Array 1 24171-23410 **** Predicted by CRISPRDetect 2.4 ***
>NZ_FZYD01000025.1 Neisseria meningitidis strain Neisseria meningitidis isolate R006, whole genome shotgun sequence Array_Orientation: Reverse
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
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24170 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA
24104 36 100.0 30 .................................... GGTCAGATTATAATAACGTTGAGCGCGTGT
24038 36 100.0 30 .................................... CTCAACATTGTTGTAATCTGACCGCAACGC
23972 36 100.0 30 .................................... ACTCCCTGTTTATCGGTTTTTCAGCTTAAA
23906 36 100.0 30 .................................... GTCAAGCATACTAAACGATTAATAGCTTAG
23840 36 100.0 30 .................................... ACAAAGCCGCAAATCGTCCGCCGCGTATCA
23774 36 100.0 30 .................................... CGACAACAAAGCCGTCTATGACCTGACCGA
23708 36 97.2 30 ............T....................... CACCCTGATATTCCGCAACTCGATATACTG
23642 36 97.2 30 ............T....................... GTAAAGTCGGCACAAAGTCTTCAGGTTTCA
23576 36 97.2 30 ............T....................... CATCGCGCTGAACATACCGGCGCAGCCGCA
23510 36 97.2 29 ............T....................... CTTCCGGTATGACATCACGAAGCGGGGCG
23445 36 97.2 0 ............T....................... |
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12 36 98.6 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT
# Left flank : GGAAGCGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGCTGAAAGAAGATGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG
# Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG
# Questionable array : NO Score: 6.07
# Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT
# Alternate repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT]
# Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37
# Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41
# AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: R [0.68,4.5 Confidence: HIGH]
# Array family : II-C [Matched known repeat from this family],
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