Array 1 246-65 **** Predicted by CRISPRDetect 2.4 *** >NZ_MANJ01000012.1 Helicobacter pullorum strain NAP13B35 contig012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 245 36 100.0 37 .................................... CCTTTTATGTCTCTTATTGAATCTCAACTCCACATCC 172 36 100.0 36 .................................... TTTGCATATGTCTTATGTAGATAGTGTTAAAAGAGA 100 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 3 36 100.0 37 ATTTAACAACACGACCCGATTCAAGGGGATTAAGAC # Left flank : AGTCTATGAATGCCAACTGACCAAAAAAGCACTCAAAGAAATAAAAACCAATCTCAAAAAAATACTCAATCGCAAAACCGATTCAATCCGCCTTTATCGAATCTGCAAAAACTGCAACAACAAAAGCAAGAGCATAGGCAAAGGAAAAGAACCATTTGCTCCCATAGATTTGAACTTCTAGCGCTCAAAAGAGATTTGCGAAGTTTTCATTTTTTTAAGCCCTACAACACCGATAAATACGCACCCCAAATAACTTAAAATTAGCTAAAATTTAGCAAATCATACTTTTTTTGCATTTTTAGCAAACCAATTTTTTATCCAAACCGCATAATTATCGAGATTAGCAAGCATCCAGCTTCCACAATTTTTGCCCAAAATTTGACATTTGCGAAGTTTTTACAAAAAATCTCCCACAAAGCCAAAAAATATGGGATTAAATAAAGATTTAAGTTTGCTTAATATAAAATCTCAAAATCAAACGAGCCTCGTTGTCTCCAGCT # Right flank : CAGTATTAGTATGCACTTTATATCTAGGGATATTTGTATTTAACAACACGACCCGATTCAAGGGG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAACAACACGACCCGATTCAAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.00,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 28-433 **** Predicted by CRISPRDetect 2.4 *** >NZ_MANJ01000015.1 Helicobacter pullorum strain NAP13B35 contig015, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 28 36 100.0 36 .................................... CTGTGTAGCTTAACGGTCTCATATCTTACGCAATAG 100 36 97.2 39 ......................G............. TTTGCATTTGAATTCGTATTCTTTAAAATATTTGTTAGG 175 36 100.0 41 .................................... TTTATCAACACCACATTTTTAATTTCTGAATTATGTTTTTC 252 36 100.0 39 .................................... AATCGATAAACTTCTCCTAAAGAATAGAACTCAGAATCT 327 36 100.0 34 .................................... AAATTTGCTTCTCCAAAAGGAGGAACATACTATG 397 36 72.2 0 ............A...TAT.....AA..T....TTT | C [427] ========== ====== ====== ====== ==================================== ========================================= ================== 6 36 94.9 38 ATTTAACAACACGACCCGATTCAAGGGGATTAAGAC # Left flank : CCCTCACACTCAAACAATCCGCAAATAA # Right flank : TTCCAAAGATATTAGTATCCATCATTTAAAATTTATGATAATATAGCGTTATATTTAAGCTATACTTTTAAGGAATTCATTTGATAAAAGAACGCACTTTTGCCCCTTTATTGCCAGATTCATTTCAAATTCTAAGCCACAAAGAAAAAAAGGCTTTTTTAAAAAAAGAAACCATACTCAAGAAAAAAATCCACTATTTTGACTGGACAGCAAGCGGATTAGCCGCAAAATGTATTGAAAAACGAATAAGAAAAATACTACCATTCTACGCAAATCCACACTCAGAAAGCTCCTCACATTCCAAAATCATAGGGGAAATTTACGAAAATGCACGCAAGAATCTCAAAACATTTTTTGGGCTTGATTCTAGTTTTGCCCTCATTTCTTGCGGTTTTGGCTCAAGTGCAGCAATCAAAAAATTCCAAGAAATTATGGGAATCTACCTTCCACCCCAAACCAAAAGCAATCTCAAACTAGAAAATCTCGATAAATCTCTTTTG # Questionable array : NO Score: 3.01 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAACAACACGACCCGATTCAAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //