Array 1 64940-64056 **** Predicted by CRISPRDetect 2.4 *** >NZ_VNXE01000086.1 Escherichia sp. HH41S NODE_3_length_390783_cov_156.797610, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 64939 29 100.0 32 ............................. CTGGCAGCACTGCGGGAAATATTGTTGCTGCT 64878 29 96.6 32 ............................T TAAATGTTAAGTATTCTGACCCGCCTCACGCC 64817 29 100.0 32 ............................. ATACCCGGTAGCAATTTACTCAACGTGGCGTT 64756 29 100.0 32 ............................. CGGGCCAACTCCCGCAGGTTTTCGCTATACGG 64695 29 100.0 32 ............................. AGACATACCGCATTTTCAATTGTCTCCGCACC 64634 29 100.0 32 ............................. CGAAACCCGCCCCGGTTGAAAAAGTCGCCAGT 64573 29 100.0 32 ............................. AGTTGACGGGTAAAGCGGCGGTATACGGCGAC 64512 29 100.0 32 ............................. ACTGTTGAACATGGATTTCGTGCCGTCCAGTT 64451 29 100.0 32 ............................. AAAATAGTGAATGATGTATTTTTTCTCTATCG 64390 29 100.0 33 ............................. CACGGTTAAAATTTGCCGCCGTTATTGCTGGGC 64328 29 100.0 32 ............................. GGTCAATTGTCCGCGTTCGTCGGCCAGTCCAT 64267 29 96.6 32 ............................T TTCAGTGATGCGTTTTCACTTTCCAGTGCTGC 64206 29 100.0 32 ............................. TGGTCATTATAGGTTAACCTATAATTTAAGCA 64145 29 100.0 32 ............................. TCGACAATGGATAAGTTGACTTCAGGTCTGGG 64084 29 93.1 0 .A..................A........ | ========== ====== ====== ====== ============================= ================================= ================== 15 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGACGCCGGTGAAATTGAACCACCACAACCTGCGCCGGATATGTTACCGCCAGCTATCCCGGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCAGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTTCCGCCGCGCTTACGTGGACGGCTCGCGATCTGGCTACTGGAAGTGCGTGCTGGTGTTTATGTTGGTGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCCCAACTGGCAGGTTGCGGAAATGTGGTCATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGTGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGGTTGGTTTCGTTTCTTCCTGTTGAGAATCAATAAGTTACCCGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAAATTGTTTAAAAACAGATACGTATGCTTAGT # Right flank : TGCAGTACGCCTGATGACAAACCAAGCATCGGGAGTTCCCCCGCGTCAGCGGGGGAACTCCCAGCTCCCATTTTCAAACGCCTCATGACGCCTTCGCCAGTTCCTTCACCAGCGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGCTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCCGGGAAGGCCGGTGTTTTTGCGCGTTGCTGATAACCATCTTTATTTCCCAGATTCCAGTTTGTTGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCTGCATCGTTACAGCACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCTGGATTTGTTGTCGCTGCAATCCCATGATTATGCGCAATTGCCAGCGCTCGATCACGGGTTAATTTCCTGACAGCCTCTGGTGTATTTACACCACTATTAAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 91342-90642 **** Predicted by CRISPRDetect 2.4 *** >NZ_VNXE01000086.1 Escherichia sp. HH41S NODE_3_length_390783_cov_156.797610, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 91341 29 96.6 32 ...........................T. TGACCAAACTTGTGATGAGGAAAGACCAACGA 91280 29 93.1 32 ...........................TT TGCAGGGAGTAGATCAACAGTTATTAAAATCC 91219 29 96.6 32 ...........................T. ATTTTTTCCGTTAGTTGGTGAGCGTGATGACA 91158 29 100.0 32 ............................. CGTTTCGGCTGATTTGTTCGCCGCGTCGGTGC 91097 29 100.0 32 ............................. GCGAAAAAATACGGCTGGATGCGACAAAAAAA 91036 29 100.0 32 ............................. TCTGACCAACTTCAGCCGCAGAACGGCCCCGC 90975 29 96.6 32 ............................T GAAATCGCGGGAGAGAGTTCGCGCATTATCAG 90914 29 100.0 32 ............................. CCGCGTTTCAATTGATGTAGAGACGGTTCTTG 90853 29 100.0 32 ............................. CTGGGGCAGGCGACAGGAACGCAGTCTGAACC 90792 29 93.1 32 .........G..C................ TAAGATGATCTCACGGAATTGAACGAACTACG 90731 29 93.1 32 .........G..C................ GACACAGAGCGCCGCTATAGCGCCTATGCCAA 90670 29 93.1 0 ....................A.......A | ========== ====== ====== ====== ============================= ================================ ================== 12 29 96.8 32 GAGTTCCCCACGTCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCACGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGCAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTGCTCATTTATATTCTTTGTCGCCTCTGAAAAACCTCCATTTTGCCCGTCCTAAACTAATCATTATCATTCTCTATAAATTCTATGGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCGGTAAAGTTTGGTGGATTTTAGTCGGTATAGGATTACTTTAAATATTTAGCTTTTCAATCAATGAATTAAGTGCTCTTTAACATAATGGGTGTGTTGTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGAATTAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGCTCTCCATATATGAAAAGTTCACAATTATCGATACAAAAAATCAAATTTAATTAAAGTGTTAGTTGTATGATACTTAAATCATTAAGAAATTATCATATATTATTTTTTTAATATTGAATTGATATTTGTTAATTTTTTCTTTAGGGTAATAGTTTGTTTTTTAAGCTTATTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATAGGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAATGAAAATTGATAAAGTACGGTTTGCGTTGTCTTTTATTCTAAGGACATCGAGTGTAGTTAATATTCCTTGTAACAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCACGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCACGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.10,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //