Array 1 1123033-1121706 		**** Predicted by CRISPRDetect 2.4 *** 
>NC_009635.1 Methanococcus aeolicus Nankai-3, complete sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                      	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	=====================================	=====================================	==================
   1123032	    37	 100.0	    33	.....................................	ATGACCTGCACAATAGAGATAATAACGCCACAA    	
   1122962	    37	 100.0	    33	.....................................	AGAGGCAAAATATGAAAACAATATCAAAAATAT    	
   1122892	    37	 100.0	    33	.....................................	AGAGGCAAAATATGAAAACAATATCAAAAATAT    	
   1122822	    37	 100.0	    34	.....................................	GGATTTGCAATAATTTCAATGATTCCATCAGATC   	
   1122751	    37	 100.0	    34	.....................................	ATGGAATTAATCAAAATTATGAATGGCTCCAAAA   	
   1122680	    37	 100.0	    37	.....................................	TTGAAATTTGATTTAACAGACACCGACATAACAACAA	
   1122606	    37	 100.0	    37	.....................................	TTTACCTCCGTATAGTCTGATAATGTTTTTACTGTCC	
   1122532	    37	 100.0	    36	.....................................	TTTTGTAATATCGACATATTTGAATTTATATATGCA 	
   1122459	    37	 100.0	    34	.....................................	ATGGAATTAATCAAAATTATGAATGGCTCCAAAA   	
   1122388	    37	 100.0	    37	.....................................	TTGAAATTTGATTTAACAGACACCGACATAACAACAA	
   1122314	    37	 100.0	    37	.....................................	TTTACCTCCGTATAGTCTGATAATGTTTTTACTGTCC	
   1122240	    37	 100.0	    36	.....................................	TTTTGTAATATCGACATATTTGAATTTATATATGCA 	
   1122167	    37	 100.0	    37	.....................................	GCTACGCCGTAAAATTATTAATGAGATATAAGGGAAA	
   1122093	    37	 100.0	    32	.....................................	ACCTTTCCAACTCCTGCAAGGGCTAACTCCAA     	
   1122024	    37	 100.0	    34	.....................................	TGCCACAACTACCAAATTGGTGAGATATTATGTC   	
   1121953	    37	 100.0	    36	.....................................	ATATTCAATGCTCTGCAACATCATGCGAAATAATTA 	
   1121880	    37	 100.0	    32	.....................................	GAACTGTAATTATGAAGCTACCACAATGGAAA     	
   1121811	    37	 100.0	    32	.....................................	CCAAAACAGATTATAGCCATAAGTGAACACGA     	
   1121742	    37	  97.3	     0	............................T........	|                                    	
==========	======	======	======	=====================================	=====================================	==================
        19	    37	  99.9	    35	GTTTCCATCCTTGTTTTAATGGATGTGTCTTTTAGAC	                                     	       

# Left flank :   ATTATTCAGATGAAATTAGAGTATATGAAAAAATACAGAAAAAGTATAAAAAGAACCATAACAACTTAAGACACACAACAATAGTGGCTCATGGTTTTGAAGGGATAAATAAAGAAAAAATAAATAAAATGCTGGAACAGAATGGAGTCAATGAAGATATTAATAATTATTTCAAAAGTATTAAATCAGAATTCTTCAAAATCGCAAATAGTAAAGAAAAAGAAAACATATTTGACAAATTAAATAAGGAAATAATAAATCATTTATAACCTTATATATTGTATTTAAACTAATTATTACCCATAACAATATAAAAAACTAAAAACTACACGCCACCTGAGCTCTATTATGTATATTATAATAATTAGCATCTCTGTTTGATAGGAATTAGAGTTGATAAAATTACCAAACGATTGAGATTGTTCAATTACGAAGTATAATTATTTTGAATGCTAATTATGATTAAACTGATTTCTCGGAGCTCCAAGGATACATATACA
# Right flank :  CCTATACTTCTTACCTTCTTTTATGGTTTTTCTCCCTTATATGCCTTTCGATTTTTATCAATTTTTTCTTACTGGTTGATTATCAAATAGTATATAAAATCAAGAAAGCAATATTAATATTTCTAATCACATACATTAAAAATATTAATTACATTTATATACTCCAAATTTTTAAAAATTTCTATTTAGTTTTTATTTTATATATACTACACAGTTCAAGCGTATATTTGCATAATAATAATAAATAAAAAGAATAAACAAAAAATAAGTATAATATTCAAATATTAATAGTAATACTTTTTCGCATTTTTCTAGTACTATTTTTACCAAGGTAGTATATAAATCTCAGAATTCCTTCGGAATTCATACGATGCCGTAGGCAGTAAAAAAATCCATAGGATTTTTTCTGACTTACTCGCTGAGCTCGTAAGAGCAAGAAAGCAAAATTAGAAAAACTAATATATAATATCAAAAATATTAATCACTTACAACACACATTC

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTCCATCCTTGTTTTAATGGATGTGTCTTTTAGAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:64.86%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  NA [-5.00,-5.20] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [1-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,0.41   Confidence: MEDIUM] 

# Array family : NA
//