Array 1 11036-9568 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINEM010000027.1 Escherichia marmotae strain C8-5 c_000000000027, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 11035 28 100.0 32 ............................ AATGTGCCGCGAACTCAATAATTTAATACAAA 10975 28 96.4 32 ........T................... CGTATCAGGACGCGCTCGAGGCGCAGAGCCTC 10915 28 100.0 32 ............................ GTGAATGTGGGGGTAAACGGGTAATTAGCAAT 10855 28 100.0 32 ............................ GTAATAATCAGGTTGATGGGGTATAAAATAAT 10795 28 100.0 32 ............................ AAACCGATTAATCCGCCGATGCCCGCCAGGGT 10735 28 100.0 32 ............................ ACCAAATGCCAGCATCGCCATGCGAACGGCCA 10675 28 100.0 32 ............................ ATATTGATTGGCGTCATTGGTGGTGATAGTTC 10615 28 100.0 32 ............................ AGAGTCCGGTCCCTGGTCCGTCGGCTGATTAC 10555 28 100.0 32 ............................ CCACAATCCCCAACGCCGCGCCAACGCCGTTA 10495 28 100.0 32 ............................ ACACGGAGAGCCAGTGGATTGAAACCACGTAT 10435 28 100.0 32 ............................ TCGATGCCCAATACTTCGGAGTGGCCCAACGA 10375 28 100.0 32 ............................ GTTGCGCCGTTAATTTCGAACGGGCGCGATAA 10315 28 100.0 32 ............................ GCTGCCGACGTCGTTATTTACGGTCATGTCGT 10255 28 100.0 32 ............................ GCAAGGGGTGGGTGGACAAACGCTGGTTGTGT 10195 28 100.0 32 ............................ AGCTCCGGCGGTGGTGTAGTGAGTAACACGGC 10135 28 100.0 32 ............................ AGTTTCGAAAACGTGCAGCAAATGCAGTGGAC 10075 28 100.0 32 ............................ TGGCAGGGAGTGCCGCCAACCAGCACGTCTGG 10015 28 100.0 32 ............................ ATAGTGCGCAACGTGCGGGAGTCCATACAGAT 9955 28 100.0 32 ............................ CATCAACTCAATTTCGACGCCCGGTAATTTAT 9895 28 100.0 32 ............................ CCCAGATAGTTGATAACTTCGTCGCTGTCAGC 9835 28 100.0 33 ............................ CCAGCCAGCATGATTCCGCGCGTTAATGTTGGA 9774 28 100.0 32 ............................ TCATACCCCCATATTTTCGACGCCCGGACATC 9714 28 96.4 31 ...........C................ AGCAGCAGGATTATTTAAACCGCGTTGCGTC 9655 28 96.4 32 ...........C................ TCGCTCCGCCAGTGCAACTGGTAGTAGAGTGC 9595 28 89.3 0 ....................T..TT... | ========== ====== ====== ====== ============================ ================================= ================== 25 28 99.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGTTTTTTATTTAAGGCGCATTAATGCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTAAAATATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCTGACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTATAGAGATTGATTCGTTTGGTTACGCAATGAACATGCTGTTTGCGTGACGGAGATTATGACCGTATGTGTTCTGTTTAATTGTTTATCAAAAACTATGCAGAAAATATGAGATTGAAGAAGTAACAAATCGACCCTTTTTTTAGGTTGAAATGTAACTCATTGATTTTGTTTATTGCTATTTTGAAGTCTGGAAAAAGGGGTTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ATCCATACCCAATATTTATTTTCTTCCTTAATCCCGGGCGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCGTCAGGCGGCAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTGTTAGGTAACGTTTCAAGAACAGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTTGGCACATAACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAACGGTGAGATAAAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 25306-24797 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINEM010000027.1 Escherichia marmotae strain C8-5 c_000000000027, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 25305 28 100.0 32 ............................ CACAGGCCGCGTCTGTGTTCCTGTGCATTCCT 25245 28 100.0 32 ............................ ACGCGCACGATAACGCTGCTGGAGTTCGTCGG 25185 28 100.0 32 ............................ TGAATGAAGTTGTCTCCCTGACTACTGATATT 25125 28 100.0 32 ............................ ACCAACAAAAACAGGTGTTCCGGCGCAACACA 25065 28 100.0 32 ............................ TCTGGAGTTGTTACCGCCTCACCACAGATATT 25005 28 100.0 32 ............................ TTTGAGTACCTCAGCAAGTACCGGATACTCTT 24945 28 100.0 32 ............................ ATCCCCAGGGTCGCCGATTACGGGCGCAAACA 24885 28 100.0 32 ............................ AGCCAGGTTTGAGGATCTCGGTGTGTCATTGA 24825 28 92.9 0 ....................T...C... | C [24802] ========== ====== ====== ====== ============================ ================================ ================== 9 28 99.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GAGTTGCAGGTTCAACTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCACGTAACTGGCTGGCTGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCTCGCGTCATCCAGGACAACCTGAAGAAACCGCTCGCTAACGAACTGCTGTTTGGCTCGCTGGTGGATGGCGGTCAGGTCACTGTTGCGCTGGATAAAGAGAAAAATGAGCTGACCTACGGGTTCCAGAGTGCACAAAAGCACAAAGCGGAAGCAGCGCATTAATCTGGGGTCGTGAAGCCTTTTAAGTAGGTTGATAAAGTCCGTAATCTCGTAAGAGGTTACGGATTTTTTTGTTTGTGAGGTGGGGCGGTAAAAACCCTATTTTTGAGGGCGAAGGTAAGTTATTGATAATTAATGCTGCTGGAAGGCAAGGATAAAAAAGGGGCTGGACAAGGAATTTTGCTGGTTTCGCTTTATTAACAATGGGCTAAGCGTGTAGTATTTGA # Right flank : TACGATGATGGCAGAAATTTAGCTGCGTTATGGCGCTCTCAACTCCGAACCATTAGCTGTGACACACAATAACAATTGTGATAATTGCGACGAGAATCAATTTCTCACACAGAAATCAATGCTGTACTAATCCTAACTCCTTCAAATAAAAATAATCACAGGATGTGTTTATGTCTTCAAATTACCTTACTCCTTCTGATCTCAAAACCATTCTCCACTCCAGGCGTGCCAATATTTATTATCTGGAAAAATGCCGGGTGCAGGTGAATGGTGGGCGAGTGGAGTATGTCACCAGTGAAGGCAAGGAGTCGTATTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGTTGGGGATGGGAACGTCCGTTACCCAGGCGGCGATGCGTGAATTTGCCCATGCTGGAGTGATGGTTGGTTTTTGTGGTACGGATGGCACGCCACTGTATTCGGCAAATGAAGTTGATGTTGATGTCTCCTGGCTCAGTCCGCAAAGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //