTA 8039 29 89.7 32 ............CA..............C CTTAGAGAAGCAAAAACCCCACCGAGGCAGGG 7978 29 100.0 32 ............................. TTACTTTTTGGCAGTTGGTAAAACACTTTTGC 7917 29 93.1 32 ............CA............... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 7856 29 100.0 32 ............................. CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 7795 29 93.1 32 ............CA............... CAGCGTCTGAACGGACGAAACATCCCTGTTGA 7734 28 93.1 32 ..........-..C............... ATGGGCTGGCGCGACTCAAATGCCCGTTTGGC 7674 28 93.1 32 ..........-..A............... TGTGTGTTGGCGTTCGTTAAATATTGTTAGTA 7614 29 93.1 32 ............CA............... GCTGGATTTCCGTCAGTTGGTCAGCTGCTGCT 7553 29 96.6 32 ..............A.............. TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 7492 29 93.1 32 ............CC............... TGACTTTTAAAAAAAATCAGCTGAAACAGCCG 7431 28 96.6 32 ..........-.................. TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 7371 29 93.1 32 ............CA............... CACTACCAGATCCGAATGGACACCCGTAATGA 7310 28 82.8 0 ............CAC........-....A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 94.9 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : CATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCAGGATAACCCACATTCTGTCAAATCTTGCAGGTTGCAATCAGCAAAGGCCTTACGACGATAAATTCATGCCTTGAGCTGGTAAGGAAATATGACGTTATAACTCTGCATTTCTGGTTGATTAAGGTAGGGCGGCATTCCTGCTTTAAAAACAATCACTAATTTTGAACGGTAGTCGTCTTGATCCCAACTGCTACCTGATGGACTAGGCACCTGCAAAGATCCAATTTATACTGTTTACATATACAGTGTTTTTAGGTGGTCGGAGGTTGTGCCTATGTTCTTAATTCCAATGGAAAATCCTGAGAAAATTGCCATCCCTTTATTTCTCGAGCGGTGTGCAGCTGGCTTCCCCAGCCCTGCCCAGGATTATACTTCCAGTGAGCTAGACCTGAACGATTATTGCATCAGGCATCC # Questionable array : NO Score: 5.47 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.46, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 500-105 **** Predicted by CRISPRDetect 2.4 *** >NZ_MVOX01000154.1 Escherichia coli strain Tc-RA453.16 contig_133_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 499 29 100.0 32 ............................. GCAAAAACCGGGCAATCGCAAAAAGGCGTAAT 438 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 377 29 100.0 32 ............................. ACGTGGTCATGGGTGCTGCTGTTGCAGAGCCA 316 29 100.0 32 ............................. AGCAGATACACGGCTTTGTATTCCGTGCGCCC 255 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 194 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 133 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 7 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //