Array 1 266391-266625 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZAZ01000003.1 Hungatella hathewayi strain 2789STDY5834916, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ================================= ================== 266391 34 100.0 33 .................................. CATTATGATAATATCCTTTAACGCTGGCGCGAA 266458 34 100.0 33 .................................. TGCAAACTCATAAGAAGTTCAGGAGGCGGATGA 266525 34 100.0 33 .................................. TTAGGTATCTGCATTGAATGTCGTACCTGGAAG 266592 34 88.2 0 C.................T.....T........C | ========== ====== ====== ====== ================================== ================================= ================== 4 34 97.0 33 TGAGTCATCTCCTGCGGGAGATGTGGATTGAAAT # Left flank : AGTATTTTACAGTGTCTTTTTATGACAAGGAGTACAAAAAAGCACTGAACATCTGCGGAACACGGTCCGGGCGTGACTGCGATAAGGCGGCGGAAGCTGGGCTGACCCCTTATTTTATTGATGGTACTACGGCCTTTGAAGAAGCAAATATGATTTTTGTCTGCCGGAAGCTATACTGTGATCCAATGCCCGGTGATAATTTCCTGGATAAGGAAAATGATGGGAAATGGTATCCGGATAAAGATTATCATACAATGTACATTTCGGAGATTGTGAAAGTGCTTGTGAAAGACTGAGAAGAAAATTAGCTGTGAGGAGTGGCTGCACGGGGCGGTAGCTGGTGCGAACCTTAAGTGAACATAGAATTACTGGGAGGTTCGCACTGGAAATTGGGGGGGAATTGGGGGAATATGGAGTTGATGATTGATTTTTAAAGGGATTGTTGTACAATATAGTTAAGGCTGTGAGGGGAGTTGGGGAGGGAGATTGGGAAAAATTGC # Right flank : CCATATGGAAAATCATACTAATGTCAACCAATCTGTAAAAAAATGTCCCACAAACACTGTGATTTCCACAAAAAAGAACCTTCAGATCACCATATCCGAAGGTCCTTTTTTTATCCAATTTCCTTTTTCTACCTAATCACCAAGATAATAAAATGCTGTAAAATACCCTTTCTCATTATAGTAAAGATCATTACCGTATACGGTATATTCAGCCGAAGCCTCCTCTTTGCCTTCTTCAACCGGTTCTCCGGCATATAGTTCCTTTTGAGTTTTTGATGCTTCCGCAAGGTTGGTATAGGTGCCTGTGACGGCGCCTTTGAGGATATAAATATTGCCCTCATAGACCGTTTTCATAATCGTATCGTCACTGTCCTCCCACAGGGTATACGTTCCGTTCTCTAAATCCGCGGTGATCGCCGCCTCATTGCCGTAAGTGGAGGGATCCATACCTTTGTCATACGTCAAATAGCCGTTTGAACCGCTGGGCCCGGCGTTGGGAT # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:0, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGAGTCATCTCCTGCGGGAGATGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.94%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.30,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 1 57520-58631 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZAZ01000032.1 Hungatella hathewayi strain 2789STDY5834916, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 57520 33 100.0 35 ................................. AATGCGTCAAAAATAAAGACAATGAGCGCTTGGGG 57588 33 100.0 34 ................................. CTTAAGTCAATAGGTTTCTGGTAATTCTGTGGTT 57655 33 100.0 34 ................................. AGATGCTTATATTAAAAACAAGCCGACTTCCATG 57722 33 100.0 34 ................................. AAAATCTATTAATGATCTGCCATCTAAATACACT 57789 33 100.0 35 ................................. ACCATCACCCACACGACCGCCACTCCAATCAGCAC 57857 33 100.0 33 ................................. CCACTTGTTGGAGGAAAAGATCACAAGCGGCAC 57923 33 100.0 35 ................................. AGTTGCATAGTACTTCTTTCCAATTAAGCTGTTCA 57991 33 100.0 34 ................................. AACATCATAAAGTATGGAACTGTAGATTATCTTC 58058 33 100.0 34 ................................. GTTGAGTTGGAATTCCGCAGCGGCGTATTCCGCT 58125 33 100.0 34 ................................. AACATAACGCTCTCTCCTAAATTAACTGCAAGTT 58192 33 100.0 35 ................................. TAAAGTCAAGTCGCAACGGCCACATCAATGAGAAT 58260 33 100.0 35 ................................. TCCTATGAACGCTTGTAAATATAATATGACTTATT 58328 33 100.0 35 ................................. TATAGCTGAGTTGGATCACACGTTGCAGAAAATAA 58396 33 100.0 35 ................................. TCTTTCTCTGGCGCACGGATCGAAACAGCAATTAT 58464 33 100.0 35 ................................. GACAGAGCATTATAAGTGGGTGCTGAATATTGAGA 58532 33 100.0 34 ................................. ACCGACAAAAGCGTGACAGCCTATAACGCCTATC 58599 33 97.0 0 ..............................T.. | ========== ====== ====== ====== ================================= =================================== ================== 17 33 99.8 34 GTCGCCTTCCGCTAGGAAGGTGGGGATTGAAAT # Left flank : TTGAAGTGATACCCGAGGATGGGAAAATAGATGTTGTGGTGGAATATTACGAGGAGGCCAGACGGATTATAGACAGCCTGAATAATCCGTATTTGACTGTTACAGAGCAAAAAATATTATTTAGAAAGTTACAGCGTTTTACTGTGGGGATTTCTGAAACGATGAGAAGAAAAATAGGAAATGCCATTTATCCGGCCTGCAATGGAAAAATATTTGTACTGAACCGGGATTATTACAGTAAAGAAACCGGCGTATCGGACACACCTTGCAGTATGATAGATATGATATTTTAGGTGATATTAGAAAATATTTTGGGTAGAGTACATTGGTGCGAATGCCAAGTGAACATGAAATACTGGGGGGGATTCGCACCGGATTTTTAAGCTGATTATAAGAAAAAAAGGAAGAAATAGAACTACAGATTGTTTAATATATGAAAAAGTTGTATAATATGTCTAGAATATATCTGATTATTAATGAGAAAAATGGATATATTTGCG # Right flank : TATTGTATATTCGATAAGGATAGTATCAGCTGTGGCATTACATTTAGTAATGTGCATGCGATGTCTTGTTTTGCGTTGCAATGCAGGAGATTAAGAACCACGTCAGGTTTTTATAGTGATATGCCAAACACAGGAAAATCAGCGTTTATAAAGGAAACTATGCCATCATTCTTACTAATACCGTTAAAGGCTTTTTATGAATACGGGATGCAGTATTAATTCCAACAACGTCGAGAGGTAATTAATATGTTCTTTTATGGATTATCGCCACCTATGTATAAAAATGAAGAAGGGTAAGCAAGGCTTATCCTGATCAATACGCCACCTGAAAACTTCCATTATTAGTATTACATAACAGAAATATCCTGCTGTTGGCGTATACCTGGAAACCGTATTTGCATAATAAGTTGCGGTACTATAGCTGCAGTTTTTATGAACAACATTATAACACCTGGAACCATGATTACAAAGTAACTAATTGATTAACAGGCTGAGAATGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCTTCCGCTAGGAAGGTGGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA // Array 2 65009-68474 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZAZ01000032.1 Hungatella hathewayi strain 2789STDY5834916, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 65009 33 100.0 33 ................................. GCTTCTGCCTCTGTCAGATAAAATTCGTCGTCC 65075 33 100.0 35 ................................. GTCCCAGATTCCGGCCCAACTCATGGGCCTAACAT 65143 33 100.0 34 ................................. GCCACTTTTTCCTTACCAAGATAACCGACGGCCT 65210 33 100.0 35 ................................. GTTCTGCCTGCGGTATTTCCGACTCTGCTGAAGCT 65278 33 100.0 34 ................................. ATTCCATCTGCCGTCGAATTTCTTCCCAGCCTAA 65345 33 100.0 35 ................................. AAGTGAGTGCAAAGAAATAAATCAGGAAATACATA 65413 33 100.0 35 ................................. AAATTTCCTGTTATGCCACGCGGTTATTTCGTCAA 65481 33 100.0 35 ................................. GTTTCAAAAACTGGAGCAGAAGGAACGGTGACACC 65549 33 100.0 32 ................................. TTAAAAGAATAATTAAGGCGGCCCACTACGGA 65614 33 100.0 34 ................................. AACGATTACTGCAGGCGGCACACCCCCCACGGTT 65681 33 100.0 34 ................................. GTGCTTATGTTTCCATTGCTATCCAGGTATTCTT 65748 33 100.0 34 ................................. ATTTTCTGGAATAGGAAGTCTACTAGCAAAAGCA 65815 33 100.0 35 ................................. GAAACTTATTCGTATGATTTAGTTAGATGTTTTTC 65883 33 100.0 34 ................................. AATTCGGGGATTGTTGCAAAGAACATCGGCGATG 65950 33 100.0 35 ................................. ATCTGTCCTTGAGAAAGTTCTCTCATGTGGCTCTT 66018 33 100.0 34 ................................. AAGTCGATCACAGAGCCCGGGGCCAGTTCGATTG 66085 33 100.0 36 ................................. GCCATCACCTCACCTTCCTATCTGGCTGGTATTATC 66154 33 100.0 34 ................................. AACCAAAGTACTTTGCGGCATTAAGCATTAATTC 66221 33 100.0 36 ................................. ATCCTTTCCTCTTCGCTTTTTCTCGTGGTTGCACCA 66290 33 100.0 35 ................................. AAATCATCATTCATCTGGAAATTAGCCTGCAGAGC 66358 33 100.0 34 ................................. CGCTGAAAAACCAGCAGGCCACAGGTGCAACGGT 66425 33 100.0 35 ................................. GACCGAGAGTCCTGCTGCCGGCACATCCCCATCAG 66493 33 100.0 33 ................................. GCACCTGCTGCCATGAACATCTCAGTTTTGTAG 66559 33 100.0 35 ................................. GCTATTGCCATACTCCAATATCTCGGCCATTTCAT 66627 33 100.0 36 ................................. GTCTGTAATATCAGCTCCTGCACCTGCCCCCTGTAA 66696 33 100.0 36 ................................. ACAAAAAAGCAGAACCAGTGATCCCAATCGACATTG 66765 33 100.0 35 ................................. TCTTCTGCCCGAAAGAGAGGTGATACAGTTGTTAA 66833 33 100.0 33 ................................. TGTATATTCACCGGCTGACTCAAAATTGTTATA 66899 33 100.0 35 ................................. TGATCTATAGAAATCACTTAATGTCCGATACACAT 66967 33 100.0 34 ................................. GCATAATGTCGAGAAGGCAGTGGCATAGATGATT 67034 33 100.0 33 ................................. TTCTGTATCTCTTTCAGCTTTTCAATCAACGAT 67100 33 100.0 34 ................................. ATACCCAAAAAGTTGTGATATCACAACTACAACA 67167 33 100.0 33 ................................. GTGTCATCGTCAAAGTACCGTTTCATGCCGAAT 67233 33 100.0 33 ................................. GTGTGATATACCAACCCATGATAAAACTGTTCC 67299 33 100.0 34 ................................. TCAATCATCATAGTGAGGACATGATTCATATGAT 67366 33 100.0 36 ................................. TGACTCTTTCTTTTCTGGCTCTTCTATACCTGTCAT 67435 33 100.0 33 ................................. TAACCTCCGGAAAGCTTAATTCTCATGAGTATA 67501 33 100.0 33 ................................. GCCCTTTTCGGTGTCGAGGCCACCAGACAGGTT 67567 33 100.0 34 ................................. AACAGGTATATTGCCTTCCCGCTTAAACTCTACA 67634 33 100.0 34 ................................. ATCTTCACAGTCTCATTGCAGGCCGGACACTCAA 67701 33 100.0 33 ................................. CCAGCATCTACTGGATTAGGTGTAAGCGTTACG 67767 33 100.0 34 ................................. GTACTGGTCTGCAGACATGTCAGCTATGGCCTTA 67834 33 100.0 35 ................................. GCAGTATTTTTCTTGCCTGCTGGCGCTACGTTATA 67902 33 100.0 35 ................................. CGTAATATAATCCCAGGCTAATCATTGCCATCTCC 67970 33 100.0 36 ................................. ATTAATGTTCTGGGTGAGGCAGTGGCCGGAGCTCTG 68039 33 100.0 34 ................................. AGTTATAAATATTTCCCATTAGAAAGATTCAAGC 68106 33 100.0 36 ................................. AGGACAAAGTCACAGGCACGCGAGGGTGGCGGAAAG 68175 33 100.0 33 ................................. CCAAATTCCGAGATGAATGCCTCCCGGCTTCCA 68241 33 100.0 35 ................................. GGATCCTTAACGAACGTCTTAGCCTGCTCCCTGGT 68309 33 100.0 34 ................................. GCATTAGGATGTATCACAGAATGTCCGAGTTCAT 68376 33 100.0 33 ................................. CCGTTCTATATCAGCTTCGGTATTACTACAGCC 68442 33 93.9 0 ......................A.....A.... | ========== ====== ====== ====== ================================= ==================================== ================== 52 33 99.9 34 GTCGCCTTCCGCAAGGAAGGTGTGGATTGAAAT # Left flank : TGCTGATTACATATGATGTAAATACAGAGACTGCCGCAGGCAGAAGCCGCTTACGCCGAGTCGCAAAGCAATGTGTTAATTATGGCCAGCGTGTTCAGAACTCGGTGTTTGAATGCAATATGGATGCGGCAAAATGCAGAGCTGTAAAGGGAATTTTAGAAGGAATTATTGATAAGAATGTGGATAGCCTCAGATTTTACTACCTTGGTGATAATTATAAGCACAAGGTGGAACATATTGGTGCCAAACCAGGATTTGATGTGACAGAACCATTAATTTTTTAGGGCAGTTGTTCTTTAAAAAAATAGTCAGACAATTCTTTTATGTAAAAGTGCGAATGTCAAGTGAACATTAAAATACCGGGAGATTCGCACCTGTATTTTAGATGTAGATAAACCGAAATATGTAATATAGTTTGACAAAATGATTGAATAAGTCAAAATAATAGAGTTTTGTTGCTGGCGAGGAGAAATTCACTTGTAATTTGACTTATATTTGCT # Right flank : TATTAACGTATTTCTCGAGGCATTTTACATCTCCTTCACTCAATATTCCCTGTTGACAACGAACCTCCTTGTCTCAGGGAATCTAATAGGTGCCTAAATGTTGAGAAAGGCGTTTAAAACAGCTGTCTGGAGCAATCGTTTACATGATACCCCACTCATTCTCAACAAGTTTTCCCTGTATAAACGGAGAGTTTCCCTGTATAGCCTGTTAAAAATCTTTCAAAAATCTATTACTCATCGGTATGCATTATTGTATTTATAATTGGCGTTATATCATTTCCTTTCTTTAAACAGCTGCAATAATACCATCTTACCATACACAGCCTGTGCCTGCTTCTGCACTGCTGCCTATCCCCTCATCAGAAAAAAACAATTATTTAACACAGAACGGCAAAGGTTCCCGAATTACTGAACCTTTGCCGTTTTAATGTCAGAAATAAACCTCATATCCTTTCAAAAAGCACCATAATATGGTAAAATATTCCGATAATCACGCCCGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCTTCCGCAAGGAAGGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 55568-55933 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZAZ01000008.1 Hungatella hathewayi strain 2789STDY5834916, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 55568 33 100.0 35 ................................. GTTCCAACGAACGATATTTAGAAGCGGTTCCAATG 55636 33 100.0 33 ................................. AAAATAGAGGTTGAGATATATGCCTTATTCCCG 55702 33 100.0 34 ................................. ATGAATCCTTCCGGACAAATTCTGTCGCCATTGT 55769 33 97.0 34 .................C............... ATGAAACTCCTTTTTCCAGTCAGCGCCGCAAGGA 55836 33 81.8 26 .................C...T..A....GG.A AAGATACTTTCCTTTGCACCCCCTCT ATAG [55862] Deletion [55895] 55899 33 81.8 0 .....C...........CA.....A..C..T.. | T,T [55923,55930] ========== ====== ====== ====== ================================= =================================== ================== 6 33 93.4 33 GTCTCTGCTAGCGATAGTGGAGTGGATTGAAAT # Left flank : GTCTTTATTGATTGAAGAAATAAACAAAAAGATTTCAACAAAAGAAAAATTTATTACGTAAGCAGATCCCGAAGATTTGGGAAAACTATGGCGTTGGAAATGCTGGCTTCTTATTATATAAAAGAGGGGGACTGCGGACTCTTTATTCAATAATCTTAATTAAAGAATTTCACACAAATATAGAACATTTAAATTGCCATAATGTAATCTATATTAATTTTACTGATTAGTTTGAGGTTATATTATCTGGTCAACAAACATGATACGAAGGTGGAACATTTTGGTGCCTATGAAGGGTAAATGTAGAAAAACCTCTCATTTTCTAGCCTGTGAATTATGGTGCGAACCAGAAGTGATCATAAAACCCCTGGGAGGTTCGCACCGAGAATTTCGCGGTTATGGAGGGAAGATAGGAGAATTGGATGAATTGAGTTAATGAAATATATGCAAAATACCCATGATTATTACTGGTTATATGGTATAATATGTGTGAATTTGCA # Right flank : TTACAAAAATAAACCGTTGAGGGAGTCTCTGCCAGCATTAGAAGCTTATATTAAATTTATGAAAAAATAATTCACAGACGTTAAAAATAAAAAGACAGAGGAGACAAGGATTGAAATACATTTTTATACATGGACTTGGACAGGGGCCGGATAGTTGGAATAAAACGGTTTCCTGCATGAGAGAACAGGAAGAGATTCAATGCCTGAACGTATTTGCTTTAAACGATGGGGAAGAGATTTCGTATAGCAGAGTATATGAGGATTTTTCGGCGTACTGTGAGTCTGTAAAAACGGAGTTTGGGCTTTGTGGTCTTTCTTTGGGCGCTGTGATTGCATTAAATTATGTGGTGGAGCATCCGGGAAAGGTAACGTCGCTGGTTTTGATTGGGGGACAGTACGTGATGCCGAAGGGGCTTTTAAGACTGCAGAATATGATATTTCGGGTGATGCCGAATGGGATTTTTAAGAAAATGGGGTTAGGTAAGAGAGAACTGATTCAG # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:0, 3:3, 4:0.67, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCTGCTAGCGATAGTGGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.80,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //