Array 1 36070-37014 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNVD01000019.1 Jhaorihella thermophila strain DSM 23413, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 36070 29 100.0 32 ............................. CCTTCTTGGCATACTTGTCGAGATAGGTAGGC 36131 29 100.0 32 ............................. GGCCGATGCAATCGAGGCGAATGGGGGCGGCA 36192 29 100.0 32 ............................. TGGCCGCCGCGATCGCGGAGGGTCGTGATCGT 36253 29 100.0 32 ............................. TTCCTGGTCGCGTTCGGTGCCGACAGCTTGGA 36314 29 100.0 32 ............................. GCCGTCGCTGAATATCTACGTCGCGAAGCTGA 36375 29 100.0 32 ............................. GGCGGCTGATTGGGCGTCGATGATTGCGCGGT 36436 29 100.0 33 ............................. CAGCCGGTCATGTTCGGGGATCTCGATCATGCC 36498 29 100.0 31 ............................. GGAATGATGATGCCGATCCGTCCTGAGAACC 36558 29 100.0 32 ............................. CGTCGAACAGGGGTCGCGGGGCGTGGGGATCC 36619 29 100.0 32 ............................. GCGCTCAAAACGCTGATGACGCAGATGGATGC 36680 29 100.0 32 ............................. CCAGCGGCATAGAGTTTGTAGGTGTAGTCCGT 36741 29 100.0 32 ............................. GAGCTGGACACAGTGATGGGGGCCTACCCCAA 36802 29 96.6 32 ............................A TGTTGACGATCCAATCGGCCAGCACCAGCGCC 36863 29 100.0 32 ............................. AACCTCGACGGTTCCGCCGCCACCCATGCCCT 36924 29 100.0 33 ............................. GCTTTGGACGCCCGCATCGGGGCAGCGCTCGCC 36986 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 16 29 99.8 32 GTGTTCCCCGCACCCGCGGGGATGACCCG # Left flank : GCCTGCTGTCCAAGATCATTCCCGGCATCGAAGAGGTCCTGTCGGCGGGCGACCTGCCCAAGCCTGTGCCCGCGCCCGAGGGCGTCGGCCCGGCCTTCAGCGACGGCGAGGGAGGCGGCGATGATGGTCATCGCGGTTGAGAACGCCCCGCCGCGCCTGCGGGGGCGGCTGGCGGTGTGGCTGCTGGAGATCCGCGCCGGGGTCTATGTGGGCCGCTACTCGGCCCGGGTGCGCGATCGCATCTGGGCGCAGGTCGAGGCCGGCATCGCCGAGGGCGACGCGGTGATGTGCTGGGCGGCGCCGACGGATCAGGGCTTTGCCTTCCGCACGGTGGGCCGCAACCGCCGGATGCCGGTGGACTTCGACGGCCTGACCCTGGTGCAGTTCGCCCCGCGCGACGGCCCCGGCTGAGGCCCCGGCGGCTGAAAAACCCGGCCAAGATCATCGGTGGAAATTCGACGGGTGACAAATCCGTTGTTTTTCAATATGTTCCAGCCAGA # Right flank : GCCCTTCGGGCAGCAAGGCATTAGGCACCCATAGTGTTCCCCGCATATGAAAGAAATAAGTTCTTCAAGAAGCCCGAGGGCGTGATTTTCGCCTGATCCTAATTGCGACTTTTCTCTTATATCTGCTCCGCGAAGCTCATGTCATCTGACGCGAGCATCATGATCGCCATGGTCTCGGCCATCTCCCGAGACCCGGCCGGCAAATCTGCAATCCCAGCAATCTAGGTTGGCCCCCCAGCGATGCTGTCTGGACTTGTCACGGCGTTGTTCCGCTCCTTCGAATTGCCAGCTTGCCTCAAAGGGGCGTCAACACGCGTTCATGGATTTCCTGATCGAAAGGATCGGCAGATCGCTGGGCGCGGGCTGGGGCAATCAGAACGCATAGGCCAGCCCCATCTTTGCCCCCGGGCGACGTTTGATCCGCGGAACAGGCCCTTCCGCCCGTGAGTAGAGTACGGATTGGTTTGCTGGGGAAGATGGTAAGCGCGTGATATCACCAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACCCGCGGGGATGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCACCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 104240-104917 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNVD01000009.1 Jhaorihella thermophila strain DSM 23413, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 104240 37 100.0 34 ..................................... GCCCTAAGCAACTGAATGATTCTGCGCGTGGTCG 104311 37 100.0 33 ..................................... GTGCCGAGGTGCGTGACGTCGAAGTCGGCCTCG 104381 37 100.0 34 ..................................... AGCTTGTGGAGTTTGTGCGGCCGGTGCAGTCGTG 104452 37 100.0 32 ..................................... CGCTCCATGGCCTCTATGGCCATTTCGTATCC 104521 37 100.0 35 ..................................... TGATTTGAATTTTTTGAGCGCGCAATCTCAATGCG 104593 37 100.0 34 ..................................... GGCTGCGTCAAGAGCCTGCGAAGCGGGAATTTCC 104664 37 100.0 36 ..................................... CGGTAGTCCTCGTGGATCAACGTCTCACCGTATTTC 104737 37 100.0 34 ..................................... GCCGCGAACGCGGCAGCTGCACTTTCCAAGGCCC 104808 37 100.0 36 ..................................... TCCACGTCGGCCTGCGAAAACTCGTCTAGGAAGAAC 104881 37 97.3 0 ....................................G | ========== ====== ====== ====== ===================================== ==================================== ================== 10 37 99.7 34 GTCGAAAGACATGCCCCGCTTCCAAGGGGATTGAGAC # Left flank : GCACCCGGCGCAATCCCGCTGCCGCATCACGCAGACAAGCCGCCGCAGCGCATGTCCGAACCCGCCCCGCAACATCGATCCGTCGAAGGCCGGGGCCCGGAACGGCGCCTGCGGTTCAAGCGAGAATCTGATCCATCCGGTCTGCACGTCAAGCATGTGCCACACCATACGAAAACACGATATGGGCGCAAGAGCGTATCGTGTCGAGACAAGCTTGTCGTCGCCGGCCCGATGAGTATGGGGGTGAGGATGGGCTTGTCAGACCGGTCCTGGCGGACTAGCCTCTGGGCAGCCCGGGCGGCCGGGCGATCGCGTCCGGGCGGAAGGCTCCGGAACAAGGGCGGAAAATCTTTCGCAGTTCGGCGTGATCGGCTCTTTGAAAACAAAGGATTTTTTCCGGCGATGGAGGTGCTTTTCCGTCACAAGTCCGGCGAGTCGCGGACGTTTTCGCAATTCGTCCGAAAACCTCTTTGGCAACAGTCACTTGCCAGGGGGGGTCA # Right flank : GGCGCTGATGTTCCGCACGCCAAGGTAGGTGCAATGCACCGCGAAGCCCTCGCCGCCGTCAATCCGCGCTACCATCGCGGGCAGGCGCGTGCCGGTGGGGTGCGGTGCCGCTTCGTAAAAGCGGATCGTCGCGCCATCGGGCAGATCAAGGTAGCGGTTGCGCAGGTAGGTTTGCACCAGCGTGCCGCGCGCGGGCTTGCGCTCGGGCCGGTCATGAGCATAGCTTCAGGCCTGTGTCCTGGCCCTCCTTGCTTGGACTTGGGTGTCCGGTCAAAATAAGGGCCGGTTCACGGGCCTTGGAAATTGGCGATACGGGGAACGGGATGAAGATCAAGACAAAGGAAGTTCGCATCGCCAAAGGCGTATCGCAAACTGAACTGGCAAAACGGACCGGCCTATCCCGGCCATATCTCTCACAACTTGAAAGCGGTGTACGCAACCTTTCCGCGCGACACCAGGCCAAGATCGCGGAGCCCTCGGCGTCGATGCTCGGGAATTGA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAGACATGCCCCGCTTCCAAGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.00,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA //