Array 1 15938-17674 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLYO01000145.1 Escherichia coli strain AZ76 4626, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 15938 29 100.0 32 ............................. AACTGCTGGAATTGTTTGATCAATTACCGGAC 15999 29 100.0 32 ............................. ATCATCACAGCCAGCCTCAAAGAGGTTGACGT 16060 29 100.0 32 ............................. CCGTCGGCAGCGGCGTTAAATGGGGCGCGCTT 16121 29 100.0 32 ............................. TGATAAATTGTCCGCCCTGGCGGAATACCTCA 16182 29 100.0 32 ............................. ACGGCTTCATGTTCTTGGTGATGGGGTTCACC 16243 29 100.0 32 ............................. AAAAAATGCGACGACCGCAGCCATTCCGATCT 16304 29 100.0 32 ............................. TCATACGCCTGGTATAGCGATCATCCCGATGA 16365 29 100.0 32 ............................. GCGTTGGAGTTCGCGGCGGCATTATTGAGCCT 16426 29 100.0 32 ............................. AGTCTTTAATCAAAATGGATTTTTATAATGAA 16487 29 100.0 32 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 16548 29 100.0 32 ............................. CGGTGGCAGTGATGAGGCGTTCCCAATTAATG 16609 29 100.0 32 ............................. CGCACTCAAAATAGTAAATTAATTTATGAATT 16670 29 100.0 32 ............................. CATCCGGCGCTGAACATCGCCACCTGCCTAAC 16731 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 16792 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 16853 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 16914 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 16975 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 17036 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 17097 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 17158 29 100.0 32 ............................. GGACAATGTGAAAAGCTTAATATTCATTACAT 17219 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 17280 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 17341 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 17402 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 17463 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 17524 29 100.0 32 ............................. GGATATAGAGCGGGTACTCGAGCGGAGCGGGG 17585 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 17646 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 29 29 99.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 222-77 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLYO01000133.1 Escherichia coli strain AZ76 4602, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 221 28 100.0 33 ............................ AACCTACCGTCTTGGCTAGCGGTTGCAGCGAAC 160 28 100.0 28 ............................ TTCACAGGTAACATACTCCACCCACCAT 104 28 78.6 0 ................A...A.A.A.TG | ========== ====== ====== ====== ============================ ================================= ================== 3 28 92.9 31 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TAAATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCTCGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCACTGGATAAAGCGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCAGGTAGGTTGGTCAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTATTTATGGGGTGGAACGGTGAAAACCCTATTTTTGGAGGTGAAGGTAAGTTGTTGATAATTAGTGCTGCTGGAAGGTAAGGATAAAAAAGGGTGCTGCAGGAGAATGGGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : GCGAAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATA # Questionable array : NO Score: 5.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //