Array 1 4125861-4124152 **** Predicted by CRISPRDetect 2.4 *** >NC_004547.2 Pectobacterium atrosepticum SCRI1043, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4125860 28 100.0 32 ............................ GCAGAGACTATCGATACGGTCTGGACGGATGC 4125800 28 100.0 32 ............................ TTAGGGTTGTAGAATCCCCTGAGCCATTGATT 4125740 28 100.0 32 ............................ TGTGTCGGATCGGCGTCGGCGTTGCCGTCAGG 4125680 28 100.0 32 ............................ CTCGGCATACGCCAGTTGGGGAATAACAGAGT 4125620 28 100.0 32 ............................ GCGAATCGTACAGTGGCCAGCGAGCGACGGTT 4125560 28 100.0 32 ............................ GTTTGCAGGGTCAGACCACGACACCATCGCCT 4125500 28 100.0 32 ............................ ACCCGCAATTTGACAGACGAGCAACGCAAGCT 4125440 28 100.0 32 ............................ AGCATCACGTCGTGGGTCAAATACTGCGACAG 4125380 28 100.0 32 ............................ CGATGGCGGAAGCGGTCAGGCTCAAGGACAAA 4125320 28 100.0 32 ............................ TGCACCTCACCGGTTGCCAGCTTACGCAGCGT 4125260 28 100.0 32 ............................ ATCGTTACACGGCACATAGATTGCGTCCGTAA 4125200 28 100.0 32 ............................ GTGTGGGCCAGCCGTACAGGTGATTACAAAGA 4125140 28 100.0 32 ............................ GGAAAGTTGATCTACACCGACGAGCCTAACGC 4125080 28 100.0 32 ............................ AGCGTAGACGCGAACTCATGCGCGAATTGCTC 4125020 28 100.0 32 ............................ TGTTGAGCTAACTGGTAGTTGCTGCGGTCTGG 4124960 28 96.4 32 ...........C................ GATCTACCAGCCTCAGACACATTAGCCCCCGC 4124900 28 92.9 32 ..........AC................ TGGCACGGATACATCCACTTCACTGACGCGCC 4124840 28 96.4 32 .........A.................. AGTGTAGTGATATAGATTGGCCGGCTCATTCA 4124780 28 100.0 32 ............................ CGGTGATGAGTGCCTGATTATCTTTGCCGATC 4124720 28 100.0 32 ............................ TGAACTAACACGCCATAAGCAATATCAAGCGT 4124660 28 100.0 32 ............................ TGTCGCCATAACCACCTGTAATACAGGCTCGG 4124600 28 100.0 32 ............................ ACAGATAATTGATAGAGAGACGTCAATTAATG 4124540 28 100.0 32 ............................ GTCACATCGTCGTCCCTTCCGAGGACTATGGA 4124480 28 96.4 32 ...........C................ GTATCCAGTGACCGACGAATCAGCGCTCGACA 4124420 28 96.4 32 ...........C................ TGCGCATTGTGGACAAAATCGCGCGGCGTGTT 4124360 28 96.4 32 ...........C................ TCGATAAGGTCTGGGAGCGTATCCGAGTATCG 4124300 28 100.0 32 ............................ GTTTACGATTCTGCTCACGTCACTAATTTCAA 4124240 28 96.4 33 .................T.......... CACGCGAGATCGCTGTTCAGGCCGAGGCAACCC 4124179 28 85.7 0 .....................C..TTC. | ========== ====== ====== ====== ============================ ================================= ================== 29 28 98.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GAGTTACGGAGGTGCCGGTTCCCAGCATCACCACGCTGGTATTGGCGATGGGAATATTCCAGTACAGAGACTGGTTTCCTTCCTCCGTGACATATTCGACACGACCACCGTTGACGAGAATACGGCAATGTTGGAGGTAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAATCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTTCCGTAATAGATAATAGCCATAACGCCAGCTAAATAAATCGCAGGCTAACTATTTGATAAGGAAAAATATAACTTTCAGAAAACTGATGAAAATCAGCCTATCACAGTTGCATGTGAAAGATGATGACCGCAAAAAATTTTACCCAAACGTAGACCCTTTTTATTTGGCCTATTTCACAGGATTAAAAATCAATGAGTTACAGATGGGGTTAAAAAAAGGGTTTTTACGAAGAAAATGGCAATTGCTGCTAATAAAACAAATCGTTAGAGTGATCGGGCTACA # Right flank : CAGCACTCAGGCACTGCTGTCTGGTTATTATCGAGGTAGCACTGCGCCAGCGCTCAATGCGCTGTAGCTCTTAAATAACGTATTGTTGATGGCTTATTTTCGTAATATTTTCAAGTAACGGGTATCTTTGGGTGGGAATGGAAAATTGCAGATTGAATGTTATTAACATTTAAAAACCATCATTTTTCCGTTAAAGTGCACTTACAGGGAAATAGTTTGTTGACTTAAGTAAAATTCGAGGGAATGAGGCACTTGTGAAATACGATCCGGTTTTAAAAACGCTTGTTGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAACAGCATGCAGATATTAACTATCAGAAATTACATGCTCAACTCAATGAAATAAATAACGATAACATTCATGCCATATTGACTGCGCAGGAAGCGACGTATTTCTTACAAACGTTATGCACACCTAATCCTAATCAATCGTGGAAAACAGCCATGTTTGGCTGTACCGATCCT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 4135961-4136589 **** Predicted by CRISPRDetect 2.4 *** >NC_004547.2 Pectobacterium atrosepticum SCRI1043, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4135961 28 100.0 32 ............................ AGCCTGAACCCGTCCGATTATCAAGATGGGAA 4136021 28 100.0 32 ............................ AGCTCCGACCGACATGCGCTTAAAGGCGGCGA 4136081 28 100.0 33 ............................ ATGCAGATATTGTAACTAAGCATCATATTGCAT 4136142 28 100.0 32 ............................ TGTAGGCCATATAACAAATACTCAAAGATAAC 4136202 28 92.9 32 .............T......T....... TTGCGATTGGCACCGTTAACCGCTCAGTGACC 4136262 28 92.9 32 A............T.............. TCCAGTACTCAGGATCGTGTTGGTACGATAAA 4136322 28 96.4 32 .............T.............. AGTTCTGACACTCGTTAAACGTCATAACGCGC 4136382 28 100.0 32 ............................ GAAATATCCACCTGGACACTGTCCATAAAGAA 4136442 28 96.4 32 .............T.............. ACGACGGATAGTCTCTGTCTGACGAACGCAAC 4136502 28 96.4 32 .............T.............. GCCCTGAAAAAAATGGGTTGTGATGACCATGC 4136562 28 78.6 0 ............G.......T.C..TGT | ========== ====== ====== ====== ============================ ================================= ================== 11 28 95.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CCCTCTTCGACTACATCCTGACGTTCTGTCATAAAGTCTGCGTCAGCACGCTCTTCTTGCAGAAAAGAATGCCAATTGGGTTTGACTGGGCGCAACATGATGGTATCCCCTTCACGCACGATCTCCAGTTCATTGACGCCTTCAAAGTCCATATCACGCGGCAAGCGAATAGCACGGTTATTACCATTTTTAAATACTGAGACAATACGCATAATGCACCTCCTCTTAATACAGAATTCAGCAAGCCGCTAGCCTGACTAAAACATAGGTTAAGTATAGATTTGAATCGTTCTCTTGTATATCCGCGGCATATGTACGCACCTAACATAGGTCTACCGAGAATAGATAAAATCGTTACCACAGGGTTGGCACCCTTTTTTCATGGACGCTTGTAACTCATTGATTTTTAATATCGATTAAGCGCTATGATAAAAAAGGGTTTTTCGGGAGAAATGGTTTATTTTCTTTTAAAATTAGGTAACTACCGTAAAATAGGAACG # Right flank : TTTATCGAGATAAGTCTCTAGCACGACTCACCTCAAGGGTGTTATTCCCCATTCAGCGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAAATGCCCTGCCAAGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGAATCGTCAGGCTATTTCCTAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATAAGTATGGCGGTAGTACGGCTCATCCTCCGGCACTAAACGATTAAAGAAGCTCTCGAAATCCTGCCGTACCGTGGGATCGGCATTCTCATTAATCGTCAGCGCCGCCGAAGTATGTTTGATGAACACATGCATCAACCCGACCTTTATCTGGCGCAGTGCGACAACCTGCGCCAGTATTTCGTCAGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCGTCCACATGATTTGGCCTCTCGCTATCAGGCTTCGCGAGCCAGAATA # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //