Array 1 24171-23410 **** Predicted by CRISPRDetect 2.4 *** >NZ_FZYD01000025.1 Neisseria meningitidis strain Neisseria meningitidis isolate R006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 24170 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 24104 36 100.0 30 .................................... GGTCAGATTATAATAACGTTGAGCGCGTGT 24038 36 100.0 30 .................................... CTCAACATTGTTGTAATCTGACCGCAACGC 23972 36 100.0 30 .................................... ACTCCCTGTTTATCGGTTTTTCAGCTTAAA 23906 36 100.0 30 .................................... GTCAAGCATACTAAACGATTAATAGCTTAG 23840 36 100.0 30 .................................... ACAAAGCCGCAAATCGTCCGCCGCGTATCA 23774 36 100.0 30 .................................... CGACAACAAAGCCGTCTATGACCTGACCGA 23708 36 97.2 30 ............T....................... CACCCTGATATTCCGCAACTCGATATACTG 23642 36 97.2 30 ............T....................... GTAAAGTCGGCACAAAGTCTTCAGGTTTCA 23576 36 97.2 30 ............T....................... CATCGCGCTGAACATACCGGCGCAGCCGCA 23510 36 97.2 29 ............T....................... CTTCCGGTATGACATCACGAAGCGGGGCG 23445 36 97.2 0 ............T....................... | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 98.6 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAGCGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGCTGAAAGAAGATGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //