Array 1 529498-530473 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014854.1 Thermococcus celer Vu 13 = JCM 8558 strain Vu 13 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================= ================== 529498 29 100.0 39 ............................. GTTTTCAAAGTTTATAAACTTTTCGATCTTTGGCAAGAA 529566 29 100.0 39 ............................. TAGTCCCCTATCGAGATTATGTCCGCCCTCTTGACGAGA 529634 29 100.0 49 ............................. GTGGAAATACCGCAGTGGTCGATAGATTTAGTTTTTGGCTTTCCACACG 529712 29 100.0 40 ............................. CTCATCACCTCAATACTCAACAACTTCACCATCAACCTGT 529781 29 100.0 37 ............................. CCGCTTTTCCCGTTGATCCGTTCCATTACGTCGAAAA 529847 29 100.0 38 ............................. ATGAGCTCATCTATCCGCTCTTCATATATCAGATCTAA 529914 29 100.0 37 ............................. GAATAGTCAACAAATTACCACCGTTATAGGAGAAAAG 529980 29 100.0 38 ............................. CGAGATAAAAACCTCCAAACACATGCTTGAATGTCACA 530047 29 100.0 36 ............................. GGGTCCCGGGTAATCATATATATATGGCCCGGGTAA 530112 29 100.0 40 ............................. ACCACGACCCCCCCAGCGAGGCGGGGGTCGTACGTGGCCA 530181 29 100.0 41 ............................. TTAATTCTTCCCGTTCCTGCATTTGCGAGTACCGCCGGAAT 530251 29 100.0 34 ............................. TGCGATACCGATATACCCTTTCAATCAACTGTAG 530314 29 100.0 35 ............................. ACTTCGTCGTGGGACGGGAGTAATCCCGTTCCCAT 530378 29 100.0 38 ............................. TCTCCTCCCCCCAATCGCAGCAGTTTACGAGATCCCAG 530445 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================================= ================== 15 29 100.0 39 GTTTCCGTAGAACGGTATCGTGTGGAAAG # Left flank : GGTGGCATCCTCGGAAAGAAGAGGAATTTAGCGGGCGTTGGCGACCGACGGGTTTCCTGTCTGATTGGAACACAGTATCATTGTCTTTTTCACGCCCCGTTTCCAGTTTAAAGTGCCCGGGAGTCGGTTTCCTTCTCGATTACCTACCCGGTGGTAATTTTTCTTCAGATGTGTGCATTTTAACGTGGGAGGTTACACGGAGCCCAAATAGCGAACGGGGCATTTTCGAGGCATTTTAGATGGTAGAGAATCAACGGGAGGGGACCGTTAGTCTCCCCATCTCCTGTTTGGACGTTAAATCCGGTGAAGGGGATTTCGATTTCCCTGAATTGTTTAAGAACCTCCACCGTGCCACCACCCGGTTAACGAGGAATCGTAAGGCCTTTGAATTTTTGCGGATACCTTTTTAAATGAAGCGCGTTGACACGGGTTCCCGGAGAAAGTCTTAAATAGGAGTTACTGCATTCCTCTAATTGCCAGATGGAAGGTAAAAGTCAAGG # Right flank : GGAGCTGGAATCAGCTCGCACTTAGGGGTCCTTCGGGCAACAACGTATAATCACGCCTGCTGGGGAGGGGTTTAACTCCGAGGATAACCACCGGCAGGTTTCGACATTTTATCCGCGCTCAACAGGCGCCCTTGGAGGACGAAACTCCGTAAACAAGCGATTCAAAGATTAAACCCAAAAATGAGACTAACCACATAGATGCACTAAAATTTCCGCCATCCACCAGGATGTTCGGTGAGAAGGGCGCTTGCGAGGCAGGCTGTTAAGGGGGCCTTTCCGTGAAGAAGCCGTATTACATCACCCGGATGGGGGTTCTCGAGAGGAGGGGGAACACCCTCTTCTTCGAGAACGAGGAGATGAGGAAGGCCATACCCATCAACTCGACGAGCGAGGTGCACTGCTTCAGGCCGGTTACCCTGACGAGCGGGGCGATAAAGCTCCTCTCCGAGAAGAACGTTCCGGTCCACTTCTACAACAAGTACGGCTACTACCGCGGCTCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTAGAACGGTATCGTGTGGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 2 1567996-1567557 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014854.1 Thermococcus celer Vu 13 = JCM 8558 strain Vu 13 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 1567995 30 100.0 38 .............................. ATGGCGGTCTTAACCTCATGAACGCCGAAATCGGAACT 1567927 30 100.0 40 .............................. AGGGATAAAATTATTCTGAGATAAAATTATTCTGAGGTGA 1567857 30 100.0 37 .............................. TGTTCAGCTCAATCAGCACGTAGCCCCCTGATGCCGC 1567790 30 100.0 38 .............................. ACGTCCTTGTGCTCCTCGAGGTAGTCCTTTAGCCTCGA 1567722 30 100.0 38 .............................. GTGTGAGTTTAGCCAGTAATTAACGGCCCTCTGGACGG 1567654 30 100.0 37 .............................. TGGCTTGAAGTAACCGCCCGTATTCACGGGGAGCTAT 1567587 30 96.7 0 ...........................T.. | C [1567559] ========== ====== ====== ====== ============================== ======================================== ================== 7 30 99.5 38 GTTGCAATAAGACTCGAGGAGAATTGAAAG # Left flank : GTGTGGAAGCTCAGGGAGCTCGGTTTTGAGGTTTTATCACGTTGAGGCCGTTCTTTTGTTTTAGAATCCAGTTTAAATTCCTGTATTCAGATTTTGACGCATCGAGACGCTTTGGAAAATCGATTTTTACCCTTTTTTATTTGTTACGTATTGTTCTATTTTTTACCTTGGACTGTAACTAAATTTTTTCGGAGTTCGGAGTCGGGCCGTTAGATGTCTGGAAATTGCCCAGATCCTATTGAAGGTGTTTGTTTTTGAGTTTAACGGTTTTTAATCCGATTTTTCGGGTTTTAACGCTCTCTTCTCGCGCTGGAAATCGCGTGGACTTTGTTGTTCATTGTGTTTTCGGGGGTTGGTGGGGTTTTGGAGGGTCATTATCTGCTCTCTAAGGGCGTGGATCCGGGCTTTCTTCAGGCTCTTTTTGTGGTCTTTTCCCAAAAAGCTTAAATATTCGAGCGTTATTATAGTCCCACTGGAGAAACGGGGCGAAAACCCCGCCT # Right flank : CCTTTTGGGAAAAGGCTGGCGAAAAGGGTGTTTTCTTTTGAAAATTCAAAGAATGATAAGCGTGCACTTTAAAATTGGGGATAAGATAGTGGATTAACCTTAAAACAAGATATTAAGCAGGTTTCACGGTTATTCTGGCGCCCTTCGGGCGCCTTGTGGACAGGAAACCCTGCAAAATGGACAAGTTGAGTGTTAATCCACGCTAAAACACCGAACTTTAAAACCGCACGCCAGTTTTCCGCCATCCGCCAGGATGTTCGAACGAGGATGAGAAGGGCGCTTTGCTAAGTAAAAGACTATACAAAAAACAGTGGGATGGAGCTTCTTCTAAACGGCCGCTCACCCCTCCGCCCTGAGCTTAAGTGAGGTGTGCTCCTGCTTGAGTTCCTCCAGCTTCTCGAGTATCTCCTCGCTCGTTTTCTTGAGGTGCAGCGCGAGTTCCTCAAGTTCCTTTATCCGCTCGTCCAGCTCCCTCTCGCGCTCCTCGACCTCCTCCATCG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCGAGGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA //