Array 1 53634-51507 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYPA01000023.1 Paenibacillus oryzae strain 1DrF-4 C1271, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 53633 32 100.0 33 ................................ CTCCCTCAAGTCATCAGAATCAAGGACAAGCCC 53568 32 100.0 33 ................................ CAGGCTTGTGCGAGTTACAATATCACCATCTGC 53503 32 100.0 34 ................................ AGAAAATTGTGGACTTTGGTCGCCAATCAATCCA 53437 32 100.0 34 ................................ TGCGCTGCCCTGCGTAGTCAAGGAGTGGTGAATT 53371 32 100.0 33 ................................ CTGCCGCGCTAGTCGATGCAACAGGAAGACGCG 53306 32 100.0 33 ................................ TCTACAGTCGCTAGCGCTCCGATATGTGCAAAC 53241 32 100.0 33 ................................ ACGCACCCGATACAGTTATTGTTGCGATAACCC 53176 32 100.0 34 ................................ ACGGCTGATTTCTACGCCGTAATAGTTTCGGCCC 53110 32 100.0 34 ................................ TGCAATGGGCGCCGGCATTACGAGATTCTGGCCA 53044 32 100.0 34 ................................ ATCCCAACGGCCAGAAACCTTGTTTAGCGCCAGA 52978 32 100.0 33 ................................ TGATGCGTTTGGTTCACAATAAATCTGCACCTT 52913 32 100.0 34 ................................ TCCAACAGAATGCGCACGATCTACATTTTTCTTT 52847 32 100.0 33 ................................ AACCGACCAACTGCAACCCTCCGTAAACGACCA 52782 32 100.0 33 ................................ ACGAGTATATCGGCATGTATGTTTTGCTTATCC 52717 32 100.0 33 ................................ CTTCTCTCGTTGGTTGAGCGATGCCCACTGCAA 52652 32 100.0 33 ................................ GAGAGCAGAATGCGTGAAGATAATTAGACAGCG 52587 32 100.0 34 ................................ ATAATGGTCACCATCCCTTTAGTATCAACGGCTC 52521 32 100.0 34 ................................ CCGCACGTGGGCGGCTCCAACAGCGCTGTAAACG 52455 32 100.0 32 ................................ ATAGAAGGCAGATGGAGTTAAATAGTTATGAG 52391 32 100.0 33 ................................ AGCAACACAAAACGATCTTGCCAATACCGCCTT 52326 32 100.0 34 ................................ GGATTACCTTTTTCAAACATATTTGAGTCGTGGG 52260 32 100.0 34 ................................ GTAAAGGGTAAGAAAACAATCGCCATGTTTACAC 52194 32 100.0 34 ................................ CATCCGTCAACGCAGTATTGTAGTAGTTTAGCTG 52128 32 100.0 33 ................................ CAGCGCCCAGCGTGTGACTGCGCCATCCCCATG 52063 32 96.9 34 ...............................T ACAAATTGATGCCAGCGTCAGGCGTATATATGAA 51997 32 100.0 34 ................................ CATTCTTCGGATGGTTTCTAATGACTCGCGGGCC 51931 32 100.0 33 ................................ AAGTGCCTTTAGTGATTTAAGATCAACGTTTAA 51866 32 100.0 34 ................................ GTAAGGGGGATCTCGCTCTTTTTACGACCTGCAC 51800 32 100.0 33 ................................ GGCTGGCATTTGAATGGTCTAAGTAAATAGATA 51735 32 100.0 33 ................................ GCTGGTAACGGGCGGGGATTAAGAGGGGGAATT 51670 32 100.0 34 ................................ ATCCCCCTTGCCATCGACAACACCGCTGCACCAA 51604 32 96.9 34 ...................T............ TTGGATAGTAACCGCGTTGTCTATCAAAAATTAA 51538 32 93.8 0 .........C.T.................... | ========== ====== ====== ====== ================================ ================================== ================== 33 32 99.6 34 GTCGCTCCTTACGCAGGAGCGTGGATTGAAAC # Left flank : ATTGAATCGCATGTCGCTCCTTGTACGGGAGCGTGGATTGAAACTAGCTGGTGAATCGGAGGAGGCCATCTCGAAAAGTCGCTCCTTGTACGGGAGCGTGGATTGAAACTGATGGCTGTCGGCATACCCGGCAAACGGAAAAATGCCGAGGCTTCTCATCAATGGTTTACAGCTAGTAGGCAGGATAAAAATCAAACAAAAAAACGTTGCTGCTTGCATCAAAAGAATTTGATGAATTTTATGGTAATAATTAGTTGTGTGGAGCGGAGGTGAACTCAAAACATTGAATGAAATTTCGAATCGGAGGTGAGATTTAAATGCTGTGAAATCTAGTGCGAACCCCAAGCGCACATGAAATCCCTGGGAGATTCGCACCCCGCGTCCAGACTAGTTTTCTCATGAAATAACGTCGATTTTTGGAGGATTTCGAGTTACAATAATAGGGGTTCGCACTTTTGTGACTCCGAGCCCTTGCAGGGTAAGGGCTCGCGAGTGCCGCT # Right flank : CAGCAATACATAATTTGTATCCAAACAGCCAACAATAATTTTATCTAAAACCCTCCCGCAGCAGCAGGAGGGTTATTTTGGCTTCCTGGATGGGGGTTAGGAAGAGTTGTTGAGCGGAATGGTTGGGCGGGACAAATATAGTAAGCGCCTTCATAAACTTGAGATTACGTACCCATTCCGAAAGTTGAAGGATAGGATTCAAATGCGTCTTATTTTACGATAAACTTCAAATAGTATTTTTAATGTCACAAAACATAACAAAATACAGAGTAACTAATCCGATAACGGGGTGGGGCATATGCTGCGATGGTTAGGCAGCCATTTAAGGGAAAGCAAAATGCGGACAAGGCTGCTGCTCCTGTTTACGGTTTTGATTCTGCTTCCGCTTTGTTTGCAGGGAATCGTGACCTACCGCCATTTTTCGTCAACGATGAATGATAAAACGGAGCAATATACAATCGACATTGCGGGGCAGGTTAATGCAAACCTTGACCGGCTGT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTTACGCAGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.00,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 2 55563-54025 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYPA01000023.1 Paenibacillus oryzae strain 1DrF-4 C1271, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 55562 32 100.0 33 ................................ CTTTTTCCGGGGCGGCCATATCCAATTTAACGC 55497 32 100.0 33 ................................ TATTAGCGTAAAACTCCTTTGCGTCCACCACTT 55432 32 100.0 34 ................................ CAGTAGTTCGGGATTGTCCCAGCGGTTGCCAATT 55366 32 100.0 35 ................................ AACAAATGGATATACACCTAACCCCGTCGCAATAT 55299 32 100.0 32 ................................ AACCCATGAATAAAAGTTGGACAGGTTCACTC 55235 32 100.0 33 ................................ CGCAAATCATCAACGGTCTGTACCTCAATCCGC 55170 32 100.0 33 ................................ CCTCCCCCCCTCTTTAATCCAGATCAGGAGAGC 55105 32 100.0 33 ................................ AAAGAGCAATTCAATTGACTCAACAAGCGCCTC 55040 32 100.0 34 ................................ GAGGATCAATTGTCGAAACAATTTCATTTCCGTT 54974 32 100.0 33 ................................ ATATCCGGCGCGGGCTACTTTTAACTCCCGGTT 54909 32 100.0 33 ................................ ATTGCGGCATCACCTCCTGTATGAACCGCTCGA 54844 32 100.0 35 ................................ AAGCGGCTGTCCAGCATATCCAGCGTTTCGAGTTT 54777 32 100.0 35 ................................ CAGAGCTTGCTGGAGACGATGGAGCAGAGCTACAA 54710 32 100.0 33 ................................ TACTCCCGCCTGAATGCGAGGTTTGCGGCCATG 54645 32 100.0 33 ................................ AAACACATCGCCGCCTGGTGAATTAATGTATAT 54580 32 100.0 33 ................................ CGATATCTCTTCTACTGGCCTACTTGCATCGGC 54515 32 100.0 34 ................................ CTGGGAGCTGATCCGGAAGCTAAAAAACGAACAT 54449 32 100.0 34 ................................ TTTTCATATCAAGCATGGTCATATCAAAACCTCC 54383 32 100.0 33 ................................ GAATTTCGTATCAAGCGAAATCTCAGGCGATGG 54318 32 100.0 34 ................................ CAGATCGGCCAATTCCTCCGGTGTCGCTTGCCTT 54252 32 100.0 33 ................................ GCGGAACTGGCGGTGTACTGATGGCAAAAGTCA 54187 32 100.0 34 ................................ ATGGCTGCTGCATATTCGGCGTATTGAATCGCAT 54121 32 100.0 33 ................................ TAGCTGGTGAATCGGAGGAGGCCATCTCGAAAA 54056 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 24 32 100.0 34 GTCGCTCCTTGTACGGGAGCGTGGATTGAAAC # Left flank : TCTGGAAATAGGGGGTACACGCATTGCTGGTCCTGATTACTTATGATGTGAGCACAATCTCAACGGATGGGCAAAAACGATTAAGACAGGTTGCCAAAACTTGTGAAAATTATGGGCAGCGAGTACAGAATTCGGTTTTCGAGTGCCTGGTTGATCCCCAGCAGCTAAAGGAGTTACAAATAAAGCTGAAAAAAATTATTGAGCCAGAGTCAGATAGTTTGCGATTCTACCGTTTGGGCGCCAATTGGAAGGGGAAAGTTGAGCATGTGGGAGCCAAGCAGGGATATGACCCAGAGGGCTTCTTGATGATTTGAAAATGATCTGCGGCGTTTGCGAACCTTAAGCTTACATAAAATAGCGGGGAGGTTCGCAAAGGCTTGCTGGTACTGAATTTTAGGGTGTTTTGAGATTGGATGCGGAGTGTGCTTGTAGCCCAATAAAGCAGGTTCGCGGAAACCCGTCTGCCATCCCAATGCTGGCAAGGTTTTAAAGCACGTGCT # Right flank : TGATGGCTGTCGGCATACCCGGCAAACGGAAAAATGCCGAGGCTTCTCATCAATGGTTTACAGCTAGTAGGCAGGATAAAAATCAAACAAAAAAACGTTGCTGCTTGCATCAAAAGAATTTGATGAATTTTATGGTAATAATTAGTTGTGTGGAGCGGAGGTGAACTCAAAACATTGAATGAAATTTCGAATCGGAGGTGAGATTTAAATGCTGTGAAATCTAGTGCGAACCCCAAGCGCACATGAAATCCCTGGGAGATTCGCACCCCGCGTCCAGACTAGTTTTCTCATGAAATAACGTCGATTTTTGGAGGATTTCGAGTTACAATAATAGGGGTTCGCACTTTTGTGACTCCGAGCCCTTGCAGGGTAAGGGCTCGCGAGTGCCGCTGTCGCTCCTTACGCAGGAGCGTGGATTGAAACCTCCCTCAAGTCATCAGAATCAAGGACAAGCCCGTCGCTCCTTACGCAGGAGCGTGGATTGAAACCAGGCTTGTGCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTTGTACGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTTGTACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.70,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 65358-63887 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYPA01000023.1 Paenibacillus oryzae strain 1DrF-4 C1271, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 65357 32 100.0 33 ................................ CCTTGGGCTGGCGGTGCGTCTGATTGGCTGCCG 65292 32 100.0 33 ................................ CGTCAGCATATCAATTAATCGCTGGTAATACGA 65227 32 100.0 33 ................................ TACCGGAATCATGGATGCTGTTATCGCTCAAAT 65162 32 100.0 32 ................................ ATACACCGGATCCTTTGCTCCGGGCGATGAAC 65098 32 100.0 33 ................................ ATTTTGATGGCTCTTTCCAAATACTTTTTACCA 65033 32 100.0 34 ................................ CCCGACGGCCCCGAAGTCTTTAACATTGACGCCA 64967 32 100.0 33 ................................ TGGCGGCATCTGTGAACGTTGCTACAGGGCAAA 64902 32 100.0 34 ................................ ACCAGCGCTCTGCGATTGCCCTGTATAGCTTGTA 64836 32 100.0 33 ................................ TGGCAGTTGAGAGAATGAGGCCGCTGTCCCCAA 64771 32 100.0 33 ................................ ACTGGAGCGATGACAGGAGTGTTTTATGTGGTT 64706 32 100.0 35 ................................ ATGAGTACATCAAGCGGATTTCTGCCGCCAAGGTG 64639 32 100.0 34 ................................ GAGCTAATCGGCCAAGCGCGGGCGCTCCCTTGAA 64573 32 100.0 33 ................................ GTCTCGGAGGCCTGTGGCCAATTAGTTACTTTG 64508 32 100.0 33 ................................ TTCGCAATAGAAGAGGAAAGCTGTTTGAATCTC 64443 32 100.0 34 ................................ CAAGAGGCTGATTTAATCGCAGGCACACCAGACG 64377 32 100.0 34 ................................ ACGGAGGATACCCTTGCCAGCCTTTTAGTGTTGC 64311 32 100.0 33 ................................ ATTGAATTAAAAACATTTAATCAAATGAGCCAA 64246 32 100.0 34 ................................ TCGTTTATCGTAAATCCTGTCCCACCATGTGCCT 64180 32 100.0 33 ................................ CTCGTCCGTCCTGTCCTCAATACCATAAAGTTG 64115 32 100.0 33 ................................ AACAAGAAATATGATGAGCTCATTATACAGGTG 64050 32 100.0 34 ................................ AACAATAGTATGGAATACATCCTCCAGAATAAGA 63984 32 100.0 34 ................................ AACGATACACCTGGTATCTTGTTGAGTTTTTCGA 63918 32 96.9 0 ..............A................. | ========== ====== ====== ====== ================================ =================================== ================== 23 32 99.9 33 GTCGCTCCTTACGCGGGAGCGTGGATTGAAAC # Left flank : AACAAGAGCCTTCAGATTCCAATCAATGAGCCACATCTTTAGGGGCCTTGAAGGAACTTAAAAACCATATGTGACTGGGAACGAGACCTGAAGACGGGTTTAAAGTTATCCGGTCGGTTAGAAGGATGGGGCTGGCAAAAATGCTGAGGTTTCTCATCAATGATTTACAGCTAATGAGAAACGAAATAATCAATTTTAAAAAACATTACCGCTTGTATCGGAAGAAGTTGATAATTTAGCCTATAATAATTGGTTGTATGGAACGAAGATGAAATCAAAACTATTAAAAAAGTTTTAGAATCGGAAATGAGATTTTAATGATGTAAAGGCTAGTGCGAACCCCAAGCTCACATGAAATTCCCGGGAGATTCGCACCCCGCGTCCTGACTGGCTTTTTCATGAAATAACATCGAATTTTTGAATGTTTAGAGTTACAATATAAGAGGTTCGCACTTTTGGGCCTCCAAGCTCTTGCAGGATAAGGGCTCGTGAGTGCCGCT # Right flank : GCTATTTCCTCCGCTATGATTTGCTCGTACTTCTTGTCACTCCTTTCCCCACGTTGTCACGCTGCGCTCATGCAAGCTTCCCATGTAGAAGCATGCATGAGATCAGAACCCCACATGTGAAAGACCCAATCGTTGTTGAAAGGAAGTTACGCCAGGAAGCGCATCTTATGAATAATTGAAAGCGCTTTCTAAATGTGCTAATCATTCACGTTTCGACACAATTACCCAATTGATGATATTTAATAAAAAAATGAGATATTTTTGAAGGAATGTAACCTCGGTTGTAGAATGGTTTATTTAAGCCCTTTATGGGTCTAAAGTCATACGCGAGTTTCATTATTCCTTTTGATTCGACAGGAGGAGATAAATGGCATTTTATGCACATAGCAGGGATGACGGGGATTTTCAGTTGCTGCATGTTCATTTGTTAAATGTAGCACAAAGATGCGAAGCAAACGCACAAGCCTTTGGAGCTAAGGAACTGGGTTATTTGGCAGGCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTTACGCGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCACGCGGGAGCGTGGATCGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 66641-66148 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYPA01000023.1 Paenibacillus oryzae strain 1DrF-4 C1271, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 66640 32 100.0 33 ................................ CGCTTGCTGGCGTTTATCATTTCGTTAAGCGTT 66575 32 100.0 34 ................................ GATGGATTAAAAATGGGAATCACCTCTGCTGGAG 66509 32 100.0 35 ................................ GCCAAAGGCCACAGGATCGTCCCAATACAAGTCAG 66442 32 100.0 34 ................................ TACCCGTAGTAGCGTTAGTGACTGTCCCGTACTC 66376 32 100.0 33 ................................ GGTCATGCCCGATTTTATTAAGTGTTCTGTCTT 66311 32 96.9 34 ..........G..................... CCTCGCCGCCCGCCATTTCCGTATTGGTAAGGAT 66245 32 90.6 34 ..........G.............GC...... ACTGCCCTTACTGTTGCTGCTTTAATCCATTCCT 66179 32 87.5 0 ..........G....A.......A......T. | ========== ====== ====== ====== ================================ =================================== ================== 8 32 96.9 34 GTCGCTCCTCATGCAGGAGCGTGGATTGAAAC # Left flank : GGGTTTTCAGGATTTTTGAGTACATTTGCATGACACCTATGAAACTTCCATCAATTGGGACGAACTGCATAAGTCATGTTAAAATAGAATAGATTCGCACTTTTGCGCTTGCGAGCCCTTGCTCAGCAAGGGCTCGCGAGTGCCGC # Right flank : TGATGACTATCGGCATACCCAGTGCATGGAAGGGGTGTTTTTCTATGTTCGTCAAGATGGCTACCCAATAGACTTTAGACATATGTTAAACATGGTATTGAGTTGATTCTGATTCTGAAAAATTGAGTTAATAAATAGGAGCTGTCCAAGTTGCGTTGGCTCTGGACTTCAATGATAGGGACTGTGCTCATAAAATAGGACAGTCAAGCCATTAGGCTACAGTAGTGTGCAACTTGAGGTTACGGGGGCTTTACGAGAGGGGAATCGACTTTCAGTCAGGAGATTGGAGAAACAAGAGCCTTCAGATTCCAATCAATGAGCCACATCTTTAGGGGCCTTGAAGGAACTTAAAAACCATATGTGACTGGGAACGAGACCTGAAGACGGGTTTAAAGTTATCCGGTCGGTTAGAAGGATGGGGCTGGCAAAAATGCTGAGGTTTCTCATCAATGATTTACAGCTAATGAGAAACGAAATAATCAATTTTAAAAAACATTACC # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTCATGCAGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA //