Array 1 440-1156 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZRJ01000036.1 Petrotoga sp. HWHPT.55.6.3 HWH.6.3_contig_41, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================================== ================== 440 30 100.0 36 .............................. CATCAAACTCTTCATGCTCTTTCTGATATTTCTCAA 506 30 100.0 38 .............................. ACTCATCAATGAGTTGGTAAAAAGCTTCATCAAATTTG 574 30 100.0 36 .............................. ATTTTGTTCAAATCAATATTATCATCACCTTTGCCA 640 30 100.0 38 .............................. AGGTTATTGATACTCTGTTATATTCGACACCTAAGACA 708 30 100.0 36 .............................. CTTCCTCCTACTAGTTGGGCGACATATAGTACGTCG 774 30 100.0 39 .............................. ATGGCAGATACACAATTTTCAGAGAACACTTCTTCCCGA 843 30 96.7 53 .............................T AAGGAATAAAAACAAAAAAAGAGGAAGCGTGTTCATTCCTCTTCAAGACTGAA 926 30 100.0 36 .............................. ACTCCAAACCACGCTCCAAGATAGTTAGTAAAATCA 992 30 100.0 37 .............................. GCAGGTTTGGTATAGACGTCAATTTCACAGAAGCAGA 1059 30 96.7 38 .................G............ TGATACTCCCGTTCCAAAATGTACCTACTATAAACGGG 1127 30 76.7 0 A...A..........C..........GTTT | ========== ====== ====== ====== ============================== ===================================================== ================== 11 30 97.3 39 GTGTCTATCCTACCTTTAAGGAATAAAAAC # Left flank : ATTCATAATGTTCTAAAAACTCTTTCCTTATTCTCATTTGCGAAGCAAATGACGTTGTGTATTATCCTACCTTTAAGGAATACTTTTGCTGCATCGTGCAAAGCGTTTTATTTGTAATGATCTAAAAATTCTTTCCTTATTCTCGTTTGCCCCGCAAACGACGTCCTACGCAAATGACGATCAACCTCAAGATAAACAAAAAACCGCCTAGATTAACTTCCAATAAACTAATATTTATCTATTTAACCTATAACAGAAAATGATATAAAAAAACGTCTGTCGACCTCCAATAAGGTAAAAAACCCAGGGGATCGACAGACAAGTGTTAAAAGTCACAAGGCTTGTTCCATAAGCCTTTGAATTGATTTTTAACATTTCCTCAAAGTTTTGCTTGACAAATGTAATTTTTTATGATACACTTTTTATCGTGAACCTATGGG # Right flank : TGCTGCTTTATGCAAAACGCTCTTTCATAATGTTTTAAAAATAATTTCCAAATCCTCAT # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTCTATCCTACCTTTAAGGAATAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 1550-1851 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZRJ01000037.1 Petrotoga sp. HWHPT.55.6.3 HWH.6.3_contig_42, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1550 30 96.7 36 ...............T.............. CTCAAATACTGCATATCATAACCTCCTTTTATCTTA 1616 30 90.0 39 ..GC...........T.............. TAGGCTACCCCTAACACCTGAGCGGTGTCCGGGTGACTT 1685 30 100.0 38 .............................. AAGATATATGTGCATTCCTCTTTGGGGTCGAACTGAAA 1753 30 100.0 39 .............................. AAATTTTTAAAATCAGTGCTTTGATGTTCTAATTTGTAT 1822 30 83.3 0 ...............T..........GTTT | ========== ====== ====== ====== ============================== ======================================= ================== 5 30 94.0 38 GTATCTATCCTACCTCTAAGGAATAAAAAC # Left flank : CATAATGTTTTAGAAACTTTTTCCTATCCTCGTTTGCCACGCAAACGACGCGTGTGTCTAGCCTACCTTTAAGGAATAAAAACCTCCAAATCCATCAGAGTTTTGATAAAATGGAATTCCATGTATCTATCCTACCTTTAAGGAATAATTTTGCCGCCTTTTGCAAAACGCTTTTCATAATGCTTTATAAACAATTTCCTATTCTCATTTACGAAGCAAATAAACAATTCTTCGGCCCCTATAACTTCACTTTAAACAAATAAGCAGATCGGTTTAACTTCCAACTAACTAATATTTACTTATTTAACCTAAACCAGAAAAAGATATAAAAAAATGTCTGTCGACCTCCAATAAGGTAAAAAACCCAGGGGATCGACAGACAAGTGCTAAAACTCACAAGGTTCGTTCCATAAGCCCTTGAATCGATTTTTAACAATTTCTCAAAGTTTTGCTTGACAAATGTAATTTTTTATGATACACTTTTTATCGTGAACCTATGG # Right flank : TGCTGCTTTATGCAAAACGCTCTTTCATAATGTTTTAGAAATAATTTCCAAATCCTCAT # Questionable array : NO Score: 2.68 # Score Detail : 1:0, 2:0, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATCTATCCTACCTCTAAGGAATAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 19467-24211 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZRJ01000005.1 Petrotoga sp. HWHPT.55.6.3 HWH.6.3_contig_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================================================================================================================================================================================================================== ================== 19467 30 100.0 35 .............................. TGTTGACGCTACCTACTTTGTTTATAGTGGTCAAA 19532 30 100.0 38 .............................. CCTTCATTTTTCTAATAACATTTGGATCTTCATTTAAA 19600 30 100.0 37 .............................. TCAGTTTTTTCTATATAGCCATTTGCAATTAAATTAT 19667 30 100.0 37 .............................. ACCAATACTTTGTTTAGTTCTATATTTCCTCCTGCCC 19734 30 100.0 36 .............................. CATTCGAAAGGGGAGACAGAACATAGATGATAATAC 19800 30 100.0 35 .............................. AAGGAAAGGGGAGACAGTCAAATGATAGTGAGGAA 19865 30 100.0 39 .............................. TGCACATTTAAAACCAAATCATTACTTTTATCTTCATTC 19934 30 100.0 36 .............................. GATATGTTTGAAAATGAGAAATATGATGAAAATTTC 20000 30 100.0 37 .............................. TTTTTTAAAAAAAGAGGTGGTAAATGATGGAAATGGA 20067 30 100.0 37 .............................. TCTGAATTAATGTATAGATTTGGAATAAAAAGTTATA 20134 30 100.0 37 .............................. ACCTTTGTATTTTCTTCTGCCATCTTTTCATTTATTG 20201 30 100.0 35 .............................. TACTTTTGTTTAGAAAATTTGTGTTCCATATATGC 20266 30 100.0 36 .............................. ACCTATTTCCAAAAATATTCCATAAGAAATTTTCTC 20332 30 100.0 37 .............................. CTTGCATATCTTCATAATATGATATATGTACTTTCTT 20399 30 100.0 35 .............................. GATATGTTTGAGAATGAAAAGCATGATTGATGGAA 20464 30 100.0 36 .............................. TCATATTTTCTAAAATCAACAAGTGTTAAAATTAAC 20530 30 100.0 38 .............................. TTTTAAAGCTTTTAAAAATCGATAAAGAAATGGATAAA 20598 30 100.0 38 .............................. CCTGCCGCAACTGCCAAAACATAGCGAGCAAGTTTATG 20666 30 100.0 38 .............................. CGATTTGTGCCTCAAGTTTCTTGATTTCCTCTTCTTTT 20734 30 100.0 36 .............................. CTAATCAGAATATGAATGATGGGCATGCAGTGCCTT 20800 30 100.0 36 .............................. ACAGGATAATCTTTCATGTATGTAGCAATAGCACCT 20866 30 100.0 35 .............................. TCTCTATCTTTTGTTTCCGTGGTAATGGTAAACTC 20931 30 100.0 40 .............................. AAATCTACCAATTGAGCATTTGAAAGTTTTGGCTTCCTCA 21001 30 100.0 37 .............................. TAAAAAACGGCGAAATAAGCTATTGGTTCGACTATAA 21068 30 100.0 35 .............................. AACACAACTCAATCAGATCTTGCTTCACAAGTTTC 21133 30 100.0 38 .............................. GACAGAAACTCAGGAAATGTTATATCGATTATTCTAAA 21201 30 100.0 36 .............................. GCTTTAATAACCCATCTGTCATTTTGGAAATTGGAA 21267 30 100.0 36 .............................. TTTAAAAAAGCAAGTATTTCACCCCCCTTTTTTTAT 21333 30 100.0 37 .............................. GCACTAAATTTGAAAGTTATTTAAACGAAGACTCAGA 21400 30 100.0 38 .............................. ATAAAACAAATTATATTTATGACAATGAGACAAAAAAG 21468 30 100.0 38 .............................. TTATGCTTGACTTATCTATTATAAAAAGCTTATCACGT 21536 30 100.0 35 .............................. ATAATATATTTTCATTTAATTTTTCCAAATTTTCT 21601 30 100.0 40 .............................. CCAGTTTCTAGCATACCCTTTTGAAGCTTTTGTATAGCCC 21671 30 100.0 36 .............................. TTTCAAGAAATTCATAAATTCTATCTTGGCGTGGGT 21737 30 100.0 39 .............................. CTGTTTTCTTGTACATCCATCCCTTTGCTTTCTTCTTCT 21806 30 100.0 36 .............................. TTTCTAAAACCGTCAATAGTGGAAATAATGAAAGCA 21872 30 100.0 37 .............................. GACGAAAAATTGAAGAAAGCAGATAAATGGAAAGATA 21939 30 100.0 37 .............................. ATAAAAAATAAATTGAAATGCAATATAAAACAAAATA 22006 30 100.0 38 .............................. TTGAAGAGGTGCACGGTATACTTTTTGATAAAAGTAAA 22074 30 100.0 37 .............................. AGTTAATTGAAATAGAAGAAATTGATGGCAAGGGTAA 22141 30 100.0 37 .............................. TTTGAAAAAAGAGGTGATCATATGAAATATAGCAAGC 22208 30 100.0 37 .............................. TTTGAAAAAAGAGGTGATCATATGAAATATAGCAAGC 22275 30 100.0 38 .............................. GATGGTTTTTAAGCCATTCTTCAACGGCTTGCCTAATA 22343 30 100.0 38 .............................. CCGGAAACGAATACAATGCTAAACGGCGTTTCAATGAA 22411 30 100.0 35 .............................. AAACCAAAGTCAACGCCGTAAATAATTTCATCATA 22476 30 100.0 37 .............................. TAAGGAACTTCATCCTAACATTATGTAAAAATTTCTG 22543 30 100.0 39 .............................. GAAGTTCTTTTTTTTCAGGCTGTTTCTGCTTTACAGGTT 22612 30 96.7 37 T............................. TGATGTACAGACATTGAACAACTATGTAACCTTGACA 22679 30 100.0 39 .............................. CCTGTTGCCACTGGGTATTTTCTATAATGTACTACCCAG 22748 30 100.0 35 .............................. AACCATTAATTTCATGATTTAATGCATGTATACCA 22813 30 100.0 36 .............................. CCCGATGGGAGCGGCACAAGTTCACTTCCCCGCTAT 22879 30 100.0 35 .............................. CAATCTAAGGTTGCAATATAAAAAAGAAGAGAATA 22944 30 100.0 36 .............................. AAGTTTTGAAATTTCCGATTTCTTTGGTTTAAAACT 23010 30 100.0 36 .............................. AAAATTTTGATATTGACGAGTTTTTAGAAATGAAGA 23076 30 100.0 37 .............................. TTTTCATGTTTTATAACAACTTCATGATGCCAATTTC 23143 30 100.0 37 .............................. TATAAAATCTCCTTCAAAAGAAGGTAAAACACTCACA 23210 30 100.0 38 .............................. ACTGTAGTTACTTGTACCACCTTGTAAATTAGTTATAC 23278 30 100.0 36 .............................. CTATCGTTTTTATCCTCCTCCCCTTTTTGTTCTAAG 23344 30 100.0 37 .............................. AAGGTATTGAAAAAGATAATGAAGTAACAGAGGACTT 23411 30 100.0 37 .............................. AAAGTTGCCCACAATTCATTGCTAGCAGTTACAGTGT 23478 30 100.0 35 .............................. ATGTATTCTTCATATTCGTAGCCATCTACCGTCTG 23543 30 100.0 36 .............................. TGGTGTTTTTAGCTCCTTTTAATGCAGAGAAAAAAA 23609 30 100.0 35 .............................. TAAAATTAATAAGGAGGTAGAAGAGAAATGAATGA 23674 30 100.0 35 .............................. ATGGTAAAGGGTGCTACAAGATAGGTGGGTGTAAG 23739 30 93.3 56 ............................GG TGGGGAAGAGGAATGGAAACTCTGACGAAATATCAACGGACGAGCACACAGCAAAG 23825 30 93.3 55 ............................GG GGTGGAGAGGAATGGAAACGACTCAGAGGAAAGATATTTAAAGAGTGTAGGGAAG 23910 30 93.3 242 ............................GG GGTGGAGAGGAATGGAAGATGAGGAAAGGAATGAAAACAATACTATCTCTACGCTTCCAAGTAATGCTTCCTTACTTCTAACTTTATTTTAATGAACTGAAAATAGGAAAGAAAAGATAACCTGTAAATGTGAGGCTTTTTTTCTTCCTTTTGTTCGAAAAGAAACGAAAGGGATAAAGGAATGGAAGATAAGGTTAGGGATGAAGCAGAAGCTTCGACGATTGATCACTTATATCGTCGTT 24182 30 70.0 0 T.......T...A.A..A.AA...TA.... | ========== ====== ====== ====== ============================== ================================================================================================================================================================================================================================================== ================== 68 30 99.2 40 CTTTTTATCCTACCTATGAGGAATGGAAAC # Left flank : AAAGAAACATTATCAAAAAACTCTATTGTTTTATCCTTTCTATTTAAAATAAATTTTCCATTTAGTCTAGAGAAAGAAAACAATTTGTACTTTCTTTTCTCATAATTAAAGCCCTTGTTATGAACGAAGCTTCTATATTGTGCATCATCTATTAAATCAAGAATGAAAGCTTGAATGATATGATTATAATTTACTGGAAGTATTAAGTTATGAAAAGAAAATTGAACGTTTAATCTCATTTCAATTCTCCCGATATTTTAAATTAAAAATTAAAATCTTTACTGTAATATATTTTATCATACGATAATAAAAAAAGCAAGAAAGTATAAAAAAACATCTGTCGACCACCAATAAGATAAAAATCCCCGGGGATCGACAGACAAGTGTTAAAATTCACAAGCCTTATACCATGTTTATTTGAATTGATTTTTAACAATTTCTCAAAGTTTTGCTTGACAATCGTAATTTTTTATGATACAGTATCTATAGATAGCTTATGT # Right flank : CATTCTTTAAAGCATCTTTCTTGATTCTTCGCTTTTTTCTTATCCTAAGAGCAAATCCGACGATCAAATAAAGGAAAATATTCTAAATATAACCTTCGAAGAACTAAAAGCGTTATTGAAAGCTAATGCAAATTAATGAATTTTTTTAGATTTTTAGATGATATAATGGGGTTGAAAACAAATTATATGAACCATGAGGAATAAGAGGATTGTTAGGAACATTGTTAATATTTCAATAGTTAAATAACTCACTAAGAAGGGGAGCAGGATGATAATTGAAAGAGTTATACAAGAAGCACAGCCTTATTTAGAAGGAATAAAGATCAAAGATGCGGTTATAGGAATTTCACTTATTGGTTTGGAACTGAGCAATAATCATGTCGGCGTAAGTTACGTTCTACGTGAGAATTTAAAGTCAGGTTGCTCTATTTTCCCGTATGTCCAGGACATTATTGATAAAGATAGTTTAGAGATTGCCGAATGGGCTCTCACAGGTCAAG # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.31, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTATCCTACCTATGAGGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.60,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 82774-83509 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZRJ01000001.1 Petrotoga sp. HWHPT.55.6.3 HWH.6.3_contig_1, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================== ================================================================================================================================== ================== 82774 22 100.0 130 ...................... AGATACAAACGTCGTTTGCGTAGTACATCATTTGCGTAGCAAACGAGAATATGGAAGTTGATTCTAAGACATTATGAAGAGAACGTTTTGCACAGATCAGCAAAAAAGCGTTTTGCATAAAGCAGCAAAA 82926 22 100.0 88 ...................... AGACACAAACGTCGTTTGCAGAGCAAACGAGAATTCGGAAAGAGTTTCTAAAGCATTATGAGAAAAGTTTTTGCACAAAGCGGCAAAA 83036 22 100.0 88 ...................... AGATACAAACGTCGTTTGCAAAGCAAACGAGAATATGGAAGTTAATTCTAAAGCATTATGAAAAAAGTTTTTGCACAAAGCGGCAAAA 83146 22 95.5 50 ...................A.. GATACCGGGCGAAAAGCTTTAACACTTATGTAAGAATAAATATTCCTGTT 83218 22 95.5 47 ...................A.. GGCACTTTTTTTCCCTGCAACATTGAATGGATCTTGTTCCCGTGGTT 83287 22 95.5 48 ...................A.. GGCACTAGAATTCTACGTTGATGGTTCTTATAATTCGGTAACAGAGTT 83357 22 95.5 45 ...................A.. GGCACACAATTATGTATGAGCGTGAAAGATTAGCGAAGGAGTGTT 83424 22 95.5 42 ...................A.. GGTACGAAAAATCTGCTGAAAAACAAATTAAAACTTTATGTT 83488 22 95.5 0 ...................A.. | ========== ====== ====== ====== ====================== ================================================================================================================================== ================== 9 22 97.0 67 TTTATTCCTTAAAGGTAGGCTA # Left flank : CTATTTTTGTGATCGTTGGTATTGTTAGGAGGAGTAATGTAGTAATTATCTAAATTCCAGTCTTTAACTTCTATAATTAATACTCCATGCGATTTTTTCATTAATACAATGTCTGGATTATCTCCGTTTATATTTGGTTGAAAAAAGACCTCCAATTCGTTGTCAGGATATGCTTTCAAAAAATTTAGAATCTCCCACTCACCTTTAGTGGGGGGGACTTTCATTTCACTTATTGCATTAATTGCAGGAAAAATTTTAGCCACCAAACTTCAACCCCCTTTCTATGAATTATAAATTTTTGATTACTTTAGACCGTAAATTGACTAATCACCACCTTTTAACTAGATATTTGGTATTTTAAACTACCTTCATGTTATTATGAGGCAGTTATACTGTAATTTTAGTTTTTTATTATTTTATCGGTGTTGTAGAAGCTTTTATCTTTTTTATAGCTAAAAATAAAAAACGCCAGTTAAAGGCGTCTTGTTCAAATCAGAAAA # Right flank : AGATACTCATAGGTTCACGATAAAAAGTGTATCATAAAAAATTACATTTGTCAAGCAAAACTTTGAGAAATTGTTAAAAATCAATTCAAATACTTATGAAATTGATCTTGTGACTTTTAGCACTTGTCTGTCGATCCCCTGGGTTTTTTACCTTATTGGAGGTCGACAGACATTTTTTCTATATCATTTTCTGGTTTAGGTTAAATAAATAAGTACTATAAAATATACACTAGGTGATGAGATTTTAGTTCAATCAGTAAAAGCCGAATAAAGATTTAAGAAATTCAAATATTGCACTAAGAATCATAATAATCAATAAAACCAGAAAGAACCAACCGATATTTGCAAATATATCTTTTATTTTACTTGATTTAGGTTCTTTTTGATTAGAAGTTGGCTTGGGTTTTATTGTGTTTTCATCAACAATTCGTTCTTTTGATTGAGCTTCATTTTGTGATTCGGGACTTTGTTCTTCGAGGTTTGTTTTTGTTTCTTGAATT # Questionable array : NO Score: 2.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:-0.25, 7:-2.34, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTATTCCTTAAAGGTAGGCTA # Alternate repeat : TTTATTCCTTAAAGGTAGGATA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.18%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 95267-94581 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZRJ01000001.1 Petrotoga sp. HWHPT.55.6.3 HWH.6.3_contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================================================================== ================== 95266 30 96.7 36 ...............C.............. AGAGTTCCAAGACACGTGGGGAAACAACCATGGATT 95200 30 96.7 38 ...............C.............. GCAATTATAACTCCATTCTCTTTTGTAAAATAAATGTC 95132 30 100.0 38 .............................. GGGTCATAATAATATTTCATTTTTTTCCTCCTAAGATT 95064 30 100.0 37 .............................. CTTTCTTTGCGTCGCTCCATTCAGAGGATGATTGTTC 94997 30 100.0 36 .............................. TTGGAATTTGTAGTTGATGTTAGAGTGGCTTTTCTT 94931 30 100.0 45 .............................. ATTCTTCCCTAAATTTTGTTGCTACCTCATAGGTTCTTGGTTCAT 94856 30 100.0 39 .............................. ATTTCTTTTTTCATTTCAGACAATAATTGTTTAGAAATA 94787 30 100.0 37 .............................. TCTACAGCAACTATTCTATAATCCCCAGAATAGCCGA 94720 30 90.0 79 ...........................TTT TGCCGCCTAATGCAAAACGCCTTTTTCACGATGCCTTAGAAACTTTTTCCTAACCTCGTTTGCATTGCAAACGACGTAT 94611 30 83.3 0 ...C...G.............G..GG.... | T [94605] ========== ====== ====== ====== ============================== =============================================================================== ================== 10 30 96.7 43 GTGTCTATCCTACCTTTAAGGAATAAAAAC # Left flank : AGAGAAAGATTGTCGACACTTAGTTTTATAAAAAGCCTCATCTTATCACCTCGTGTATATTATAACACTTAGGAAAAAAATCTAAAATAAGATAAGAGAAAAGGTTATTGAAAGCTTACGGTTTATCTCTATAATCCTGATGTTCGATCTGATTTTTACAACAATTTTCTTTTAAAATTGTTGATAGTGAGTATAACAAAAATACCAATTCATAAAATAAGATGGCATTTTGCTGCCAATACAACCTCAAGTTAAACAAAAAAGCCGCCTAGATTAACTTCCAATAAACTAATATTTATCTATTTAACATAAAGCAGAAAATGATATAAAAAAATGTCTGTCGACCTCCAATAGGGTAAAAAACCCAGGGGATCGACAGACATGTGTTAAAAGTCACAAGGCTTCTTCCATAAGCCTTTGAATTGATTTTTAACAATTCGTCAAAGTTTTGCTTGACAATTGTAATTTTTTATGATACACTTTTTATCGTGAACCTATGG # Right flank : ACTTGCAAGGGTATTGAAAAATGCCCTTACGGTATCACCTTTATCCTACCTATGAGGAACGAAATAAATTTTGCTGCTTACAGCGAAAACTTTTTTCATAATACCTTAGAAACTCTTTCCAAACCCTCATTTACTTAGCAAACTACGCCTAATTTTTTACCTGCATAAAAAAATAACTTTTAAAGTTTTATATGAGAATACGTTATGAAAAGGATAGTTTTCTATCCTGTTTTTGTGTATGAAAAAGTCCAAAATTTCTAAAAAATTGGAGTGATTCCTTTGCTTAAACCAACTTTAGAACAGAAAGCTATCGTAGACGCAAATTTCAAAGACATTCTTCTTGTTAATGCTTATGCAGGAACTGGCAAAACCTCAACTCTTGTTCAATTTGCCCAAGCTAGACCCCGAGAAAAGATACTTGTTTTGGCTTACAACCGTTCTATGAAGGAAGAGGGAGAAAGAAAATTTGCTTGTTTGCCTAATGTTACTGTTAAGACAAT # Questionable array : NO Score: 2.71 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.38, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTCTATCCTACCTTTAAGGAATAAAAAC # Alternate repeat : GTGTCTATCCTACCTCTAAGGAATAAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA //