Array 1 1048-409 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNAE01000012.1 Escherichia coli strain WW63 NODE_12_length_93214_cov_19.1819, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1047 29 100.0 32 ............................. ATACGCCCCAACCAGAAATAAATTTAGGGGAT 986 29 100.0 32 ............................. CAATATTCACAATGTGGGATATATCCGATCAC 925 29 100.0 32 ............................. CGACCGCGTGGGCGTCTACGTGGGGGATTAGA 864 29 100.0 32 ............................. TGGGTCATGCCGGTGATCGCCTGCCCGTCGTG 803 29 100.0 32 ............................. GCGGCGCAGGGATTCGTACAGTCAAAAACGCC 742 29 100.0 32 ............................. AGTTGGGGCGGCGCAATAACGAGACGATACGC 681 29 100.0 32 ............................. GGGAGTGGCACTTCTGGGGTAGCGGCGGCCCT 620 29 96.6 32 ................T............ TCAACGCGCTCAGACGTTGCGTGAGTGAACCA 559 29 100.0 32 ............................. AAATATCCAGGGCTGGGCTGGAGGCAGACGGC 498 29 100.0 32 ............................. CCCGGAATGCATTCTGAAGGTTTGCTGTATAT 437 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAATTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGAATAAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACTGCCTCTATGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATGGAACAGGGTTCAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 81901-80651 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNAE01000013.1 Escherichia coli strain WW63 NODE_13_length_90790_cov_20.2217, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 81900 29 100.0 32 ............................. TTTCAGAAAAGTACGGCTCAATTGATCGCCCC 81839 29 100.0 32 ............................. CGCTGGTGGCGGAAAACAGCCAAAATAACGCA 81778 29 100.0 33 ............................. TGGATTAATCCGCGGCTGGCGATATCTCGCAGC 81716 29 100.0 32 ............................. CCCCTGTCGCCGTTGGCGGATTCTTTCCTGTA 81655 29 100.0 32 ............................. CGATAAACGCTCAATACCAGCCGGAATAATCG 81594 29 100.0 32 ............................. GCGGAATCTGCTGCGCACAAGTTACACGGCGC 81533 29 100.0 32 ............................. CCTTGATCGGATTCCAGAAACGAACCACTAAA 81472 29 100.0 32 ............................. TCGTTTAGTGTGGAATTTGGCGACGCGGAGCG 81411 29 100.0 32 ............................. TTTAGCTAATATTGGGCGGCTAACGTCATCAA 81350 29 100.0 32 ............................. GTTAAATATTGTTCACCATCATGGATCAGGAA 81289 29 100.0 32 ............................. CATGAACATGGACGATGAAAAAATAAGGGAGG 81228 29 100.0 32 ............................. AATTAAATGATTTTGATGCGCGCCGACTTGAA 81167 29 100.0 32 ............................. CCACGCGGCTGCATTCAGTGATATCCAGTTTG 81106 29 100.0 32 ............................. CATCTATTTATCTCGCCGCGATTGGCGATAAC 81045 29 100.0 32 ............................. CCGAACGGCTGGCGAAGCAGGTGGCTGGCGTA 80984 29 100.0 32 ............................. GTTTACCGCCCCGCAGAGGCGCTGGCAGATCC 80923 29 100.0 32 ............................. GGATGACCTGTCGCTAAAACTCGCCGCGTACA 80862 29 100.0 32 ............................. TCCGTTTGGTCCACCAAATGTTTGATGCTTCA 80801 29 100.0 32 ............................. TTCAGGGTGTGATTCCGCATACCAAGCAGTAA 80740 29 96.6 32 .A........................... GGCGCACTGGATGCGATGATGGATATCACTTA 80679 28 72.4 0 .AA........C..T....T-.G.....C | C [80654] ========== ====== ====== ====== ============================= ================================= ================== 21 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : AGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //